View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11614_low_26 (Length: 319)

Name: NF11614_low_26
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11614_low_26
NF11614_low_26
[»] chr1 (16 HSPs)
chr1 (1-306)||(24233404-24233703)
chr1 (52-299)||(45692879-45693129)
chr1 (237-292)||(25478862-25478917)
chr1 (231-302)||(24242846-24242917)
chr1 (231-289)||(23896139-23896197)
chr1 (233-306)||(24246482-24246555)
chr1 (240-289)||(24629213-24629262)
chr1 (239-302)||(25610955-25611018)
chr1 (231-293)||(24626770-24626832)
chr1 (239-292)||(24634804-24634857)
chr1 (239-292)||(24513055-24513108)
chr1 (101-139)||(25478732-25478770)
chr1 (92-142)||(25611109-25611159)
chr1 (239-289)||(51782798-51782848)
chr1 (234-287)||(24805076-24805129)
chr1 (234-302)||(24221985-24222053)
[»] scaffold0015 (2 HSPs)
scaffold0015 (6-302)||(40370-40669)
scaffold0015 (207-302)||(32318-32413)
[»] chr7 (1 HSPs)
chr7 (101-302)||(1421158-1421359)
[»] chr4 (1 HSPs)
chr4 (231-292)||(11032901-11032962)
[»] chr5 (5 HSPs)
chr5 (226-292)||(3181703-3181769)
chr5 (239-290)||(11081812-11081863)
chr5 (239-290)||(23766863-23766914)
chr5 (239-290)||(23816711-23816762)
chr5 (240-289)||(20292995-20293044)
[»] chr3 (19 HSPs)
chr3 (239-290)||(2696733-2696784)
chr3 (239-290)||(4142135-4142186)
chr3 (239-290)||(4157945-4157996)
chr3 (238-290)||(3754598-3754650)
chr3 (240-303)||(7324419-7324482)
chr3 (240-290)||(1437996-1438045)
chr3 (240-290)||(2456249-2456299)
chr3 (240-289)||(13498224-13498273)
chr3 (242-290)||(23197014-23197062)
chr3 (239-290)||(1891065-1891116)
chr3 (239-290)||(7432055-7432106)
chr3 (238-289)||(9608346-9608397)
chr3 (240-290)||(771500-771550)
chr3 (240-290)||(2442039-2442089)
chr3 (240-290)||(7334240-7334290)
chr3 (240-290)||(7942485-7942535)
chr3 (241-290)||(2631358-2631407)
chr3 (242-282)||(2459277-2459317)
chr3 (242-290)||(23230983-23231031)
[»] chr2 (4 HSPs)
chr2 (240-290)||(36577366-36577416)
chr2 (243-290)||(7168691-7168738)
chr2 (240-290)||(7160755-7160805)
chr2 (93-137)||(33038010-33038054)
[»] chr6 (4 HSPs)
chr6 (241-290)||(24417487-24417536)
chr6 (244-289)||(9819831-9819876)
chr6 (99-139)||(4183153-4183193)
chr6 (99-139)||(4743997-4744037)
[»] scaffold0044 (1 HSPs)
scaffold0044 (238-290)||(89141-89193)


