View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11614_low_29 (Length: 250)

Name: NF11614_low_29
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11614_low_29
NF11614_low_29
[»] chr1 (3 HSPs)
chr1 (13-231)||(38953447-38953665)
chr1 (81-228)||(47243967-47244114)
chr1 (82-190)||(30198155-30198263)
[»] chr3 (3 HSPs)
chr3 (84-230)||(25452584-25452730)
chr3 (81-231)||(48766401-48766551)
chr3 (138-231)||(17229662-17229755)
[»] chr4 (1 HSPs)
chr4 (96-214)||(48425664-48425782)
[»] chr6 (2 HSPs)
chr6 (81-229)||(11106714-11106862)
chr6 (135-229)||(3535505-3535600)
[»] chr2 (1 HSPs)
chr2 (82-221)||(40799786-40799925)
[»] chr5 (1 HSPs)
chr5 (140-228)||(13136638-13136726)
[»] chr7 (3 HSPs)
chr7 (130-231)||(22042137-22042239)
chr7 (160-226)||(14670524-14670589)
chr7 (138-231)||(27446581-27446675)


Alignment Details
Target: chr1 (Bit Score: 195; Significance: 1e-106; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 13 - 231
Target Start/End: Original strand, 38953447 - 38953665
Alignment:
Q  13 gagaccatttatcacatatttcgttactagctcatatgtgatacaattcgagcttgtgacggttttaagggaatcagattccttgctgttacagcagggt 112  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  38953447 gagaccatttatcacatatttcgttactagctcatgtgtgatacaatccgagcttgtgatggttttaagggaatcagattccttgctgttacagcagggt 38953546  T
Q  113 gatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtgattaaatctggaccgacggatctcatatttac 212  Q
    |||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38953547 gatgtaaatgatccaggccattcaattttaaattgatggctgagattattttactgtgtgaaactgtgattaaatctggaccgacggatctcatatttac 38953646  T
Q  213 ggctgagatatgctacagc 231  Q
    ||||||||| |||||||||    
T  38953647 ggctgagatgtgctacagc 38953665  T

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Target: chr1; HSP #2
Raw Score: 96; E-Value: 3e-47
Query Start/End: Original strand, 81 - 228
Target Start/End: Original strand, 47243967 - 47244114
Alignment:
Q  81 gggaatcagattccttgctgttacagcagggtgatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtg 180  Q
    ||||||||||||||| | ||||||||||||||| ||||| ||||| || | ||||||||||||||||||||||||||||||||||||||||||||| |||    
T  47243967 gggaatcagattcctcgttgttacagcagggtgttgtaactgatctaggccattcaattttaaattgatggctgagattattttactgtgtgaaaccgtg 47244066  T
Q  181 attaaatctggaccgacggatctcatatttacggctgagatatgctac 228  Q
    ||||||| ||||||||| |||||||||||||||  |||||| ||||||    
T  47244067 attaaatatggaccgactgatctcatatttacgtttgagatgtgctac 47244114  T

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Target: chr1; HSP #3
Raw Score: 81; E-Value: 3e-38
Query Start/End: Original strand, 82 - 190
Target Start/End: Original strand, 30198155 - 30198263
Alignment:
Q  82 ggaatcagattccttgctgttacagcagggtgatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtga 181  Q
    ||||||||||||| |||||||||||||||||| ||||| ||||| ||   ||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30198155 ggaatcagattccctgctgttacagcagggtgctgtaactgatctaggtcattcaattttaaattgatggctgagattattttactgtgtgaaactgtga 30198254  T
Q  182 ttaaatctg 190  Q
    |||||||||    
T  30198255 ttaaatctg 30198263  T

