View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11615_low_3 (Length: 361)

Name: NF11615_low_3
Description: NF11615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11615_low_3
NF11615_low_3
[»] chr2 (15 HSPs)
chr2 (1-306)||(38584005-38584314)
chr2 (167-306)||(8986137-8986279)
chr2 (78-258)||(1173468-1173648)
chr2 (152-306)||(1173572-1173726)
chr2 (152-234)||(32290558-32290644)
chr2 (82-172)||(1173379-1173468)
chr2 (299-341)||(32290489-32290531)
chr2 (49-99)||(38583979-38584029)
chr2 (299-341)||(38584321-38584363)
chr2 (1-38)||(32290735-32290772)
chr2 (79-139)||(1173283-1173343)
chr2 (158-202)||(20594014-20594058)
chr2 (55-94)||(8986512-8986551)
chr2 (1-38)||(8986493-8986531)
chr2 (1-99)||(38583970-38584068)
[»] chr8 (7 HSPs)
chr8 (184-336)||(20241856-20242011)
chr8 (184-336)||(20251056-20251211)
chr8 (78-139)||(20242177-20242238)
chr8 (184-234)||(20242053-20242103)
chr8 (184-234)||(20250964-20251014)
chr8 (5-38)||(20242317-20242350)
chr8 (5-38)||(20250810-20250843)
[»] chr7 (20 HSPs)
chr7 (184-336)||(44338179-44338334)
chr7 (167-327)||(46963824-46963986)
chr7 (77-195)||(21813824-21813942)
chr7 (95-211)||(11828572-11828688)
chr7 (167-254)||(11828582-11828670)
chr7 (132-238)||(11828578-11828684)
chr7 (154-226)||(21813824-21813896)
chr7 (167-234)||(15623111-15623177)
chr7 (167-238)||(21813843-21813914)
chr7 (167-234)||(15623204-15623270)
chr7 (78-139)||(15623084-15623145)
chr7 (78-139)||(44338500-44338561)
chr7 (167-231)||(24487089-24487152)
chr7 (104-203)||(24487088-24487190)
chr7 (184-234)||(44338376-44338426)
chr7 (197-258)||(24487088-24487149)
chr7 (5-38)||(44338640-44338673)
chr7 (56-201)||(46963777-46963919)
chr7 (123-163)||(6530607-6530647)
chr7 (151-203)||(15623126-15623177)
[»] chr5 (16 HSPs)
chr5 (184-341)||(24136699-24136855)
chr5 (79-200)||(9511777-9511898)
chr5 (147-231)||(9511777-9511861)
chr5 (167-306)||(9511737-9511872)
chr5 (17-200)||(11335310-11335490)
chr5 (167-234)||(24136888-24136955)
chr5 (167-234)||(24137043-24137109)
chr5 (50-139)||(24137075-24137163)
chr5 (158-195)||(27314677-27314714)
chr5 (194-258)||(11335393-11335456)
chr5 (167-306)||(11335397-11335529)
chr5 (78-141)||(24136981-24137043)
chr5 (132-231)||(11335393-11335490)
chr5 (198-238)||(24136915-24136955)
chr5 (132-203)||(24137043-24137113)
chr5 (267-305)||(11921194-11921232)
[»] chr1 (16 HSPs)
chr1 (168-301)||(19825091-19825223)
chr1 (167-306)||(2072373-2072511)
chr1 (51-139)||(15629903-15629990)
chr1 (167-306)||(2075903-2076041)
chr1 (167-226)||(15630048-15630107)
chr1 (149-211)||(19825103-19825165)
chr1 (106-200)||(19825091-19825184)
chr1 (78-164)||(15630022-15630107)
chr1 (194-238)||(15630044-15630088)
chr1 (1-36)||(9168208-9168243)
chr1 (194-232)||(15629952-15629990)
chr1 (158-210)||(370290-370342)
chr1 (98-138)||(2072366-2072406)
chr1 (98-138)||(2075896-2075936)
chr1 (1-38)||(15629821-15629860)
chr1 (51-99)||(15629834-15629882)
[»] chr4 (15 HSPs)
chr4 (167-306)||(16870575-16870717)
chr4 (72-306)||(54147576-54147809)
chr4 (158-231)||(42265426-42265498)
chr4 (189-239)||(24225501-24225551)
chr4 (302-341)||(16870356-16870395)
chr4 (1-94)||(16871043-16871133)
chr4 (70-137)||(54147869-54147935)
chr4 (1-99)||(16871109-16871209)
chr4 (250-306)||(16870404-16870459)
chr4 (56-139)||(16870777-16870859)
chr4 (1-38)||(16871024-16871062)
chr4 (133-231)||(42265396-42265492)
chr4 (189-238)||(42265449-42265498)
chr4 (158-222)||(24225487-24225551)
chr4 (194-226)||(54147873-54147905)
[»] chr6 (19 HSPs)
