View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11615_high_4 (Length: 357)
Name: NF11615_high_4
Description: NF11615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11615_high_4 |
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Alignment Details
Target: chr7 (Bit Score: 331; Significance: 0; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 331; E-Value: 0
Query Start/End: Original strand, 1 - 339
Target Start/End: Complemental strand, 31102040 - 31101702
Alignment:
| Q |
1 |
ttatgaaatgcacttaagtattttaatgagcccccggtgcacatttgagacggcaaatggccaacaaaatcattttcggacacaacaaaggaataccaat |
100 |
Q |
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| T |
31102040 |
ttatgaaatgcacttaagtattttaatgagcccccggtgcacatttgagacggcaaatggccaacaaaatcattttcggacacaacaaaggaataccaat |
31101941 |
T |
|
| Q |
101 |
tggtaatgttataaagtccatttggaattctaccataaagtttgttggaagctacttcaaagacaatgagctgcttcaaatttccgagtgtagctggaat |
200 |
Q |
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| T |
31101940 |
tggtaatgttataaagtccatttggaattctaccataaagtttgttggaagctacttcaaagacaatgagctgcttcaaatttccgattgtagctggaat |
31101841 |
T |
|
| Q |
201 |
agttcctgtgagattgttcacttggacactaaagtatttcaaattgatcaaatttcctatagaggcaggaattgatccagaaagtcgattatttcgcaaa |
300 |
Q |
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| T |
31101840 |
agttcctgtgagattgtttacttggacactaaagtatttcaaattgatcaaatttcctatagaggcaggaattgatccagaaagtcgattatttcgcaaa |
31101741 |
T |
|
| Q |
301 |
agcaataaagtgaggtttttcaagtttccaattgtggaa |
339 |
Q |
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| T |
31101740 |
agcaataaagtgaggtttttcaagtttccaattgtggaa |
31101702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 169; E-Value: 1e-90
Query Start/End: Original strand, 43 - 339
Target Start/End: Complemental strand, 31139375 - 31139079
Alignment:
| Q |
43 |
atttgagacggcaaatggccaacaaaatcattttcggacacaacaaaggaataccaattggtaatgttataaagtccatttggaattctaccataaagtt |
142 |
Q |
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|||||||||||||||||||||||||||||||||| |||||||| ||||||| |||||||||| ||||||||||||||||||||||||||||||| ||||| |
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| T |
31139375 |
atttgagacggcaaatggccaacaaaatcatttttggacacaataaaggaaaaccaattggttatgttataaagtccatttggaattctaccatgaagtt |
31139276 |
T |
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| Q |
143 |
tgttggaagctacttcaaagacaatgagctgcttcaaatttccgagtgtagctggaatagttcctgtgagattgttcacttggacactaaagtatttcaa |
242 |
Q |
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| |||| |||||||||||||||| ||||| | ||||||||||| | ||||| |||||||||||||||||||||||| |||||||||||||| | | ||| |
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| T |
31139275 |
tattggcagctacttcaaagacagtgagccgattcaaatttccaattgtagttggaatagttcctgtgagattgttttcttggacactaaaggaatccaa |
31139176 |
T |
|
| Q |
243 |
attgatcaaatttcctatagaggcaggaattgatccagaaagtcgattatttcgcaaaagcaataaagtgaggtttttcaagtttccaattgtggaa |
339 |
Q |
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| T |
31139175 |
attgatcaaatttcctatagtggcaggaattgatcctgacagacgattcattcctaaaaacaaatattggaggtttttcaagtttccaattgtggaa |
31139079 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 146; E-Value: 7e-77
Query Start/End: Original strand, 43 - 284
Target Start/End: Complemental strand, 31057563 - 31057322
Alignment:
| Q |
43 |
atttgagacggcaaatggccaacaaaatcattttcggacacaacaaaggaataccaattggtaatgttataaagtccatttggaattctaccataaagtt |
142 |
Q |
| |
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||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||||||||||||||||||| ||||| |
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| T |
31057563 |
atttgagacggcaaatgtccaacaaaatcattttcggacacaacaaaggaaatccaattggttatgttataaagaccatttggaattctaccatgaagtt |
31057464 |
T |
|
| Q |
143 |
tgttggaagctacttcaaagacaatgagctgcttcaaatttccgagtgtagctggaatagttcctgtgagattgttcacttggacactaaagtatttcaa |
242 |
Q |
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| |||| |||||||||||| ||| ||||| |||||||||||| | || ||||||||||||||| ||||||||||| |||||||||| | | || ||| |
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| T |
31057463 |
tattggtagctacttcaaaaacagtgagccacttcaaatttccaattgaagctggaatagttccagtgagattgttttcttggacactgaggacttgcaa |
31057364 |
T |
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| Q |
243 |
attgatcaaatttcctatagaggcaggaattgatccagaaag |
284 |
Q |
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| T |
31057363 |
attgatcaaatttcctatagaggcaggaattggtccagaaag |
31057322 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 43 - 283
Target Start/End: Complemental strand, 31183090 - 31182850
Alignment:
| Q |
43 |
atttgagacggcaaatggccaacaaaatcattttcggacacaacaaaggaataccaattggtaatgttataaagtccatttggaattctaccataaagtt |
142 |
Q |
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|||||||||||||||||||||||||||||||| || ||||||| |||||||||||||||||| |||||| ||| |||||||||||||||||| ||||| |
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| T |
31183090 |
atttgagacggcaaatggccaacaaaatcattctcagacacaagaaaggaataccaattggtgttgttattgagttcatttggaattctaccatgaagtt |
31182991 |
T |
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| Q |
143 |
tgttggaagctacttcaaagacaatgagctgcttcaaatttccgagtgtagctggaatagttcctgtgagattgttcacttggacactaaagtatttcaa |
242 |
Q |
| |
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| || || || |||||||||| ||||| ||||||||||||| | |||||||||||| ||||| ||||||||||| |||||| ||||| | | ||| |
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| T |
31182990 |
tatttttagttaattcaaagacactgagcagcttcaaatttccaattgtagctggaattgttccagtgagattgttttcttggagactaaggattaccaa |
31182891 |
T |
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| Q |
243 |
attgatcaaatttcctatagaggcaggaattgatccagaaa |
283 |
Q |
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| T |
31182890 |
attgatcaaatttcctatagaggcaggaattgatccagaaa |
31182850 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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