Alignment Details
Target: chr1 (Bit Score: 238; Significance: 1e-132; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 238; E-Value: 1e-132
Query Start/End: Original strand, 1 - 306
Target Start/End: Complemental strand, 24233703 - 24233404
Alignment:
Q  1 ttaaggacttcccttttatgtttcgttttggtcgacatggagtagttgtgtgtggcacggtgaattggtcgacttattataactcaagtgacttgtgtgt 100  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||| ||||    
T  24233703 ttaaggacttcccttctatgtttcgttttggtcgacatggagtagttgtgtgtggcacagtgaattggttgacttattataactcaagtgacttgggtgt 24233604  T
Q  101 cattgtttctcttcatttggggaaggaatcttatcaagaaataccagttcctgattctggagatannnnnnngtcgactttggatatgatgagggagtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||        ||||||||||||||||||||||||||||    
T  24233603 cattgtttctcttcatttggggaaggaatcttatcaagaaataccagttcctgattctggagatttttttttgtcgactttggatatgatgagggagtgc 24233504  T
Q  201 ttgtgcatattttctcgaaaaagaaccgattcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttc 300  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||||      |||||||||||||||||||||||||||||||||||||||||||    
T  24233503 ttgtgcatattttctcgaaaaagaaccgattcttttactgatgtttggctt------gaatacggaaataaagaatcttggattaaattgattagtcttc 24233410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 52 - 299
Target Start/End: Complemental strand, 45693129 - 45692879
Alignment:
Q  52 gtggcacggtgaattggtcgacttattataactcaagtgacttgtgtgtcattgtttctcttcatttggggaaggaatcttatcaagaaataccagttcc 151  Q
    ||||||| || ||||||| ||| |||||  | |||| |||||||| |  |||||||||||||||||||||||||||||||||||||||||||||  | ||    
T  45693129 gtggcacagttaattggttgacatattacgattcaaatgacttgtctaccattgtttctcttcatttggggaaggaatcttatcaagaaataccgttgcc 45693030  T
Q  152 tgattctggagatannnnnnngtcgactttggatatgatgagggagtgcttgtgcatattttctcgaaaaagaaccgattcttttattgatgtttggctt 251  Q
    ||||| |||| ||        || ||| |||| | | |||||||| |||||||||||||||||| |||||||  |  |||||| | ||||||||||||||    
T  45693029 tgattatggaaattttgatatgttgaccttgggtgtaatgagggaatgcttgtgcatattttctagaaaaagttctcattcttctcttgatgtttggctt 45692930  T
Q  252 atgaaggaatacggaaata---aagaatcttggattaaattgattagtctt 299  Q
    ||||||||||||||| |||   | || ||||| |||||||||||| |||||    
T  45692929 atgaaggaatacggatataaggaggagtcttgtattaaattgatttgtctt 45692879  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 52; E-Value: 8e-21
Query Start/End: Original strand, 237 - 292
Target Start/End: Original strand, 25478862 - 25478917
Alignment:
Q  237 attgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgat 292  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||    
T  25478862 attgatgtttggcttatgaaggaatacggtaataaagaatcttggattaaattgat 25478917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 231 - 302
Target Start/End: Complemental strand, 24242917 - 24242846
Alignment:
Q  231 tcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttcct 302  Q
    ||||||| |||||||||||||||||||  ||||||||||||||| |||||||||||||| ||| ||||||||    
T  24242917 tcttttactgatgtttggcttatgaagatatacggaaataaagagtcttggattaaattaattcgtcttcct 24242846  T

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Target: chr1; HSP #5
Raw Score: 47; E-Value: 8e-18
Query Start/End: Original strand, 231 - 289
Target Start/End: Complemental strand, 23896197 - 23896139
Alignment:
Q  231 tcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaatt 289  Q
    |||||||||||||||||||||||||||||||| ||||||||||| |||||| |||||||    
T  23896197 tcttttattgatgtttggcttatgaaggaatatggaaataaagagtcttgggttaaatt 23896139  T

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Target: chr1; HSP #6
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 233 - 306
Target Start/End: Complemental strand, 24246555 - 24246482
Alignment:
Q  233 ttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttcctatct 306  Q
    ||||| |||||||||||||||||| ||||||||||||||||| |||||||| ||||||||  | ||||||||||    
T  24246555 ttttactgatgtttggcttatgaaagaatacggaaataaagagtcttggatgaaattgatccgccttcctatct 24246482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 240 - 289
Target Start/End: Complemental strand, 24629262 - 24629213
Alignment:
Q  240 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaatt 289  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||    
T  24629262 gatgtttggcttatgaaggaatacggaaataaagagtcttggattaaatt 24629213  T

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Target: chr1; HSP #8
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 239 - 302
Target Start/End: Complemental strand, 25611018 - 25610955
Alignment:
Q  239 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttcct 302  Q
    |||||||||||| |||| ||||||||||||||||||||||||| |||||||||||  |||||||    
T  25611018 tgatgtttggctaatgacggaatacggaaataaagaatcttgggttaaattgattcatcttcct 25610955  T

