View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_low_4 (Length: 707)
Name: NF11614_low_4
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_low_4 |
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Alignment Details
Target: chr2 (Bit Score: 476; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 476; E-Value: 0
Query Start/End: Original strand, 1 - 484
Target Start/End: Original strand, 37495103 - 37495586
Alignment:
| Q |
1 |
tcattagaagtgtctacaaatctagaactattttgttattttctttgtttcttcctgcattatatataaatgtgtattgaagtttattctctattgtata |
100 |
Q |
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| T |
37495103 |
tcattagaagtgtctacaaatctagaactattttgttattttctttgtttcttcctgcattatatataaatgtgtattgaagtttattctctattgtata |
37495202 |
T |
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| Q |
101 |
ataatactgtaaaacataaataagtgaattagagtgctaacagttatttggactgtgttaactatcatatgattctaaagttaacaactcatcaagcgtt |
200 |
Q |
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| T |
37495203 |
ataatactgtaaaacataaataagtgaattagagtgctaacagttatttggactgtgttaactatcatatgattctaaagttaacaactcatcgagcgtt |
37495302 |
T |
|
| Q |
201 |
aactatcatatgattcttaaatttataagttgacttggtacaacaaatcaggtttggtaagcaaataagatatgcgtctcgcaaagcaagggctgataca |
300 |
Q |
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| T |
37495303 |
aactatcatatgattcgtaaatttataagttgacttggtacaacaaatcaggtttggtaagcaaataagatatgcgtctcgcaaagcaagggctgataca |
37495402 |
T |
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| Q |
301 |
agaaaacgtgtgaaaggtagatttgttaaagcaggtgaagcatatgactatgatcctcttttgagcgaccactaaacattatctgcaatcacaaaatttt |
400 |
Q |
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| T |
37495403 |
agaaaacgtgtgaaaggtagatttgttaaagcaggtgaagcatatgactatgatcctcttttgagcgaccactaaacattatctgcaatcacaaaatttt |
37495502 |
T |
|
| Q |
401 |
ccttgcaggatatgattctgattggtaagctaaggtagtcccattgtgaatacattgttttgttcattcttaatcaaaacactt |
484 |
Q |
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| T |
37495503 |
ccttgcaggatatgattctgattggtaagctaaggtagtcccattgtgaatacattgttttgttcattcttaatcaaaacactt |
37495586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 483 - 689
Target Start/End: Original strand, 37495619 - 37495825
Alignment:
| Q |
483 |
ttaatgcagccagattattattcaaaacttgactactttggtggttggtacagacatgttaaagcattcaacaagttagtatttagaaatttagatgaaa |
582 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37495619 |
ttaatgcagccagattattattcaaaacttgactacttaggtggttggtacagacatgttaaagcattcaacaagttagtatttagaaatttagatgaaa |
37495718 |
T |
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| Q |
583 |
aataagatatagaaaaggttttgcatttggaaattgcagaataagagatttcttgtatacaaagatattgcatttagttatatatagtaagtaaaagagg |
682 |
Q |
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| T |
37495719 |
aataagatatagaaaaggttttgcatttagaaattgcagaataagagatttcttgtatacaaagatattgcatttagttatatatagtaagtaaaagagg |
37495818 |
T |
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| Q |
683 |
tactact |
689 |
Q |
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||||||| |
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| T |
37495819 |
tactact |
37495825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 250 - 317
Target Start/End: Original strand, 29461823 - 29461890
Alignment:
| Q |
250 |
aggtttggtaagcaaataagatatgcgtctcgcaaagcaagggctgatacaagaaaacgtgtgaaagg |
317 |
Q |
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||||||| |||| || |||||||||| ||||| || |||||||||||| ||||||||||||||||| |
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| T |
29461823 |
aggtttgataagaaagtaagatatgcttctcggaaggcaagggctgatgtcagaaaacgtgtgaaagg |
29461890 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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