View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_low_5 (Length: 689)
Name: NF11614_low_5
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_low_5 |
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Alignment Details
Target: chr1 (Bit Score: 578; Significance: 0; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 578; E-Value: 0
Query Start/End: Original strand, 11 - 673
Target Start/End: Complemental strand, 49691059 - 49690397
Alignment:
| Q |
11 |
catagggatgacaagaactatttatgaagaaattacttggagggcgaatgcctaactttcgggtatggttgcatttgaaagctgttatatagtttttcat |
110 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
49691059 |
catagggatgacaagaactatttatgaagaaattacttggagggtgaatgcctaattttcgggtatggttgcatttgaaagctgttatgtagtttttcat |
49690960 |
T |
|
| Q |
111 |
nnnnnnngttccaaaaggagtgggaggagggagggtaatattaacatagctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtca |
210 |
Q |
| |
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| T |
49690959 |
aaaaaaagttccaaaaggagtgggaggagggagggtaatattaacatagctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtca |
49690860 |
T |
|
| Q |
211 |
ataatggaaatagggttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagcagttt |
310 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||||||||| |
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| T |
49690859 |
ataatggaaatagtgttgccaatggaccagtgattatcaatctttttaacttggaagagttttcctcttttggttaactggacatacttcatagcagttt |
49690760 |
T |
|
| Q |
311 |
tgttgagattatcacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaa |
410 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||| |||| |
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| T |
49690759 |
tgttgagattatcacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaaaaaacccaagatttccacaaccaaa |
49690660 |
T |
|
| Q |
411 |
tgattctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaaggaacctaaaatgtaaa |
510 |
Q |
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| T |
49690659 |
tgagtctggacaatcaccactgtgtccatttcctttcctagttaagacaagtagcagtaacacagtcaaatgagagaacaaaaggaacctaaaatgtaaa |
49690560 |
T |
|
| Q |
511 |
acataaactaaagccattcaattgtgttaaacaatttgttccacacttttaatttgcacgacataaatatattcttcgaagcaaattgacacgctagttg |
610 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
49690559 |
acataaactaaagccattcaattgtgttaaacaatttgttccacacttttaatttgcacgacataaatatattctttgaagcaaattgacacgctagttg |
49690460 |
T |
|
| Q |
611 |
acttggaaaatgagtaccacacaagtcttatgaatttgtagttatcaccggccacaatgactt |
673 |
Q |
| |
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| T |
49690459 |
acttggaaaatgagtaccacacaagtcttgtaaatttgtagttatcaccggccacaatgactt |
49690397 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 319; E-Value: 1e-180
Query Start/End: Original strand, 11 - 494
Target Start/End: Complemental strand, 49679425 - 49678949
Alignment:
| Q |
11 |
catagggatgacaagaactatttatgaagaaattacttggagggcgaatgcctaactttcgggtatggttgcatttgaaagctgttatatagtttttcat |
110 |
Q |
| |
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||||||||||||||||||||||| ||||||||||||||||||| | |||||||| ||||||||| |||||||||||||||||||||| ||||||||||| |
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| T |
49679425 |
catagggatgacaagaactatttctgaagaaattacttggaggttggatgcctaattttcgggtacggttgcatttgaaagctgttatgtagtttttcat |
49679326 |
T |
|
| Q |
111 |
nnnnnnn-gttccaaaaggagtgggaggagggagggtaatattaacatagctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtc |
209 |
Q |
| |
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| T |
49679325 |
aaaaaaaagttccaaaaggagaggaaggaaggagtgtaatattaacatggctgaatgcctcacaagcattcttctccaaaagcttggtgatattggggtc |
49679226 |
T |
|
| Q |
210 |
aataatggaaatagggttgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagcagtt |
309 |
Q |
| |
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|||||||||||||| |||||||||||||| | |||||||||| ||| ||||||| ||||||||||| | |||| |||||||||| | ||||||||||||| |
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| T |
49679225 |
aataatggaaatagtgttgccaatggacccgcgattatcaatgtttgtaacttgaaagagttttcctcctttggttaactggacgtgcttcatagcagtt |
49679126 |
T |
|
| Q |
310 |
ttgttgagattatcacaaccttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaa |
409 |
Q |
| |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| || |||||||||||| |
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| T |
49679125 |
ttgttgagattatcacaaccttgaattgccaatgtaccacagcttgggaattcaactgttgtaaaagggtatttaatcaa--------ttccacaatcaa |