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Target: chr1; HSP #9
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 231 - 293
Target Start/End: Complemental strand, 24626832 - 24626770
Alignment:
Q  231 tcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgatt 293  Q
    |||||||| |||||||||||||||||||||||| ||| |||||| |||||| |||||||||||    
T  24626832 tcttttatcgatgtttggcttatgaaggaatacagaattaaagagtcttgggttaaattgatt 24626770  T

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Target: chr1; HSP #10
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 239 - 292
Target Start/End: Complemental strand, 24634857 - 24634804
Alignment:
Q  239 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgat 292  Q
    ||||||||||||||||||||||||||||| |||||| |||| |||| |||||||    
T  24634857 tgatgtttggcttatgaaggaatacggaattaaagagtcttagattgaattgat 24634804  T

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Target: chr1; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 239 - 292
Target Start/End: Original strand, 24513055 - 24513108
Alignment:
Q  239 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgat 292  Q
    |||||||||||||||||| ||||| |||| |||||| || ||||||||||||||    
T  24513055 tgatgtttggcttatgaaagaatatggaagtaaagagtcatggattaaattgat 24513108  T

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Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 101 - 139
Target Start/End: Original strand, 25478732 - 25478770
Alignment:
Q  101 cattgtttctcttcatttggggaaggaatcttatcaaga 139  Q
    |||||||||||||||||||||||| || |||||||||||    
T  25478732 cattgtttctcttcatttggggaaagagtcttatcaaga 25478770  T

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Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 92 - 142
Target Start/End: Complemental strand, 25611159 - 25611109
Alignment:
Q  92 cttgtgtgtcattgtttctcttcatttggggaaggaatcttatcaagaaat 142  Q
    ||||| || |||||||||||||||||| ||||| ||||||||| |||||||    
T  25611159 cttgtatgccattgtttctcttcatttagggaaagaatcttatgaagaaat 25611109  T

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Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 239 - 289
Target Start/End: Original strand, 51782798 - 51782848
Alignment:
Q  239 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaatt 289  Q
    |||||||||| ||||||||||||| |||||| || ||||||||| ||||||    
T  51782798 tgatgtttggattatgaaggaatatggaaatgaacaatcttggaataaatt 51782848  T

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Target: chr1; HSP #15
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 287
Target Start/End: Complemental strand, 24805129 - 24805076
Alignment:
Q  234 tttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaa 287  Q
    |||| ||||||||||||| | ||||||| ||||||| |||| ||||||||||||    
T  24805129 tttaatgatgtttggcttttcaaggaatgcggaaatgaagactcttggattaaa 24805076  T

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Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 302
Target Start/End: Complemental strand, 24222053 - 24221985
Alignment:
Q  234 tttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttcct 302  Q
    |||| ||||||||||||| ||| ||| |||| |||| ||||||||||| |||| |||||  ||||||||    
T  24222053 tttaatgatgtttggcttttgatggattacgaaaatcaagaatcttgggttaagttgatccgtcttcct 24221985  T

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Target: scaffold0015 (Bit Score: 113; Significance: 3e-57; HSPs: 2)
Name: scaffold0015
Description:

Target: scaffold0015; HSP #1
Raw Score: 113; E-Value: 3e-57
Query Start/End: Original strand, 6 - 302
Target Start/End: Complemental strand, 40669 - 40370
Alignment:
Q  6 gacttcccttttatgtttcgttttggtcgacatggagtagttgtgtgtggcacggtgaattggtcgacttattataactcaa---gtgacttgtgtgtca 102  Q
    |||||||||| || |||||||| || ||||||||||||| ||||| ||||||| || ||||||| ||| |||| ||| ||||   ||||||| |||||||    
T  40669 gacttcccttctaagtttcgttgtgatcgacatggagtatttgtgagtggcacagttaattggtagacatattgtaattcaactcgtgacttatgtgtca 40570  T
Q  103 ttgtttctcttcatttggggaaggaatcttatcaagaaataccagttcctgattctggagatannnnnnngtcgactttggatatgatgagggagtgctt 202  Q
    |||||||||| |||||| | |||||||||||  | |||||||    ||| ||||||||| |||        || |||||||||||  ||||||| |||||    
T  40569 ttgtttctctacatttgcgaaaggaatcttacgaggaaatactgcatccagattctggaaatattaatatctcaactttggatatcttgagggattgctt 40470  T
Q  203 gtgcatattttctcgaaaaagaaccgattcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttcct 302  Q
    |||||||||||||| |||||||| ||| ||||||| |||||||||||||||||||||||| | ||||||||| |||||||||||||||||| ||||||||    
T  40469 gtgcatattttctcaaaaaagaaacgactcttttactgatgtttggcttatgaaggaatatgaaaataaagactcttggattaaattgattcgtcttcct 40370  T

