View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11614_low_7 (Length: 620)
Name: NF11614_low_7
Description: NF11614
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11614_low_7 |
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Alignment Details
Target: chr8 (Bit Score: 585; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 585; E-Value: 0
Query Start/End: Original strand, 1 - 605
Target Start/End: Complemental strand, 5997207 - 5996603
Alignment:
| Q |
1 |
ttcaacacaatcaaattttggcaaaatatatgtgctttaataaactttgcttgttttcagcgatcaacagcgagttctagtccaagctcaagaggttcta |
100 |
Q |
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||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5997207 |
ttcaaaacaatcaaattttggcaaaatatatgtgctttaataaactttgcttgttttcagcgatcaacagcgagttctagtccaagctcaagaggttcta |
5997108 |
T |
|
| Q |
101 |
agccattgactcctctcaagcacagcagtttagatggtaagagcatgttagaacgctggattgcagctaagccatgggagagcaggttaatgggagacat |
200 |
Q |
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|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5997107 |
agccattgactcctctcaagcacagcagtttagacggtaagagcatgttagaacgctggattgcagctaagccatgggagagcaggttaatgggagacat |
5997008 |
T |
|
| Q |
201 |
ctatttggattcacctggcatgactccattgtccaggaagagtgagaatgttgaactctccttcaactcatatcaacaacatggcttagtaaaagcaaga |
300 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5997007 |
ctatttggattcacctggcatgactccattgtccaggaagagtgagaatgttgaactctccttcaactcatatcaacaacatggcttagtaaaagcaaga |
5996908 |
T |
|
| Q |
301 |
aaaaatggtgcaacaactagggtttcgtctaaatctcatacaacaagccaatcaagtccgtcgtcttcggctacaagctccgaatgcatgtatgatgata |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |
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| T |
5996907 |
aaaaatggtgcaacaactagggtttcgtctaaatctcatacaacaagccaatcaagtccgtcgtcttcggctataagctccgaatgcatgtatgatgata |
5996808 |
T |
|
| Q |
401 |
gccctttatcaatttcatccacatctggatcaccaacgagggtggaagatgcaaagcaaggggaaactgggaaaccgacctacactaatttgacagtgtc |
500 |
Q |
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| T |
5996807 |
gccctttatcaatttcatccacatctggatcaccaacgagggtggaagatgcaaagcaaagggaaactgggaaaccgacctacactaatttgacagtgtc |
5996708 |
T |
|
| Q |
501 |
aaccaaagctaagctgaaagcgtgtagacattcgtctcccaatttgaagagactctttatggatgatgattgtctgtctcgtagcgcgcgaacaaatgtt |
600 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5996707 |
aaccaaagctaagctgaaagcgtgtagacattcgtctcccaatttgaagaaactctttatggatgatgattgtctgtctcgtagcgcgcgaacaaatgtt |
5996608 |
T |
|
| Q |
601 |
ctaag |
605 |
Q |
| |
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||||| |
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| T |
5996607 |
ctaag |
5996603 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 375 - 431
Target Start/End: Complemental strand, 42811213 - 42811157
Alignment:
| Q |
375 |
aagctccgaatgcatgtatgatgatagccctttatcaatttcatccacatctggatc |
431 |
Q |
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||||||||||| |||| ||||||||||| |||||||| ||||| ||||||||||| |
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| T |
42811213 |
aagctccgaatacatgaatgatgatagcattttatcaacttcatgtacatctggatc |
42811157 |
T |
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