View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11614_low_35 (Length: 218)

Name: NF11614_low_35
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11614_low_35
NF11614_low_35
[»] chr4 (11 HSPs)
chr4 (1-201)||(1678643-1678843)
chr4 (1-201)||(2801977-2802175)
chr4 (40-90)||(21606595-21606645)
chr4 (40-84)||(7367561-7367605)
chr4 (40-88)||(27131676-27131724)
chr4 (32-75)||(21886432-21886475)
chr4 (43-81)||(9018880-9018918)
chr4 (32-74)||(21886517-21886559)
chr4 (30-84)||(22402381-22402435)
chr4 (44-82)||(41052607-41052645)
chr4 (40-84)||(25260541-25260585)
[»] chr3 (5 HSPs)
chr3 (38-83)||(2401481-2401526)
chr3 (40-83)||(35335609-35335652)
chr3 (40-84)||(33331951-33331995)
chr3 (30-75)||(651410-651455)
chr3 (40-88)||(36895369-36895417)
[»] chr8 (6 HSPs)
chr8 (40-84)||(16330989-16331033)
chr8 (30-88)||(30921011-30921068)
chr8 (40-82)||(3943758-3943800)
chr8 (40-81)||(9581882-9581923)
chr8 (40-84)||(6501503-6501546)
chr8 (40-80)||(11556955-11556995)
[»] chr6 (13 HSPs)
chr6 (40-84)||(34443051-34443095)
chr6 (39-84)||(8805968-8806013)
chr6 (45-98)||(32862750-32862803)
chr6 (40-88)||(2468476-2468524)
chr6 (32-84)||(4240921-4240973)
chr6 (40-83)||(5663937-5663980)
chr6 (42-88)||(29670903-29670948)
chr6 (39-84)||(7086409-7086454)
chr6 (42-79)||(12630070-12630107)
chr6 (30-82)||(4323105-4323157)
chr6 (40-84)||(8013845-8013889)
chr6 (42-82)||(34406440-34406480)
chr6 (40-88)||(34443439-34443486)
[»] chr7 (1 HSPs)
chr7 (40-86)||(27531846-27531892)
[»] chr5 (5 HSPs)
chr5 (35-80)||(29587683-29587728)
chr5 (40-84)||(26208013-26208057)
chr5 (41-88)||(25734621-25734668)
chr5 (40-81)||(20407905-20407946)
chr5 (40-88)||(39828474-39828521)
[»] chr1 (5 HSPs)
chr1 (40-84)||(33318848-33318892)
chr1 (44-98)||(303693-303747)
chr1 (41-99)||(16567303-16567361)
chr1 (40-118)||(43328475-43328552)
chr1 (42-98)||(45462827-45462881)
[»] chr2 (1 HSPs)
chr2 (44-126)||(8518044-8518126)