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Target: scaffold0015; HSP #2
Raw Score: 72; E-Value: 9e-33
Query Start/End: Original strand, 207 - 302
Target Start/End: Complemental strand, 32413 - 32318
Alignment:
Q  207 atattttctcgaaaaagaaccgattcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttcct 302  Q
    |||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| ||||||||    
T  32413 atattttctcaaaaaagaaacgactcttttattgatgtttggcttatgaaggaatatggaaataaagactcttggattaaattgattcgtcttcct 32318  T

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Target: chr7 (Bit Score: 73; Significance: 2e-33; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 73; E-Value: 2e-33
Query Start/End: Original strand, 101 - 302
Target Start/End: Complemental strand, 1421359 - 1421158
Alignment:
Q  101 cattgtttctcttcatttggggaaggaatcttatcaagaaataccagttcctgattctggagatannnnnnngtcgactttggatatgatgagggagtgc 200  Q
    ||||||||||||||||||||||||||||||||||||||| |||||    ||| ||| |||| ||        ||  || |||| | |||||||||| |||    
T  1421359 cattgtttctcttcatttggggaaggaatcttatcaagagataccgcaacctcattatggaaatctgaataagttaaccttgggtgtgatgagggattgc 1421260  T
Q  201 ttgtgcatattttctcgaaaaagaaccgattcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttc 300  Q
    |||||||| ||||||||| ||||   | | |||| || |||||||||||||||||||||||||||||||||||| ||||||||||||||||||  |||||    
T  1421259 ttgtgcattttttctcgagaaagtcaccactcttctactgatgtttggcttatgaaggaatacggaaataaagagtcttggattaaattgattcatcttc 1421160  T
Q  301 ct 302  Q
    ||    
T  1421159 ct 1421158  T

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Target: chr4 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 231 - 292
Target Start/End: Original strand, 11032901 - 11032962
Alignment:
Q  231 tcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgat 292  Q
    |||||||  ||||||||||| ||||||||||||||||||||||| |||||||||||||||||    
T  11032901 tcttttaccgatgtttggctcatgaaggaatacggaaataaagagtcttggattaaattgat 11032962  T

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Target: chr5 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 226 - 292
Target Start/End: Original strand, 3181703 - 3181769
Alignment:
Q  226 ccgattcttttattgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgat 292  Q
    |||| ||||||  |||||||||||||||||||||||| |||||| |||| |||||||||||||||||    
T  3181703 ccgactcttttgatgatgtttggcttatgaaggaatatggaaatgaagagtcttggattaaattgat 3181769  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 290
Target Start/End: Original strand, 11081812 - 11081863
Alignment:
Q  239 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    |||||||||| |||||||||| || ||||||||||| ||||||| |||||||    
T  11081812 tgatgtttgggttatgaaggagtatggaaataaagagtcttggactaaattg 11081863  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 23766914 - 23766863
Alignment:
Q  239 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    |||||||||| ||||||| ||||| ||||||||||| ||||||| |||||||    
T  23766914 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattg 23766863  T

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Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 23816762 - 23816711
Alignment:
Q  239 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    |||||||||| ||||||| ||||| ||||||||||| ||||||| |||||||    
T  23816762 tgatgtttggattatgaaagaatatggaaataaagagtcttggactaaattg 23816711  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 20292995 - 20293044
Alignment:
Q  240 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaatt 289  Q
    ||||||||| ||||||||||||| |||| |||||| ||||||| ||||||    
T  20292995 gatgtttggattatgaaggaatatggaattaaagagtcttggactaaatt 20293044  T

