View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11615_high_11 (Length: 230)
Name: NF11615_high_11
Description: NF11615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11615_high_11 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 9 - 230
Target Start/End: Original strand, 42068997 - 42069223
Alignment:
| Q |
9 |
gagatgaactcttacaagctgccttttgtggttgaggcgctgctggatggaaaacgcttaaagctttaacaaactctccaaaatctatcataccatcatt |
108 |
Q |
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| T |
42068997 |
gagatgaactcttacaagctgccttttgtggttgaggcgctgctggatggaaaacgcttaaagctttaacaaactctccaaaatctatcataccatcatt |
42069096 |
T |
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| Q |
109 |
ttttgagtcaaatatattgaacacctgcttacaaatctagtcaaagcagtgtatggtatatactctgc-----taatataatataatatagtgatgtaca |
203 |
Q |
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| T |
42069097 |
ttttgagtcaaatatattgaacacctgcttacaaatctagtcaaagcagtgtatggtatatactctgctaatataatataatataatatagtgatgtaca |
42069196 |
T |
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| Q |
204 |
caaatcaataatatactatgctgaccc |
230 |
Q |
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||||||||||||||||||||||||||| |
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| T |
42069197 |
caaatcaataatatactatgctgaccc |
42069223 |
T |
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