View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11615_low_2 (Length: 519)
Name: NF11615_low_2
Description: NF11615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11615_low_2 |
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Alignment Details
Target: chr8 (Bit Score: 425; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 425; E-Value: 0
Query Start/End: Original strand, 16 - 509
Target Start/End: Original strand, 27079377 - 27079870
Alignment:
| Q |
16 |
cagttacatcacggcccaaaactgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatgctcggtgccctctcaca |
115 |
Q |
| |
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||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
27079377 |
cagttacatcatggcccaaaactgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatactcggtgccctctcaca |
27079476 |
T |
|
| Q |
116 |
ctcacctaacgagtccactatcatcttatccattgaggaattctcagacaccttaaagacttgcttcaactcattcaacttagaagatgcaaagggtaat |
215 |
Q |
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|||||| || ||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
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| T |
27079477 |
ctcacccaatgagtccactatcatcttatccatcgaggaattctcagacaccttaaaaacttgcttcaactcattcaacttagaagatgcaaagggtaat |
27079576 |
T |
|
| Q |
216 |
ttggtcaaaatggtacgtggtaaaaacgatctttgtggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttcccgga |
315 |
Q |
| |
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||||||||||||||||||||||||||||| ||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
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| T |
27079577 |
ttggtcaaaatggtacgtggtaaaaacgaccttggcggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttctcgga |
27079676 |
T |
|
| Q |
316 |
aaaacttaccaggttgaacccannnnnnngccaaactaacactttcactaacagaatttgttgaagaagaagatttcttagtataaccggcaaaagaaat |
415 |
Q |
| |
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|||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
27079677 |
aaaacttaccaggttgaacccatttttttgccaaactaacactttcactaacagaatttgttgaagaagaagatttcttagtataaccagcaaaagaaat |
27079776 |
T |
|
| Q |
416 |
accttttttatcgtaatccttaaacgtgttattaacaccataacctttgaatgttaccttatgatccgcatcagcacctttagcataccctttg |
509 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
27079777 |
accttttttatcgtaatccttaaacgtgttattaacaccataacctttgaatgttatcttatgatccgcatcagcacctttagcataccctttg |
27079870 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 30 - 509
Target Start/End: Original strand, 27065674 - 27066153
Alignment:
| Q |
30 |
cccaaaactgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatgctcggtgccctctcacactcacctaacgagt |
129 |
Q |
| |
|
|||||||| ||||||||||| ||||||||||||||||| ||||| ||||||||||| || ||||| | ||||| |||||||| ||||||| |||| | |
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|
| T |
27065674 |
cccaaaacagaagttgcaaaatcaatcatatcctcaagagaacccacacaacgcttcgtttcacctacactcggcgccctctcgcactcactcaacgcat |
27065773 |
T |
|
| Q |
130 |
ccactatcatcttatccattgaggaattctcagacaccttaaagacttgcttcaactcattcaacttagaagatgcaaagggtaatttggtcaaaatggt |
229 |
Q |
| |
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|||| |||||||||| ||| || |||||||| |||||||| || |||||||||| |||||||||||||||||||||||| || |||||||||||||||| |
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| T |
27065774 |
ccaccatcatcttattcatcgaagaattctcggacaccttgaaaacttgcttcatctcattcaacttagaagatgcaaatggcaatttggtcaaaatgga |
27065873 |
T |
|
| Q |
230 |
acgtggtaaaaacgatctttgtggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttcccggaaaaacttaccaggt |
329 |
Q |
| |
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||| || |||||||| ||| | |||||||||||| | ||||| |||||||||||||| ||||| ||||||||||| ||||||||||||||||||||| |