49679034 |
T |
|
| Q |
410 |
atgattctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaag |
494 |
Q |
| |
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| T |
49679033 |
atgattctggacaatcatcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaag |
49678949 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 27 - 649
Target Start/End: Complemental strand, 49686774 - 49686170
Alignment:
| Q |
27 |
actatttatgaagaaattacttggagggcgaatgcctaactttcgggtatggttgcatttgaaagctgttatatagtttttcatnnnnnnngttccaaaa |
126 |
Q |
| |
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||||||| ||||||||||| |||| ||| || |||| ||| |||||||| ||||||||||||||||||| | || |||||| ||||||||| |
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| T |
49686774 |
actatttttgaagaaattatttggtgggttgctggctaatttttgggtatggctgcatttgaaagctgttatgttgtctttcatataaaaagttccaaaa |
49686675 |
T |
|
| Q |
127 |
ggagtgggaggagggagggtaatattaacatagctgaatgcctcacaagcatttttctccaaaagcttggtgatattggggtcaataatggaaatagggt |
226 |
Q |
| |
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|||| |||||||||||| || |||| ||||||| || ||||| ||||||||||||| |||||||||||||| ||| | |||| ||||||||||| || |
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| T |
49686674 |
ggagagggaggagggagagtgatat---catagctaaaggcctcgcaagcatttttctgcaaaagcttggtgaaattcagatcaacaatggaaatagtgt |
49686578 |
T |
|
| Q |
227 |
tgccaatggaccagtgattatcaatctttttaacttggaagagttttccacttttgattaactggacatacttcatagcagttttgttgagattatcaca |
326 |
Q |
| |
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|| | || | ||| | ||| ||| ||||||| ||| ||||||| | |||| | |||||||| | ||| |||||||||||||||||| ||||| |
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| T |
49686577 |
tg------ggccgctcatttttaatgtttgtaacttgaaagtgttttcctcctttggtaaactggacgtgtttcgtagcagttttgttgagatcgtcaca |
49686484 |
T |
|
| Q |
327 |
accttgaattgccaatgcaccacagcttgggaattcaactgttgtaaaagggtatttaagaaacccaagacttccacaatcaaatgattctggacaatca |
426 |
Q |
| |
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||||||||||||||||||||||||| |||||||||||||||| ||||||||||| || || |||||| ||||||||||||||||||||||||||||| |
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|
| T |
49686483 |
accttgaattgccaatgcaccacagtttgggaattcaactgtggtaaaagggtagccaaccaatccaagatttccacaatcaaatgattctggacaatca |
49686384 |
T |
|
| Q |
427 |
tcactgtgtccatttcctttcctagttaagacaagtagcagtaacacaattaaatgagagaacaaaaggaacctaaaatgtaaaacataaactaaagcca |
526 |
Q |
| |
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|||||||||||||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||| ||||| ||| ||||| ||||| |
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| T |
49686383 |
tcactgtgtccatttcctttactagttaagacaagtagcagtaacacagtcaaatgagagaacaaaag---------atgtagtgcatgaactagagcca |
49686293 |
T |
|
| Q |
527 |
ttcaattgtgttaaacaatttgttccacactt-ttaatttgcacgacataaatatattcttcgaagcaaattgacacgc--tagttgacttggaaaatga |
623 |
Q |
| |
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| | ||| |||| |||||||||||||||||| ||||||||||| |||||||||||| ||| ||||| ||||||||||| ||||||||||||||||| |
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| T |
49686292 |
tcctattctgtttcacaatttgttccacacttgttaatttgcacaacataaatatatcctttgaagccaattgacacgctatagttgacttggaaaat-- |
49686195 |
T |
|
| Q |
624 |
gtaccacacaagtcttatgaatttgt |
649 |
Q |
| |
|
||| ||||||||| | ||||||||| |
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|
| T |
49686194 |
-tactacacaagtcatgtgaatttgt |
49686170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 529 - 643
Target Start/End: Complemental strand, 49678885 - 49678769
Alignment:
| Q |
529 |
caattgtgttaaacaatttgttccacacttt--taatttgcacgacataaatatattcttcgaagcaaattgacacgctagttgacttggaaaatgagta |
626 |
Q |
| |
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|||||||||| | |||||||||||||||||| ||||||| | |||||| |||| |||| ||| |||||||||| ||||||||||| |||||||||| |
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| T |
49678885 |
caattgtgtttatcaatttgttccacactttcttaatttgtagtgcataaagatatccttctgagccaattgacacgttagttgacttgtaaaatgagta |
49678786 |
T |
|
| Q |
627 |
ccacacaagtcttatga |
643 |
Q |
| |
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||||||||||||||||| |
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|
| T |
49678785 |
ccacacaagtcttatga |
49678769 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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