chr6 (184-305)||(21861978-21862098)
chr6 (158-238)||(13097895-13097975)
chr6 (4-97)||(22860840-22860932)
chr6 (78-139)||(21862270-21862332)
chr6 (1-38)||(22860753-22860790)
chr6 (55-99)||(22860766-22860810)
chr6 (50-98)||(22860946-22860994)
chr6 (79-139)||(28063529-28063589)
chr6 (167-234)||(21862238-21862304)
chr6 (1-38)||(9291110-9291148)
chr6 (194-232)||(21862270-21862308)
chr6 (167-221)||(28063646-28063699)
chr6 (173-234)||(21862141-21862201)
chr6 (1-38)||(22860967-22861004)
chr6 (51-99)||(9291122-9291170)
chr6 (211-258)||(13167366-13167414)
chr6 (135-203)||(28063554-28063621)
chr6 (78-137)||(28063621-28063678)
chr6 (152-232)||(28063699-28063777)
[»] chr3 (10 HSPs)
chr3 (81-226)||(50295531-50295677)
chr3 (149-306)||(50295486-50295639)
chr3 (78-200)||(46692044-46692169)
chr3 (184-233)||(42530734-42530783)
chr3 (49-110)||(42530794-42530853)
chr3 (1-38)||(50295888-50295925)
chr3 (167-238)||(46692071-46692141)
chr3 (151-216)||(2593601-2593666)
chr3 (153-202)||(42530734-42530783)
chr3 (194-226)||(46692067-46692099)
[»] scaffold0499 (1 HSPs)
scaffold0499 (163-238)||(7266-7341)


Alignment Details
Target: chr2 (Bit Score: 212; Significance: 1e-116; HSPs: 15)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 212; E-Value: 1e-116
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 38584005 - 38584314
Alignment:
Q  1 tcagaagaatcaaaagggggagaagtgcaatgcaatcactcnnnnnnntcaaaagggggagaagtgcgatgcaattagaagaatcaaaagggggagaaga 100  Q
    |||||||||||||||||||||||||||||||||||||||||       |||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  38584005 tcagaagaatcaaaagggggagaagtgcaatgcaatcactcagaaaaatcaaaagggggagaagtgcgatgcaattagaagaatcaaaagggggagaaaa 38584104  T
Q  101 aaccaaattgggagtacttaactcaccaagcaaccaaattgggaacatttaactcaccaaacaactaaattgtgagcacttaactcacca----aacaac 196  Q
    || ||||||| ||| | |||||||||||| ||||||||||| || || |||||||||||||| || ||||||||||||||| ||||||||    ||||||    
T  38584105 aatcaaattgtgagcatttaactcaccaaacaaccaaattgtgagcacttaactcaccaaactaccaaattgtgagcacttgactcaccaaccaaacaac 38584204  T
Q  197 caaattgttagcactcgactcaccaaacaagcaaattgtgagtgcttacccaccaaacaaacgtacaaaccaaattgtgagcactattttgactcaccca 296  Q
    |||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  38584205 caaaatgtgagcactcgactcaccaaacaagcaaattgtgagtgcttacccaccaaacaaacgaacaaaccaaattgtgagcactattttgactcaccca 38584304  T
Q  297 acaaccaaac 306  Q
    ||||||||||    
T  38584305 acaaccaaac 38584314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 8986279 - 8986137
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgctt-acccaccaaacaaac----gta 261  Q
    ||||||||||||| |  ||||||||||||||||| ||| || | ||||||||||||||||||||||| ||||| ||| |||||||||||||||    | |    
T  8986279 aaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccaccaaacaaacaaatgaa 8986181  T
Q  262 caaaccaaattgtgagcactattttgactcacccaacaaccaaac 306  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  8986180 caaaccaa-ttgtgagcactattttgactcacccaacaaccaaac 8986137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 62; E-Value: 1e-26
Query Start/End: Original strand, 78 - 258
Target Start/End: Original strand, 1173468 - 1173648
Alignment:
Q  78 gaagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaattgggaacatttaactcaccaaacaactaaattgtgagc 177  Q
    ||||||||||||||| ||||||||||||||||| ||| |||  ||||||||| |||||||| || || |  ||| ||||||||||||  ||  |||||||    
T  1173468 gaagaatcaaaagggcgagaagaaaccaaattgtgagcactagactcaccaaacaaccaaagtgtgagcgctta-ctcaccaaacaaacaacatgtgagc 1173566  T
