View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11614_low_31 (Length: 244)
Name: NF11614_low_31
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_low_31 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 212; Significance: 1e-116; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7519723 - 7519946
Alignment:
| Q |
1 |
accatcaagttcaactctggttggaaaagctcaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgacaagt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7519723 |
accatcaagttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgacaagt |
7519822 |
T |
|
| Q |
101 |
gatgacctgtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
7519823 |
gatgacctgtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagataattaaggaactt |
7519922 |
T |
|
| Q |
201 |
agtaagagaattgaggcccttaat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7519923 |
agtaagagaattgaggcccttaat |
7519946 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 193; E-Value: 1e-105
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 7129484 - 7129260
Alignment:
| Q |
1 |
accatcaagttcaactctggttggaaaagctcaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgacaagt |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||| |||||||||||||||||||||||||| |
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|
| T |
7129484 |
accatcaagttcaactctggttggaaaagctcaaggatgctcttgatgatgccgatgacttgcttgatgactttaacaccgaagacttgaggcgacaagt |
7129385 |
T |
|
| Q |
101 |
gatgacctgtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
200 |
Q |
| |
|
||||||| | ||||||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7129384 |
gatgaccaatcacaagaaggctaaaaaggttcgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
7129285 |
T |
|
| Q |
201 |
agtaagagaattgaggcccttaatt |
225 |
Q |
| |
|
||||||||||||||||||||||||| |
|
|
| T |
7129284 |
agtaagagaattgaggcccttaatt |
7129260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7494056 - 7494279
Alignment:
| Q |
1 |
accatcaagttcaactctggttggaaaagctcaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgacaagt |
100 |
Q |
| |
|
|||||||||||||||| |||||||||||||| |||||||||||||||||||||||| ||||||| |||||||| ||||| ||||||||||||||||| || |
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|
| T |
7494056 |
accatcaagttcaactgtggttggaaaagctgaaagatgctcttgatgatgccgatgacttgctcgatgactttaacacggaagacttgaggcgacaggt |
7494155 |
T |
|
| Q |
101 |
gatgacctgtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
200 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
7494156 |
gatgaccagtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
7494255 |
T |
|
| Q |
201 |
agtaagagaattgaggcccttaat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7494256 |
agtaagagaattgaggcccttaat |
7494279 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7481654 - 7481877
Alignment:
| Q |
1 |
accatcaagttcaactctggttggaaaagctcaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgacaagt |
100 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||| ||||||| |||||||| ||||| |||||||||||||||||||| |
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|
| T |
7481654 |
accatcaagttcaactctggctggaaaagctcaaagatgctcttgatgatgccgatgacttgctcgatgactttaacactgaagacttgaggcgacaagt |
7481753 |
T |
|
| Q |
101 |
gatgacctgtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
200 |
Q |
| |
|
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7481754 |
catgaccagtaacaagaaggctaaaaagttttacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
7481853 |
T |
|
| Q |
201 |
agtaagagaattgaggcccttaat |
224 |
Q |
| |
|
||||||||||||||||| |||||| |
|
|
| T |
7481854 |
agtaagagaattgaggctcttaat |
7481877 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7722758 - 7722535
Alignment:
| Q |
1 |
accatcaagttcaactctggttggaaaagctcaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgacaagt |
100 |
Q |
| |
|
|||||||||||||||||||| | ||||| ||||||||||||||||||||||||||| || ||||||||||||| ||||| |||||||||||||||||||| |
|
|
| T |
7722758 |
accatcaagttcaactctggcttgaaaatctcaaagatgctcttgatgatgccgatgacgtgcttgatgactttaacactgaagacttgaggcgacaagt |
7722659 |
T |
|
| Q |
101 |
gatgacctgtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