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Target: chr3 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 19)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 2696784 - 2696733
Alignment:
Q  239 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    |||||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  2696784 tgatgtttggattatgaaggaatatggaaataaagagtcttggattaaattg 2696733  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 4142186 - 4142135
Alignment:
Q  239 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  4142186 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 4142135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 4157996 - 4157945
Alignment:
Q  239 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    |||||||||||||||||||||||| ||||||||||| ||||||| |||||||    
T  4157996 tgatgtttggcttatgaaggaatatggaaataaagagtcttggactaaattg 4157945  T

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Target: chr3; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 3754598 - 3754650
Alignment:
Q  238 ttgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    ||||||||||| ||||||||||||| ||||||||||| ||||||| |||||||    
T  3754598 ttgatgtttgggttatgaaggaatatggaaataaagagtcttggactaaattg 3754650  T

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Target: chr3; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 240 - 303
Target Start/End: Complemental strand, 7324482 - 7324419
Alignment:
Q  240 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattgattagtcttccta 303  Q
    ||||||||| |||||||||| |||||||||||||| ||||||| |||||||  |||| ||||||    
T  7324482 gatgtttggattatgaaggactacggaaataaagagtcttggactaaattgtatagtgttccta 7324419  T

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Target: chr3; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 1437996 - 1438045
Alignment:
Q  240 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  1437996 gatgtttgg-ttatgaaggaatatggaaataaagactcttggattaaattg 1438045  T

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Target: chr3; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 2456249 - 2456299
Alignment:
Q  240 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||| |||||||    
T  2456249 gatgtttgggttatgaaggaatatggaaataaagactcttggactaaattg 2456299  T

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Target: chr3; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 240 - 289
Target Start/End: Original strand, 13498224 - 13498273
Alignment:
Q  240 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaatt 289  Q
    ||||||||| ||||||||||||| ||||||||||| ||||||| ||||||    
T  13498224 gatgtttggattatgaaggaatatggaaataaagagtcttggactaaatt 13498273  T

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Target: chr3; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 242 - 290
Target Start/End: Original strand, 23197014 - 23197062
Alignment:
Q  242 tgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    ||||||||| ||||||||||| |||||| |||||||||||| |||||||    
T  23197014 tgtttggctgatgaaggaatatggaaatgaagaatcttggactaaattg 23197062  T