Q  178 acttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgct-tacccaccaaacaaac 258  Q
    |||  |||||||||||||||||| | | || |||||||||||||||||| |||||| ||||  ||  |||||||||||||||    
T  1173567 actagactcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgacccaccaaacaaac 1173648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 152 - 306
Target Start/End: Original strand, 1173572 - 1173726
Alignment:
Q  152 actcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgctt-acccacc 250  Q
    |||||||||||||| ||| | |||| |||  ||||||||||||| |||||| | |||||||||| |||||||||| |||||| ||||  ||| |||||||    
T  1173572 actcaccaaacaaccaaaatatgagtactcgactcaccaaacaaacaaattatgagcactcgacccaccaaacaaacaaattatgagcacttgacccacc 1173671  T
Q  251 aaacaaacgtacaaaccaaattgtgagcactattttgactcacccaacaaccaaac 306  Q
    ||||||||  ||||||| |||| |||| ||||| |||||||||| |||||||||||    
T  1173672 aaacaaacaaacaaacc-aattttgagaactatcttgactcacctaacaaccaaac 1173726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 152 - 234
Target Start/End: Complemental strand, 32290644 - 32290558
Alignment:
Q  152 actcaccaaacaactaaattgtgagcacttaactcacc----aaacaaccaaattgttagcactcgactcaccaaacaagcaaattg 234  Q
    |||||||||||||| ||||||||||||||| || ||||    ||| ||||||||||| |||||| ||| |||||||||| |||||||    
T  32290644 actcaccaaacaaccaaattgtgagcacttgacccaccaaaaaaataaccaaattgtgagcacttgacccaccaaacaaacaaattg 32290558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 82 - 172
Target Start/End: Original strand, 1173379 - 1173468
Alignment:
Q  82 aatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaattgggaacatttaactcaccaaacaactaaattg 172  Q
    ||||||||||||||||||||||||||||| | | |||  ||||||||| ||||||||| | ||  |||  |||||||||||||| ||||||    
T  1173379 aatcaaaagggggagaagaaaccaaattgtgtgcactagactcaccaaacaaccaaat-gtgagaattagactcaccaaacaaccaaattg 1173468  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Complemental strand, 32290531 - 32290489
Alignment:
Q  299 aaccaaactaaaccgaacaaaactaaatcaagacaactcgaag 341  Q
    ||||||||||||||||||||||| |||||||||||||| ||||    
T  32290531 aaccaaactaaaccgaacaaaaccaaatcaagacaacttgaag 32290489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 99
Target Start/End: Original strand, 38583979 - 38584029
Alignment:
Q  49 tcaaaagggggagaagtgcgatgcaattagaagaatcaaaagggggagaag 99  Q
    ||||||||| ||||| ||| ||||||| |||||||||||||||||||||||    
T  38583979 tcaaaagggcgagaaatgcaatgcaatcagaagaatcaaaagggggagaag 38584029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 299 - 341
Target Start/End: Original strand, 38584321 - 38584363
Alignment:
Q  299 aaccaaactaaaccgaacaaaactaaatcaagacaactcgaag 341  Q
    ||||||||||||||||| |||||||||||||||||||| ||||    
T  38584321 aaccaaactaaaccgaataaaactaaatcaagacaacttgaag 38584363  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 32290772 - 32290735
Alignment:
Q  1 tcagaagaatcaaaagggggagaagtgcaatgcaatca 38  Q
    ||||||||| ||||||||||||||||||||||||||||    
T  32290772 tcagaagaaccaaaagggggagaagtgcaatgcaatca 32290735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 1173283 - 1173343
Alignment:
Q  79 aagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaat 139  Q
    |||||||||||||||||||||||||||||||| ||| |||  |||||| || ||| |||||    
T  1173283 aagaatcaaaagggggagaagaaaccaaattgtgagcactcgactcactaaacaatcaaat 1173343  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 202
Target Start/End: Original strand, 20594014 - 20594058
Alignment:
Q  158 caaacaactaaattgtgagcacttaactcaccaaacaaccaaatt 202  Q
    |||||||| ||||||||| ||||||||||| ||||||||||||||    
T  20594014 caaacaaccaaattgtgaacacttaactcatcaaacaaccaaatt 20594058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 55 - 94
Target Start/End: Complemental strand, 8986551 - 8986512
Alignment:
Q  55 gggggagaagtgcgatgcaattagaagaatcaaaaggggg 94  Q
    ||||||||||||| ||||||| ||||||||||||||||||    
T  8986551 gggggagaagtgcaatgcaatcagaagaatcaaaaggggg 8986512  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 8986531 - 8986493
Alignment:
Q  1 tcagaagaatcaaaaggggg-agaagtgcaatgcaatca 38  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  8986531 tcagaagaatcaaaaggggggagaagtgcaatgcaatca 8986493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 99
Target Start/End: Original strand, 38583970 - 38584068
Alignment:
Q  1 tcagaagaatcaaaagggggagaagtgcaatgcaatcactcnnnnnnntcaaaagggggagaagtgcgatgcaa----ttagaagaatcaaaagggggag 96  Q
    |||||||||||||||||| ||||| |||||||||||||          ||||||||||||||||||| ||||||    | |||| |||||||||||||||    
T  38583970 tcagaagaatcaaaagggcgagaaatgcaatgcaatca----gaagaatcaaaagggggagaagtgcaatgcaatcactcagaaaaatcaaaagggggag 38584065  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 96; Significance: 5e-47; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 184 - 336
Target Start/End: Complemental strand, 20242011 - 20241856
Alignment:
Q  184 ctcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgcttacccaccaaacaaacgtacaaaccaaattgtgagcactat 283  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| | |||||||||||||||    
T  20242011 ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgagtgctgacccaccaaacaaacgaacaaa-ctaattgtgagcactat 20241913  T
Q  284 tttgactcacccaacaaccaaac----taaaccgaacaaaactaaatcaagacaact 336  Q
    |||||||||||||||||||||||    | |||| |||||||||||||||||||||||    
T  20241912 tttgactcacccaacaaccaaacaaattgaaccaaacaaaactaaatcaagacaact 20241856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 184 - 336
Target Start/End: Original strand, 20251056 - 20251211
Alignment:
Q  184 ctcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgcttacccaccaaacaaacgtacaaaccaaattgtgagcactat 283  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| | |||||||||||||||    
T  20251056 ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgagtgctgacccaccaaacaaacgaacaaa-ctaattgtgagcactat 20251154  T
Q  284 tttgactcacccaacaaccaaac----taaaccgaacaaaactaaatcaagacaact 336  Q
    |||||||||||||||||||||||    | |||| |||||||||||||||||||||||    
T  20251155 tttgactcacccaacaaccaaacaaattgaaccaaacaaaactaaatcaagacaact 20251211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 20242238 - 20242177
Alignment:
Q  78 gaagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaat 139  Q
    ||||||||||||||||||||||||||||||||| ||| ||   ||||||||  |||||||||    
T  20242238 gaagaatcaaaagggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaat 20242177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 20242103 - 20242053
Alignment:
Q  184 ctcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattg 234  Q
    ||||||||||||||||| ||| || |||||||||||||||| | |||||||    
T  20242103 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaattg 20242053  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Original strand, 20250964 - 20251014
Alignment:
Q  184 ctcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattg 234  Q
    ||||||||||||||||| ||| || |||||||||||||||| | |||||||    