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| T |
27065874 |
acgaggcaaaaacgaccttggcggtaatttatcccttatatctggcataggcataactgtcccttccttcaacatcttctcccggaaaaacttaccaggt |
27065973 |
T |
|
| Q |
330 |
tgaacccannnnnnngccaaactaacactttcactaacagaatttgttgaagaagaagatttcttagtataaccggcaaaagaaataccttttttatcgt |
429 |
Q |
| |
|
|||||| ||||||||| |||| ||||| | ||| || ||||||| || || | ||| |||||| ||||||||||||||||| || || | |
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| T |
27065974 |
tgaaccatgttttttgccaaactaccactatcactgagagagttagttgaagtagtag---ttttattataactagcaaaagaaatacctttcttgtcat |
27066070 |
T |
|
| Q |
430 |
aatccttaaacgtgttattaacacca---taacctttgaatgttaccttatgatccgcatcagcacctttagcataccctttg |
509 |
Q |
| |
|
|||||||||| || |||||| ||| ||| |||| || | ||||||||||| |||||||||||||||||| |||||| |
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|
| T |
27066071 |
aatccttaaatgtattattattcccattgtaaactttaaacgaaaccttatgatctaaatcagcacctttagcatagcctttg |
27066153 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 30 - 335
Target Start/End: Original strand, 27053232 - 27053537
Alignment:
| Q |
30 |
cccaaaactgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacccatgctcggtgccctctcacactcacctaacgagt |
129 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||| ||||| ||||||||||| ||||||| | || || || || |||||||||| || |||| |
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|
| T |
27053232 |
cccaaaatagaagttgcaaagtcaatcatgtcctcaagcgaacctacacaacgcttgatctcacctttacttggcgctctttcacactcactcaatgagt |
27053331 |
T |
|
| Q |
130 |
ccactatcatcttatccattgaggaattctcagacaccttaaagacttgcttcaactcattcaacttagaagatgcaaagggtaatttggtcaaaatggt |
229 |
Q |
| |
|
||||||||||||| ||||| ||||||| ||||||||||| || |||||||||| | ||||||||||||||||||||||| |||||| ||||||||| |
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|
| T |
27053332 |
ccactatcatcttttccataaaggaattttcagacaccttgaaaacttgcttcatattgttcaacttagaagatgcaaagggcaatttgatcaaaatgga |
27053431 |
T |
|
| Q |
230 |
acgtggtaaaaacgatctttgtggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttcccggaaaaacttaccaggt |
329 |
Q |
| |
|
|||||| |||||||| || ||||||| |||||| | |||| |||||||||||||| ||||| ||||||||| |||| |||||||||||||| ||| |
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|
| T |
27053432 |
acgtggcaaaaacgacctaggtggtaacttatcccttgtatctggcataggcataacagtcccttccttcaacatcctttcgcggaaaaacttacctggt |
27053531 |
T |
|
| Q |
330 |
tgaacc |
335 |
Q |
| |
|
| |||| |
|
|
| T |
27053532 |
tcaacc |
27053537 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 33; Significance: 0.000000003; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 30 - 94
Target Start/End: Complemental strand, 14866364 - 14866300
Alignment:
| Q |
30 |
cccaaaactgaagttgcaaagtcaatcatatcctcaagtgaaccaacacaacgctttgtctcacc |
94 |
Q |
| |
|
|||||||| |||||||||||||| ||||||||||||| || |||||||| | ||||||||||| |
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|
| T |
14866364 |
cccaaaaccgaagttgcaaagtcgatcatatcctcaatagacccaacacatctttttgtctcacc |
14866300 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 234 - 337
Target Start/End: Complemental strand, 14866160 - 14866057
Alignment:
| Q |
234 |
ggtaaaaacgatctttgtggtaatttatccttaatatccggcataggcataaccaccccttgtttcaacatcttttcccggaaaaacttaccaggttgaa |
333 |
Q |
| |
|
||||||||||| |||| ||||||||||| ||||||| ||||||||||| ||| |||| ||||||||| || || | |||||||||||||| | || |
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| T |
14866160 |
ggtaaaaacgaccttttaggtaatttatctctaatatcaggcataggcattaccgtaccttctttcaacattttctctctaaaaaacttaccaggctcaa |
14866061 |
T |
|
| Q |
334 |
ccca |
337 |
Q |
| |
|
|||| |
|
|
| T |
14866060 |
ccca |
14866057 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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