Alignment Details
Target: chr4 (Bit Score: 185; Significance: 1e-100; HSPs: 11)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 1 - 201
Target Start/End: Original strand, 1678643 - 1678843
Alignment:
Q  1 acacaaacattgaacacaacaccgacagttagataccgctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggtt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||    
T  1678643 acacaaacattgaacacaacaccgacagttagataccgctaataatttgagaaaatgaaagtgattaaatgtaactacatgtgttggtatcttgttggtt 1678742  T
Q  101 tctgacaccgacacatgttagacaccgggcacaccttcactctaaactagcctaagatccttaatgatgggatagtttgtccattctttttatggtaaaa 200  Q
    |||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||    
T  1678743 tctgacaccgacacgtgttagacaccgggcacaccttcactctaaactagccgaagatccttaatgatggggtagtttgtccattctttttatggtaaaa 1678842  T
Q  201 g 201  Q
    |    
T  1678843 g 1678843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 170; E-Value: 2e-91
Query Start/End: Original strand, 1 - 201
Target Start/End: Complemental strand, 2802175 - 2801977
Alignment:
Q  1 acacaaacattgaacacaacaccgacagttagataccgctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggtt 100  Q
    |||||||||||||||||  |||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||    
T  2802175 acacaaacattgaacac--caccgacagttagataccgctaataatttgggagaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggtt 2802078  T
Q  101 tctgacaccgacacatgttagacaccgggcacaccttcactctaaactagcctaagatccttaatgatgggatagtttgtccattctttttatggtaaaa 200  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||    
T  2802077 tctgacaccgacatatgttagacaccgggcacaccttcactctaaactagccgaagatccttaatgatgggatagtttgtccattttttttatggtaaaa 2801978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 90
Target Start/End: Complemental strand, 21606645 - 21606595
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtat 90  Q
    ||||||||| ||||||| ||||||||||| |||||| ||||||||||||||    
T  21606645 taataatttaagaaaataaaagtgattaagtgtaactacatgtgttggtat 21606595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 7367561 - 7367605
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 84  Q
    |||||||||||||||||||| |||||| || ||||||||||||||    
T  7367561 taataatttgagaaaatgaaggtgattgaacgtaaccacatgtgt 7367605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 27131724 - 27131676
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 88  Q
    ||||||||| |||||||| |||| ||| |||||||||||||||||||||    
T  27131724 taataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggt 27131676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 32 - 75
Target Start/End: Original strand, 21886432 - 21886475
Alignment:
Q  32 gataccgctaataatttgagaaaatgaaagtgattaaatgtaac 75  Q
    ||||||| |||||||||||| |||||| ||||||||||||||||    
T  21886432 gataccggtaataatttgagtaaatgacagtgattaaatgtaac 21886475  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 43 - 81
Target Start/End: Complemental strand, 9018918 - 9018880
Alignment:
Q  43 taatttgagaaaatgaaagtgattaaatgtaaccacatg 81  Q
    |||||||||||||||||||| ||| ||||||||||||||    
T  9018918 taatttgagaaaatgaaagtaattgaatgtaaccacatg 9018880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 32 - 74
Target Start/End: Original strand, 21886517 - 21886559
Alignment:
Q  32 gataccgctaataatttgagaaaatgaaagtgattaaatgtaa 74  Q
    ||||||| ||||||||||||||||||| ||||||| |||||||    
T  21886517 gataccggtaataatttgagaaaatgatagtgattgaatgtaa 21886559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 84
Target Start/End: Original strand, 22402381 - 22402435
Alignment:
Q  30 tagataccgctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 84  Q
    |||| |||| |||||| ||||||||||  |||||||| |||||||||||||||||    
T  22402381 tagagaccggtaataaattgagaaaatagaagtgattgaatgtaaccacatgtgt 22402435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 82
Target Start/End: Original strand, 41052607 - 41052645
Alignment:
Q  44 aatttgagaaaatgaaagtgattaaatgtaaccacatgt 82  Q
    ||||| ||||||||||||| |||||||||||||||||||    
T  41052607 aatttaagaaaatgaaagtaattaaatgtaaccacatgt 41052645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 25260541 - 25260585
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 84  Q
    ||||||||| |||||||| |||| |||||||||||||| ||||||    
T  25260541 taataatttaagaaaatggaagtaattaaatgtaaccaaatgtgt 25260585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 38; Significance: 0.000000000001; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 38 - 83
Target Start/End: Complemental strand, 2401526 - 2401481
Alignment:
Q  38 gctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtg 83  Q
    ||||||||||||||||||| |||||||||||||||||| |||||||    
T  2401526 gctaataatttgagaaaatcaaagtgattaaatgtaactacatgtg 2401481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 40 - 83
Target Start/End: Original strand, 35335609 - 35335652
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtg 83  Q
    |||||||||||||||||||||||||||||||| |||||| ||||    
T  35335609 taataatttgagaaaatgaaagtgattaaatgcaaccacttgtg 35335652  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 33331995 - 33331951
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 84  Q
    ||||||||||||||||| |||||||||||||||||  ||||||||    
T  33331995 taataatttgagaaaataaaagtgattaaatgtaattacatgtgt 33331951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 30 - 75
Target Start/End: Complemental strand, 651455 - 651410
Alignment:
Q  30 tagataccgctaataatttgagaaaatgaaagtgattaaatgtaac 75  Q
    |||| ||| |||||||| ||||||||||||| ||||||||||||||    
T  651455 tagacaccactaataatatgagaaaatgaaattgattaaatgtaac 651410  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 36895369 - 36895417
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 88  Q
    ||||||||||| |||||  |||||||| ||||||| |||||||||||||    