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Target: chr3 (Bit Score: 119; Significance: 7e-61; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 119; E-Value: 7e-61
Query Start/End: Original strand, 84 - 230
Target Start/End: Original strand, 25452584 - 25452730
Alignment:
Q  84 aatcagattccttgctgttacagcagggtgatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtgatt 183  Q
    ||||||||||| |||||||||||||||||| ||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  25452584 aatcagattccctgctgttacagcagggtgctgtaactgatccagaccattcaattttaaattgatggctgagattattttactgtgtgaaactgtgatt 25452683  T
Q  184 aaatctggaccgacggatctcatatttacggctgagatatgctacag 230  Q
    ||||||||||||||||||||||||| ||| | |||||||||||||||    
T  25452684 aaatctggaccgacggatctcatatctactgttgagatatgctacag 25452730  T

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Target: chr3; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 81 - 231
Target Start/End: Complemental strand, 48766551 - 48766401
Alignment:
Q  81 gggaatcagattccttgctgttacagcagggtgatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtg 180  Q
    |||||||||||||| |||||||||||||||||| ||||| |||||||| | |||||||||||||||||||||||||||||||||||  ||||||| ||||    
T  48766551 gggaatcagattccctgctgttacagcagggtgctgtaactgatccaggccattcaattttaaattgatggctgagattattttacaatgtgaaattgtg 48766452  T
Q  181 attaaatctggaccgacggatctcatatttacggctgagatatgctacagc 231  Q
    |||||||||| ||||||||||||||||| ||||| |||||| |||||||||    
T  48766451 attaaatctgaaccgacggatctcatatctacggttgagatgtgctacagc 48766401  T

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Target: chr3; HSP #3
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 138 - 231
Target Start/End: Original strand, 17229662 - 17229755
Alignment:
Q  138 ttttaaattgatggctgagattattttactgtgtgaaactgtgattaaatctggaccgacggatctcatatttacggctgagatatgctacagc 231  Q
    |||||||||||||| ||| ||||||||||||||| | |||||||||||||||||||||| ||||||||||| ||||| ||| || | |||||||    
T  17229662 ttttaaattgatggttgaaattattttactgtgtaagactgtgattaaatctggaccgatggatctcatatctacggttgaaatgtactacagc 17229755  T

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Target: chr4 (Bit Score: 87; Significance: 8e-42; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 87; E-Value: 8e-42
Query Start/End: Original strand, 96 - 214
Target Start/End: Original strand, 48425664 - 48425782
Alignment:
Q  96 tgctgttacagcagggtgatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtgattaaatctggaccg 195  Q
    |||||||||||||||||| ||||| ||||||| || |||| |||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||    
T  48425664 tgctgttacagcagggtgctgtaattgatccaaaccattctattttaaattgatggctgagattattttactgtgtgaaactgtgattagatctgaaccg 48425763  T
Q  196 acggatctcatatttacgg 214  Q
    ||||||||||||| |||||    
T  48425764 acggatctcatatctacgg 48425782  T

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Target: chr6 (Bit Score: 77; Significance: 8e-36; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 77; E-Value: 8e-36
Query Start/End: Original strand, 81 - 229
Target Start/End: Original strand, 11106714 - 11106862
Alignment:
Q  81 gggaatcagattccttgctgttacagcagggtgatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtg 180  Q
    |||||||||||||| || || ||||| |||||| |||||||||| ||| | ||| |||||||||||||||| ||||||||||||| ||||||||| ||||    
T  11106714 gggaatcagattccctgttgatacagtagggtgttgtaaatgattcaggccatttaattttaaattgatggttgagattattttattgtgtgaaattgtg 11106813  T
Q  181 attaaatctggaccgacggatctcatatttacggctgagatatgctaca 229  Q
    |||||||||||| ||||| || |||||| ||||| |||||| |||||||    
T  11106814 attaaatctggatcgacgaatgtcatatctacggttgagatgtgctaca 11106862  T