200 |
Q |
| |
|
||||||| ||||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7722658 |
gatgaccagtaacaagaaggctaaaaagttttgcatcttcttctcatcatccaaccaacttctcttttcatacaaaatggttcagaaaattaaggaactt |
7722559 |
T |
|
| Q |
201 |
agtaagagaattgaggcccttaat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7722558 |
agtaagagaattgaggcccttaat |
7722535 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 32 - 224
Target Start/End: Original strand, 7506351 - 7506543
Alignment:
| Q |
32 |
caaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgacaagtgatgacctgtaacaagaaggctaaaaagttt |
131 |
Q |
| |
|
||||||||||||||||||||| ||| ||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
7506351 |
caaagatgctcttgatgatgctgatgacttgctcgatgacttcaacaccgaagacttgaggcgacaagtgatgaccagtaacaagaaggctaaaaagttt |
7506450 |
T |
|
| Q |
132 |
cacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaacttagtaagagaattgaggcccttaat |
224 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
|
|
| T |
7506451 |
cacatcttcttctcatcatccaaccaacttctcttttcttacaaaatggttcagaaaattaatgaacttagtaagagaattgaggcccttaat |
7506543 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 224
Target Start/End: Original strand, 7527773 - 7527996
Alignment:
| Q |
1 |
accatcaagttcaactctggttggaaaagctcaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgacaagt |
100 |
Q |
| |
|
|||||||||||||||| ||| ||||||| |||||||||||| |||||||||||||| |||| || ||| |||||||||| ||||| ||||||||||||| |
|
|
| T |
7527773 |
accatcaagttcaactatggctggaaaatctcaaagatgcttttgatgatgccgatgactttctcgattacttcaacacggaagaactgaggcgacaagt |
7527872 |
T |
|
| Q |
101 |
gatgacctgtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
200 |
Q |
| |
|
||||||| | ||||||| ||||||||| | | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7527873 |
gatgaccaatcacaagaaagctaaaaaggtccgcatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
7527972 |
T |
|
| Q |
201 |
agtaagagaattgaggcccttaat |
224 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
7527973 |
agtaagagaattgaggcccttaat |
7527996 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 128; E-Value: 3e-66
Query Start/End: Original strand, 1 - 224
Target Start/End: Complemental strand, 7714471 - 7714248
Alignment:
| Q |
1 |
accatcaagttcaactctggttggaaaagctcaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgacaagt |
100 |
Q |
| |
|
||||| |||||||||| ||| ||||||| ||||||||||||||| ||||||||||| |||| || || |||||||||| |||||| ||||| ||||||| |
|
|
| T |
7714471 |
accatgaagttcaactatggctggaaaatctcaaagatgctctttatgatgccgatgactttctcaattacttcaacacggaagacctgaggtgacaagt |
7714372 |
T |
|
| Q |
101 |
gatgacctgtaacaagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaactt |
200 |
Q |
| |
|
||||||| | ||||||| ||||||||| || |||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
7714371 |
gatgaccaatcacaagaaagctaaaaaggtttgcatcttcttctcatcatccaaccaacttctcttttctttcaaaatggttcagaaaattaaggaacta |
7714272 |
T |
|
| Q |
201 |
agtaagagaattgaggcccttaat |
224 |
Q |
| |
|
|||||||||||||||| ||||||| |
|
|
| T |
7714271 |
agtaagagaattgaggaccttaat |
7714248 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 13 - 216
Target Start/End: Complemental strand, 16750769 - 16750566
Alignment:
| Q |
13 |
aactctggttggaaaagctcaaagatgctcttgatgatgccgataacttgcttgatgacttcaacaccgaagacttgaggcgacaagtgatgacctgtaa |
112 |
Q |
| |
|
|||| ||| |||| |||||||||||| ||||||||||||| ||| ||||||||||||| | || ||||||||| ||| ||||| |||| | |
|
|
| T |
16750769 |
aactatgggtggagaagctcaaagatactcttgatgatgctgatgacttgcttgatgatgtttttactgaagacttgtagcgtcaagtactgacaaaaga |
16750670 |
T |
|
| Q |
113 |
caagaaggctaaaaagtttcacatcttcttctcatcatccaaccagcttctcttttcttacaaaatggttcagaaaattaaggaacttagtaagagaatt |
212 |
Q |
| |
|
|||||||||||||||| ||| ||||||||| || || |||||||||||||||||||| | || |||| ||||||||||||| ||||||| ||| ||||| |
|
|
| T |
16750669 |
caagaaggctaaaaaggttcgcatcttcttatcctcttccaaccagcttctcttttcgtttaacatggctcagaaaattaagaaacttaggaagcgaatt |
16750570 |
T |
|
| Q |
213 |
gagg |
216 |
Q |
| |
|
|||| |
|
|
| T |
16750569 |
gagg |
16750566 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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