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Target: chr3; HSP #10
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 1891116 - 1891065
Alignment:
Q  239 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    |||||||||| ||||||||||| | ||||||||||| ||||||| |||||||    
T  1891116 tgatgtttggattatgaaggaacatggaaataaagactcttggactaaattg 1891065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 239 - 290
Target Start/End: Complemental strand, 7432106 - 7432055
Alignment:
Q  239 tgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    ||||||||||  |||||||||||| |||||||||||||| |||| |||||||    
T  7432106 tgatgtttggagtatgaaggaatatggaaataaagaatcgtggactaaattg 7432055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 238 - 289
Target Start/End: Complemental strand, 9608397 - 9608346
Alignment:
Q  238 ttgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaatt 289  Q
    ||||||||||| ||||||||||||| ||||||| ||| ||||||| ||||||    
T  9608397 ttgatgtttgggttatgaaggaatatggaaatatagattcttggactaaatt 9608346  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 771550 - 771500
Alignment:
Q  240 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    ||||||||| ||||||||||||| ||||||| ||| ||||||| |||||||    
T  771550 gatgtttgggttatgaaggaatatggaaatacagactcttggactaaattg 771500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 2442039 - 2442089
Alignment:
Q  240 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    ||||||||| |||||||||| || ||||||||||| ||||||| |||||||    
T  2442039 gatgtttggattatgaaggagtatggaaataaagattcttggactaaattg 2442089  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 7334290 - 7334240
Alignment:
Q  240 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    ||||||||| | |||||||| |||||||||||||| ||||||| |||||||    
T  7334290 gatgtttggatcatgaaggactacggaaataaagagtcttggactaaattg 7334240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 7942485 - 7942535
Alignment:
Q  240 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    ||||||||| |||||||||| || || |||||||| |||||||||||||||    
T  7942485 gatgtttggattatgaaggagtatggtaataaagagtcttggattaaattg 7942535  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 290
Target Start/End: Original strand, 2631358 - 2631407
Alignment:
Q  241 atgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    |||||||| ||||||||||||| |||||| |||| ||||||| |||||||    
T  2631358 atgtttggattatgaaggaatatggaaatcaagagtcttggactaaattg 2631407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 282
Target Start/End: Original strand, 2459277 - 2459317
Alignment:
Q  242 tgtttggcttatgaaggaatacggaaataaagaatcttgga 282  Q
    ||||||| ||||||||||||| ||||||||||| |||||||    
T  2459277 tgtttggattatgaaggaatatggaaataaagagtcttgga 2459317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 290
Target Start/End: Complemental strand, 23231031 - 23230983
Alignment:
Q  242 tgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    ||||||||| ||||| ||||| |||||| |||| |||||||||||||||    
T  23231031 tgtttggctaatgaaagaatatggaaatgaagagtcttggattaaattg 23230983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 240 - 290
Target Start/End: Original strand, 36577366 - 36577416
Alignment:
Q  240 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    ||||||||| ||||||||||||| ||||||||||| |||||||||||||||    
T  36577366 gatgtttggattatgaaggaatatggaaataaagagtcttggattaaattg 36577416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Complemental strand, 7168738 - 7168691
Alignment:
Q  243 gtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    |||||||||||||||||||| |||||||| || ||||||| |||||||    
T  7168738 gtttggcttatgaaggaatatggaaataacgattcttggactaaattg 7168691  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 290
Target Start/End: Complemental strand, 7160805 - 7160755
Alignment:
Q  240 gatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    |||||||||||||||||||| || |||||||| || ||||||| |||||||    
T  7160805 gatgtttggcttatgaaggagtatggaaataatgattcttggactaaattg 7160755  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 93 - 137
Target Start/End: Original strand, 33038010 - 33038054
Alignment:
Q  93 ttgtgtgtcattgtttctcttcatttggggaaggaatcttatcaa 137  Q
    ||||| ||||||||||||||| |||||| ||||||||| ||||||    
T  33038010 ttgtgcgtcattgtttctcttgatttggagaaggaatcgtatcaa 33038054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 34; Significance: 0.0000000005; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 241 - 290
Target Start/End: Complemental strand, 24417536 - 24417487
Alignment:
Q  241 atgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    |||||||| ||||||| ||||| ||||||||||||||||||| |||||||    
T  24417536 atgtttggattatgaaagaatatggaaataaagaatcttggactaaattg 24417487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 244 - 289
Target Start/End: Complemental strand, 9819876 - 9819831
Alignment:
Q  244 tttggcttatgaaggaatacggaaataaagaatcttggattaaatt 289  Q
    ||||||||||||||||||| ||||||| ||| ||||||| ||||||    
T  9819876 tttggcttatgaaggaatatggaaatagagactcttggactaaatt 9819831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 4183193 - 4183153
Alignment:
Q  99 gtcattgtttctcttcatttggggaaggaatcttatcaaga 139  Q
    |||||||||||||||||||||  |||||| |||||||||||    
T  4183193 gtcattgtttctcttcatttgcagaaggagtcttatcaaga 4183153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 99 - 139
Target Start/End: Complemental strand, 4744037 - 4743997
Alignment:
Q  99 gtcattgtttctcttcatttggggaaggaatcttatcaaga 139  Q
    |||||||||||||||||||||  |||||| |||||||||||    
T  4744037 gtcattgtttctcttcatttgcagaaggagtcttatcaaga 4743997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0044 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0044
Description:

Target: scaffold0044; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 238 - 290
Target Start/End: Original strand, 89141 - 89193
Alignment:
Q  238 ttgatgtttggcttatgaaggaatacggaaataaagaatcttggattaaattg 290  Q
    ||||| ||||| ||||||||||||| ||||||||||| ||||||| |||||||    
T  89141 ttgatatttgggttatgaaggaatatggaaataaagagtcttggactaaattg 89193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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