T  20250964 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaattg 20251014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 20242350 - 20242317
Alignment:
Q  5 aagaatcaaaagggggagaagtgcaatgcaatca 38  Q
    |||||||||||||||||||||||||||| |||||    
T  20242350 aagaatcaaaagggggagaagtgcaatgaaatca 20242317  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Original strand, 20250810 - 20250843
Alignment:
Q  5 aagaatcaaaagggggagaagtgcaatgcaatca 38  Q
    |||||||||||||||||||||||||||| |||||    
T  20250810 aagaatcaaaagggggagaagtgcaatgaaatca 20250843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 96; Significance: 5e-47; HSPs: 20)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 96; E-Value: 5e-47
Query Start/End: Original strand, 184 - 336
Target Start/End: Complemental strand, 44338334 - 44338179
Alignment:
Q  184 ctcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgcttacccaccaaacaaacgtacaaaccaaattgtgagcactat 283  Q
    ||||||||||||||||| ||| || ||||||||||||||||||||||||| |||||||| |||||||||||||||| ||||| | |||||||||||||||    
T  44338334 ctcaccaaacaaccaaaatgtgagaactcgactcaccaaacaagcaaattatgagtgctgacccaccaaacaaacgaacaaa-ctaattgtgagcactat 44338236  T
Q  284 tttgactcacccaacaaccaaac----taaaccgaacaaaactaaatcaagacaact 336  Q
    |||||||||||||||||||||||    | |||| |||||||||||||||||||||||    
T  44338235 tttgactcacccaacaaccaaacaaattgaaccaaacaaaactaaatcaagacaact 44338179  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 69; E-Value: 7e-31
Query Start/End: Original strand, 167 - 327
Target Start/End: Original strand, 46963824 - 46963986
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgctt-acccaccaaacaaac----gta 261  Q
    ||||||||||||| |  ||||||||||||||||| ||| || | ||||||||||||||||||||||| ||||| ||| |||||||||||||||    | |    
T  46963824 aaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccaccaaacaaacaaatgaa 46963922  T
Q  262 caaaccaaattgtgagcactattttgactcacccaacaaccaaactaaaccgaacaaaactaaatc 327  Q
    |||||||| |||||||||||||||||||||||||||||||||||| |||  |||| ||||||||||    
T  46963923 caaaccaa-ttgtgagcactattttgactcacccaacaaccaaac-aaattgaaccaaactaaatc 46963986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 77 - 195
Target Start/End: Complemental strand, 21813942 - 21813824
Alignment:
Q  77 agaagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaattgggaacatttaactcaccaaacaactaaattgtgag 176  Q
    |||||||||||||||||||||| ||||||||||| | |||||||  ||||||||||||||||||| || || |  |||||||||||||| ||| ||||||    
T  21813942 agaagaatcaaaagggggagaaaaaaccaaattgtgggtacttatttcaccaagcaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgag 21813843  T
Q  177 cacttaactcaccaaacaa 195  Q
    ||||| |||||||||||||    
T  21813842 cacttgactcaccaaacaa 21813824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 95 - 211
Target Start/End: Original strand, 11828572 - 11828688
Alignment:
Q  95 agaagaaaccaaattgggagtacttaactcaccaagcaaccaaattgggaacatttaactcaccaaacaactaaattgtgagcacttaactcaccaaaca 194  Q
    |||||||||||||||| |||||||||||||||||| |||||||| || || ||    |||||||| ||||| ||||||||||||||| || ||||||||     
T  11828572 agaagaaaccaaattgtgagtacttaactcaccaaacaaccaaaatgtgagcacccgactcaccagacaaccaaattgtgagcacttgacccaccaaact 11828671  T
Q  195 accaaattgttagcact 211  Q
    | |||||||| ||||||    
T  11828672 aacaaattgtgagcact 11828688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 254
Target Start/End: Original strand, 11828582 - 11828670