T  36895369 taataatttgataaaatataagtgattgaatgtaatcacatgtgttggt 36895417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 37; Significance: 0.000000000005; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 16330989 - 16331033
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 84  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||    
T  16330989 taataatttaagaaaatgaaaatgattaaatgtaaccacatgtgt 16331033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 30 - 88
Target Start/End: Original strand, 30921011 - 30921068
Alignment:
Q  30 tagataccgctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 88  Q
    |||| |||||||||||||| | ||||||||||||||| ||||||| |||||||||||||    
T  30921011 tagacaccgctaataatttta-aaaatgaaagtgattgaatgtaagcacatgtgttggt 30921068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 82
Target Start/End: Original strand, 3943758 - 3943800
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgt 82  Q
    ||||||||| ||||||| ||||||||| |||||||||||||||    
T  3943758 taataatttaagaaaataaaagtgattgaatgtaaccacatgt 3943800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 9581882 - 9581923
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatg 81  Q
    ||||| ||| |||||||||||||||||||||||| |||||||    
T  9581882 taatagtttaagaaaatgaaagtgattaaatgtagccacatg 9581923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 6501503 - 6501546
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 84  Q
    ||||||||||||| ||||||| | |||||||||||||||||||||    
T  6501503 taataatttgagagaatgaaa-taattaaatgtaaccacatgtgt 6501546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 80
Target Start/End: Complemental strand, 11556995 - 11556955
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacat 80  Q
    |||||||||||||||||  |||||||| |||||||||||||    
T  11556995 taataatttgagaaaatttaagtgattgaatgtaaccacat 11556955  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 37; Significance: 0.000000000005; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 34443095 - 34443051
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 84  Q
    ||||||||||||||| ||||||||||| |||||||||||||||||    
T  34443095 taataatttgagaaagtgaaagtgattgaatgtaaccacatgtgt 34443051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 39 - 84
Target Start/End: Complemental strand, 8806013 - 8805968
Alignment:
Q  39 ctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 84  Q
    |||||||||||||||| ||||||||||| |||| ||||||||||||    
T  8806013 ctaataatttgagaaattgaaagtgattgaatgaaaccacatgtgt 8805968  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 45 - 98
Target Start/End: Complemental strand, 32862803 - 32862750
Alignment:
Q  45 atttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttgg 98  Q
    |||| ||||||||||||||||| ||||||||||| |||||  ||||||||||||    
T  32862803 atttaagaaaatgaaagtgattgaatgtaaccacgtgtgtcagtatcttgttgg 32862750  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 2468524 - 2468476
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 88  Q
    ||||||||| |||||||| |||| ||| |||||||||||||||||||||    
T  2468524 taataatttaagaaaatggaagtaattgaatgtaaccacatgtgttggt 2468476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 32 - 84
Target Start/End: Complemental strand, 4240973 - 4240921
Alignment:
Q  32 gataccgctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 84  Q
    ||||||| ||||||||| |||||||||||||||| |||||||| | |||||||    
T  4240973 gataccgttaataatttaagaaaatgaaagtgatgaaatgtaatcgcatgtgt 4240921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 40 - 83
Target Start/End: Complemental strand, 5663980 - 5663937
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtg 83  Q
    ||||||| ||| |||||| |||||||||||||||||||||||||    
T  5663980 taataatatgataaaatggaagtgattaaatgtaaccacatgtg 5663937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 42 - 88
Target Start/End: Original strand, 29670903 - 29670948
Alignment:
Q  42 ataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 88  Q
    ||||||||||||||||| | ||||| |||||||||||||||||||||    
T  29670903 ataatttgagaaaatgaca-tgattcaatgtaaccacatgtgttggt 29670948  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 39 - 84
Target Start/End: Original strand, 7086409 - 7086454
Alignment:
Q  39 ctaataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 84  Q
    |||||||||||||||| ||||||||||  |||| ||||||||||||    
T  7086409 ctaataatttgagaaattgaaagtgatggaatgaaaccacatgtgt 7086454  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 42 - 79
Target Start/End: Complemental strand, 12630107 - 12630070
Alignment:
Q  42 ataatttgagaaaatgaaagtgattaaatgtaaccaca 79  Q
    ||||||||||||||||||||| ||| ||||||||||||    
T  12630107 ataatttgagaaaatgaaagttatttaatgtaaccaca 12630070  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 30 - 82
Target Start/End: Original strand, 4323105 - 4323157
Alignment:
Q  30 tagataccgctaataatttgagaaaatgaaagtgattaaatgtaaccacatgt 82  Q
    ||||||| | ||| |||||||||||||  |||||||||||||| |||||||||    
T  4323105 tagatactgataacaatttgagaaaattgaagtgattaaatgttaccacatgt 4323157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 8013889 - 8013845
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 84  Q
    ||||||||||| |||||  |||||||| |||||||||||||||||    
T  8013889 taataatttgaaaaaatataagtgattgaatgtaaccacatgtgt 8013845  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 82
Target Start/End: Original strand, 34406440 - 34406480
Alignment:
Q  42 ataatttgagaaaatgaaagtgattaaatgtaaccacatgt 82  Q
    ||||||| ||||||||||||||||| |||||||||| ||||    
T  34406440 ataatttaagaaaatgaaagtgattgaatgtaaccatatgt 34406480  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Complemental strand, 34443486 - 34443439
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 88  Q
    ||||||||||| ||||||||| ||||| ||||||||||||| |||||||    
T  34443486 taataatttga-aaaatgaaaatgattgaatgtaaccacatttgttggt 34443439  T

