View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11615_low_1 (Length: 846)
Name: NF11615_low_1
Description: NF11615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11615_low_1 |
 | |
|
Alignment Details
Target: chr6 (Bit Score: 717; Significance: 0; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 717; E-Value: 0
Query Start/End: Original strand, 15 - 827
Target Start/End: Original strand, 6169774 - 6170582
Alignment:
| Q |
15 |
cataggaaacattacaaaatttggaaggtttattggaacaatgggatgaagttgctgctgctattattatttacaaacataggattttctgcaatgtcaa |
114 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6169774 |
catagaaaacattacaaaatttggaaggtttattggaacaatgggatgaagttgctgctgctattattatttacaaacataggattttctgcaatgtcaa |
6169873 |
T |
|
| Q |
115 |
tagcctcatttgtcccgttggtgttttcaaatcgaccaacgtaacgtgtacactttcatccattcgtcgacaacttttgttccaaaaaaggatgagggtt |
214 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6169874 |
tagcttcatttgtcccgttggtgttttcaaatcgaccaatgtaacgtgtacactttcatgcattcgtcgacaacttttgttccaaaaaaggatgagggtt |
6169973 |
T |
|
| Q |
215 |
tctactactaatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataattcatttatcaatacttga |
314 |
Q |
| |
|
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6169974 |
tctacta---atctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataatccatttatcaatacttga |
6170070 |
T |
|
| Q |
315 |
tcaccaatattcnnnnnnncaacatcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaacttaatcattttgaataacattgc |
414 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6170071 |
tcaccaatattcaaaaaaacaacatcaccaacaacaatctcaaagatcgatatcttttggcagttaccacttcgaacttaatcattttga-taacattgc |
6170169 |
T |
|
| Q |
415 |
taattgaaacaatttatcaaattgtctgtgtttataattaatttggtagggagtatatttgaatagaaaataaaaacatgataggtgtttataatcaagg |
514 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6170170 |
taattgaaacaatttatcaaattgtctgtgtttataattaatttggtagggagtatatttgaatagaaaataaaaacatgataggtgtttataatcaagg |
6170269 |
T |
|
| Q |
515 |
acaaagggagtaattatcnnnnnnncttcatttgtaatgaaattgatcttaattgatttgtttcttcgaataggatcaaagattaaaattaatttatgag |
614 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6170270 |
acaaagggagtaattatctttttttcttcatttgtaatgaaattgatcttaattgatttgtttcttcgaataggatcaaagattaaaattaatttatgag |
6170369 |
T |
|
| Q |
615 |
atatagaattggttccaggatgacataaaattgattccattgataaaaaattgatgtggatattttttaatgtgttcctattttattagcttatgtttgt |
714 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
|
|
| T |
6170370 |
atatagaattggttccaggatgacataaaattgattccattgataaaaaattgatgtggatattttttaatgtgttcctattttattagcctatgtttgt |
6170469 |
T |
|
| Q |
715 |
attgttatttgatagtggatttgttgtgtcctacaatttgtagcttctctattatcaatttccaaagctatcaaacgtgtggtgaaacgccaaaacaaac |
814 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
6170470 |
attgttatttgatagtggatttgttgtgtcctacaatttgtagcttctctattatcaatttccaaagctatcaaacatgtggtgaaacgccaaaacaaac |
6170569 |
T |
|
| Q |
815 |
acaaacttagtta |
827 |
Q |
| |
|
||||||||||||| |
|
|
| T |
6170570 |
acaaacttagtta |
6170582 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 225 - 439
Target Start/End: Original strand, 6186927 - 6187142
Alignment:
| Q |
225 |
atctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataattcatttatcaatacttgatcaccaatat |
324 |
Q |
| |
|
|||||||||||||||||| ||| ||||||||| |||||||||||||||| |||| |||||| | ||| ||| ||| | ||||||||||||||| | |
|
|
| T |
6186927 |
atctctacatgatcactctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcagccggtacttgatcaccaatct |
6187026 |
T |
|
| Q |
325 |
tcnnnnnnncaacatcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaacttaatcattttgaataacattgctaa-ttgaaa |
423 |
Q |
| |
|
|| ||||||||||||||||||| ||||| || |||| |||| | || |||||||||||| ||||| ||||||| ||||||||| |||| | |
|
|
| T |
6187027 |
tcaaacaaacaacatcaccaacaacaatatcaaatatagatacctttagccgacgaccacttcgaaccaaatcaatttgaatgtcattgctaacttgaga |
6187126 |
T |
|
| Q |
424 |
caatttatcaaattgt |
439 |
Q |
| |
|
|||||||||||||||| |
|
|
| T |
6187127 |
caatttatcaaattgt |
6187142 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 49; Significance: 1e-18; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 223 - 439
Target Start/End: Original strand, 4243869 - 4244086
Alignment:
| Q |
223 |
taatctctacatgatcactcgcactggtcatgcttcattcatcaactctcaaggaatttccatcgatgaataattcatttatcaatacttgatcaccaat |
322 |
Q |
| |
|
|||||||||||||||| ||| ||| ||||||||| |||||||||||||||| |||| |||||| | ||| ||| ||| ||||||||||||||| |
|
|
| T |
4243869 |
taatctctacatgatcgctctcaccggtcatgctcgattcatcaactctcaacgaatgtccatctacgaacaatccatcggctggtacttgatcaccaat |
4243968 |
T |
|
| Q |
323 |
attcnnnnnnncaacatcaccaacaacaatctcaaagatcgatatcttttggcggttaccacttcgaacttaatcattttgaataacattgct-aattga |
421 |
Q |
| |
|
||| ||||||||||||||||||| || || || |||| |||||| ||| ||||| ||||| ||||| |||||||| ||||||| | |||| |
|
|
| T |
4243969 |
cttcaaacaaacaacatcaccaacaacaatatcgaatattgataccttttgtcggcgcccactacgaaccaaatcaatttgaatatcattgctcacttga |
4244068 |
T |
|
| Q |
422 |
aacaatttatcaaattgt |
439 |
Q |
| |
|
||||||||||||||||| |
|
|
| T |
4244069 |
gacaatttatcaaattgt |
4244086 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 37; Significance: 0.00000000002; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 746 - 790
Target Start/End: Original strand, 47336509 - 47336553
Alignment:
| Q |
746 |
tacaatttgtagcttctctattatcaatttccaaagctatcaaac |
790 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||| |||||| |
|
|
| T |
47336509 |
tacaatttgtagcttctctattatcaatttccaaggctctcaaac |
47336553 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University