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Target: chr6; HSP #2
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 135 - 229
Target Start/End: Original strand, 3535505 - 3535600
Alignment:
Q  135 caattttaaattgatggctgagattattttactgtgtgaaactgtgatt-aaatctggaccgacggatctcatatttacggctgagatatgctaca 229  Q
    ||||||||||||||| || ||||| |||| ||||| ||||||||||||| ||| |||||||||| ||||||||||  | || ||||||||||||||    
T  3535505 caattttaaattgattgccgagatcatttcactgtatgaaactgtgattaaaaactggaccgaccgatctcatatccatggttgagatatgctaca 3535600  T

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Target: chr2 (Bit Score: 72; Significance: 7e-33; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 7e-33
Query Start/End: Original strand, 82 - 221
Target Start/End: Original strand, 40799786 - 40799925
Alignment:
Q  82 ggaatcagattccttgctgttacagcagggtgatgtaaatgatccagacaattcaattttaaattgatggctgagattattttactgtgtgaaactgtga 181  Q
    ||||||||||||| || ||||||| ||||||| ||||| | |||||| | |||||||||||||||||||| |||||| |||||||| ||||||||| |||    
T  40799786 ggaatcagattccctgttgttacatcagggtgctgtaactaatccaggccattcaattttaaattgatggatgagatcattttactttgtgaaactttga 40799885  T
Q  182 ttaaatctggaccgacggatctcatatttacggctgagat 221  Q
    |||||||||||||||| ||  |||||| ||||| ||||||    
T  40799886 ttaaatctggaccgactgaattcatatctacggttgagat 40799925  T

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Target: chr5 (Bit Score: 69; Significance: 5e-31; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 69; E-Value: 5e-31
Query Start/End: Original strand, 140 - 228
Target Start/End: Original strand, 13136638 - 13136726
Alignment:
Q  140 ttaaattgatggctgagattattttactgtgtgaaactgtgattaaatctggaccgacggatctcatatttacggctgagatatgctac 228  Q
    |||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||||| ||||| |||||| ||||||    
T  13136638 ttaaattgatggctgagattatattactgtgtaaaactgtgattaaatctggaccgacggatctcatatctacggttgagatgtgctac 13136726  T

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Target: chr7 (Bit Score: 55; Significance: 1e-22; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 130 - 231
Target Start/End: Complemental strand, 22042239 - 22042137
Alignment:
Q  130 caattcaattttaaattgatggctgagattattttactgtgtgaaactgtgatt-aaatctggaccgacggatctcatatttacggctgagatatgctac 228  Q
    ||||||||||||||||||||| |||| || |||||||||||| ||||||||||| ||||||| |||||  |||||||||| ||||  |||||||||||||    
T  22042239 caattcaattttaaattgatgactgaaatcattttactgtgtaaaactgtgattaaaatctgaaccgatcgatctcatatctacgattgagatatgctac 22042140  T
Q  229 agc 231  Q
    |||    
T  22042139 agc 22042137  T

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Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 160 - 226
Target Start/End: Original strand, 14670524 - 14670589
Alignment:
Q  160 attttactgtgtgaaactgtgattaaatctggaccgacggatctcatatttacggctgagatatgct 226  Q
    |||||||||||||||||||||||||| ||| ||||||| |||||||||| ||| | |||||| ||||    
T  14670524 attttactgtgtgaaactgtgattaagtct-gaccgacagatctcatatctacagttgagatgtgct 14670589  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 138 - 231
Target Start/End: Complemental strand, 27446675 - 27446581
Alignment:
Q  138 ttttaaattgatggctgagattattttactgtgtgaaactgtgattaaa-tctggaccgacggatctcatatttacggctgagatatgctacagc 231  Q
    ||||||||| |||||||| || |||||| | || |||||| |||||||| ||| |||||||  || | ||||||||||||||||| | |||||||    
T  27446675 ttttaaattaatggctgaaatcattttattatgcgaaactatgattaaaatctagaccgaccaattttatatttacggctgagatgtactacagc 27446581  T

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