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Target: chr7 (Bit Score: 35; Significance: 0.00000000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.00000000008
Query Start/End: Original strand, 40 - 86
Target Start/End: Complemental strand, 27531892 - 27531846
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttg 86  Q
    ||||||||||| ||||||||||||||||||||||| || ||||||||    
T  27531892 taataatttgaaaaaatgaaagtgattaaatgtaatcaaatgtgttg 27531846  T

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Target: chr5 (Bit Score: 34; Significance: 0.0000000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 34; E-Value: 0.0000000003
Query Start/End: Original strand, 35 - 80
Target Start/End: Original strand, 29587683 - 29587728
Alignment:
Q  35 accgctaataatttgagaaaatgaaagtgattaaatgtaaccacat 80  Q
    |||| ||||||||| |||||||| ||||||||||||||||||||||    
T  29587683 accggtaataatttaagaaaatggaagtgattaaatgtaaccacat 29587728  T

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Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Complemental strand, 26208057 - 26208013
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 84  Q
    ||||||||||||||||| |||||| || |||||||||||||||||    
T  26208057 taataatttgagaaaataaaagtgtttgaatgtaaccacatgtgt 26208013  T

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Target: chr5; HSP #3
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 41 - 88
Target Start/End: Complemental strand, 25734668 - 25734621
Alignment:
Q  41 aataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 88  Q
    |||||| ||||||||||||||||||||||| |||| |||| |||||||    
T  25734668 aataatatgagaaaatgaaagtgattaaatataactacatttgttggt 25734621  T

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Target: chr5; HSP #4
Raw Score: 30; E-Value: 0.00000007
Query Start/End: Original strand, 40 - 81
Target Start/End: Original strand, 20407905 - 20407946
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatg 81  Q
    ||||||||||| ||||||||||||||| ||||||| ||||||    
T  20407905 taataatttgaaaaaatgaaagtgattgaatgtaatcacatg 20407946  T

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Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 40 - 88
Target Start/End: Original strand, 39828474 - 39828521
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggt 88  Q
    |||||||||||||| |||||| | ||| |||||||||||||||||||||    
T  39828474 taataatttgagaatatgaaa-taattgaatgtaaccacatgtgttggt 39828521  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 40 - 84
Target Start/End: Original strand, 33318848 - 33318892
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgt 84  Q
    |||||| || ||||||||| |||||||||||||||||||||||||    
T  33318848 taataacttaagaaaatgagagtgattaaatgtaaccacatgtgt 33318892  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 98
Target Start/End: Original strand, 303693 - 303747
Alignment:
Q  44 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttgg 98  Q
    ||||||||||||||||||| ||| |||||||||||| ||||  ||||| ||||||    
T  303693 aatttgagaaaatgaaagtaattgaatgtaaccacaagtgtcagtatcgtgttgg 303747  T

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Target: chr1; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 41 - 99
Target Start/End: Original strand, 16567303 - 16567361
Alignment:
Q  41 aataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggt 99  Q
    |||||||| |||||||| || ||||| |||||||||||||||||  ||||| |||||||    
T  16567303 aataatttaagaaaatggaaatgattgaatgtaaccacatgtgtcagtatcgtgttggt 16567361  T

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Target: chr1; HSP #4
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 40 - 118
Target Start/End: Original strand, 43328475 - 43328552
Alignment:
Q  40 taataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggtttctgacaccgacacatgt 118  Q
    ||||||||||||||||||||| | ||| |||||||||||||||||   | || ||||||| || ||||||||| |||||    
T  43328475 taataatttgagaaaatgaaa-taatttaatgtaaccacatgtgtcattgtcgtgttggtgtcggacaccgactcatgt 43328552  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 42 - 98
Target Start/End: Original strand, 45462827 - 45462881
Alignment:
Q  42 ataatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttgg 98  Q
    ||||||||||||| ||||| ||||||||||||||||||||| ||||| || ||||||    
T  45462827 ataatttgagaaa-tgaaa-tgattaaatgtaaccacatgtattggtgtcatgttgg 45462881  T

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Target: chr2 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 44 - 126
Target Start/End: Original strand, 8518044 - 8518126
Alignment:
Q  44 aatttgagaaaatgaaagtgattaaatgtaaccacatgtgttggtatcttgttggtttctgacaccgacacatgttagacacc 126  Q
    |||||||||||||  |||| ||| |||||||| | |||||| ||| || ||||||  |||||||| ||||||||| |||||||    
T  8518044 aatttgagaaaatagaagtaattgaatgtaactaaatgtgtcggtgtcgtgttggcatctgacacagacacatgtcagacacc 8518126  T

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