View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_low_28 (Length: 300)
Name: NF11614_low_28
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_low_28 |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 13 - 282
Target Start/End: Complemental strand, 8177406 - 8177137
Alignment:
| Q |
13 |
gagatgaaagagtaattgaggatactcgattggaaacttgtaattcaaagaaagaaggtttggatttcataaaaaatgaatgcatttacccaatccgcca |
112 |
Q |
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| T |
8177406 |
gagatgaaagagtaattgaggatactcgattggaaacttgtaattcaaagaaagaagctttggatttcataaaaaatgaatgcatttacccaatccgcca |
8177307 |
T |
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| Q |
113 |
atcaatatgtcttgatgaccactccattggaatggtttggattcttcctcatgctaatgatgagaagtataaagcagatatgggttatgctattggattc |
212 |
Q |
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| T |
8177306 |
atcaatatgtcttgatgaccactccattggaatggtttggattcttcctcatgctaatgatgagaaatataaagcagatatgggttatgctattggattc |
8177207 |
T |
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| Q |
213 |
aactattggggtcaagggattgccactaatgcagtgaagattcttctgtcaaaagtgttccatgagttcc |
282 |
Q |
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| T |
8177206 |
aactattggggtcaagggattgccactaatgcagtgaagattcttctgtcaaaagtgttccatgagttcc |
8177137 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 76 - 262
Target Start/End: Complemental strand, 8169756 - 8169573
Alignment:
| Q |
76 |
atttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactccattggaatggtttggattcttcctcatgctaatgatga |
175 |
Q |
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| T |
8169756 |
atttcataaaaaatgattgcatttacccattccaacaatcaatatgtcttaatgatcactctattggaattgtttttgtccttccttatcc---tgatgc |
8169660 |
T |
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| Q |
176 |
gaagtataaagcagatatgggttatgctattggattcaactattggggtcaagggattgccactaatgcagtgaagattcttctgtc |
262 |
Q |
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| T |
8169659 |
aaagtttaaagcagatttaggttatgctattgggtttaactattggggccaaggtgtagccaccaaagcagtgaagattcttttgtc |
8169573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 71 - 280
Target Start/End: Complemental strand, 8172392 - 8172186
Alignment:
| Q |
71 |
tttggatttcataaaaaatgaatgcatttacccaatccgccaatcaatatgtcttgatgaccactccattggaatggtttggattcttcctcatgctaat |
170 |
Q |
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| T |
8172392 |
tttgaatttcataaagaaagattgtatttacccattccaacaatcaatatgtcttgatgatcactctattggaattgtttttgttcttccaatttcttat |
8172293 |
T |
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| Q |
171 |
gatgagaagtataaagcagatatgggttatgctattggattcaactattggggtcaagggattgccactaatgcagtgaagattcttctgtcaaaagtgt |
270 |
Q |
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| T |
8172292 |
gca---aagtttaaagcagatttaggttttgctattggattcaattattggggccaaggtatagccacaaaagcacttaagattcttttgtctcgagtgt |
8172196 |
T |
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| Q |
271 |
tccatgagtt |
280 |
Q |
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| T |
8172195 |
tccaagagtt |
8172186 |
T |
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