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgctt-acccaccaaac 254  Q
    |||||||||| ||||||||||||||||||||||| ||| ||||| |||||||||| |||| |||||||||||  ||| |||||||||||    
T  11828582 aaattgtgagtacttaactcaccaaacaaccaaaatgtgagcacccgactcaccagacaaccaaattgtgagcacttgacccaccaaac 11828670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 132 - 238
Target Start/End: Original strand, 11828578 - 11828684
Alignment:
Q  132 aaccaaattgggaacatttaactcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaa 231  Q
    |||||||||| ||  | ||||||||||||||||| ||| |||||||||   |||||||| ||||||||||||| |||||| ||| |||||||| | ||||    
T  11828578 aaccaaattgtgagtacttaactcaccaaacaaccaaaatgtgagcacccgactcaccagacaaccaaattgtgagcacttgacccaccaaactaacaaa 11828677  T
Q  232 ttgtgag 238  Q
    |||||||    
T  11828678 ttgtgag 11828684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 154 - 226
Target Start/End: Complemental strand, 21813896 - 21813824
Alignment:
Q  154 tcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaa 226  Q
    ||||||| |||| ||||||||||||||  |||||||||||||||||| ||| |||||| ||||||||||||||    
T  21813896 tcaccaagcaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcacttgactcaccaaacaa 21813824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 15623111 - 15623177
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattg 234  Q
    |||||||||||||| ||||||||||||||||||| ||| || ||| |||||||||||||| |||||||    
T  15623111 aaattgtgagcactcaactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaaccaaattg 15623177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 238
Target Start/End: Complemental strand, 21813914 - 21813843
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgag 238  Q
    |||||||| | |||||  ||||||| |||||||||||| ||||||||||||||||||||| |||| ||||||    
T  21813914 aaattgtgggtacttatttcaccaagcaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgag 21813843  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 167 - 234
Target Start/End: Original strand, 15623204 - 15623270
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattg 234  Q
    |||||||||||||| |||||||||||||| |||| ||| || ||| |||||||||||||| |||||||    
T  15623204 aaattgtgagcactcaactcaccaaacaatcaaa-tgtgagaactagactcaccaaacaaccaaattg 15623270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 139
Target Start/End: Original strand, 15623084 - 15623145
Alignment:
Q  78 gaagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaat 139  Q
    |||||||||  ||||||||||||||| |||||| ||| ||| |||||||||| |||||||||    
T  15623084 gaagaatcagtagggggagaagaaacaaaattgtgagcactcaactcaccaaacaaccaaat 15623145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 44338561 - 44338500
Alignment:
Q  78 gaagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaat 139  Q
    ||||||||||||||||||||||||||||||||| ||| ||   ||||||||  |||||||||    
T  44338561 gaagaatcaaaagggggagaagaaaccaaattgtgagcacactactcaccagacaaccaaat 44338500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 167 - 231
Target Start/End: Original strand, 24487089 - 24487152
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaa 231  Q
    |||||||||| |||| |||||||||||||||||||||| | ||||  ||||||||||||| ||||    
T  24487089 aaattgtgagaacttgactcaccaaacaaccaaattgtgaacact-tactcaccaaacaaacaaa 24487152  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 104 - 203
Target Start/End: Original strand, 24487088 - 24487190
Alignment:
Q  104 caaattgggagtacttaactcaccaagcaaccaaattgggaacatttaactcac----caaacaactaaattgtgagcacttaactcaccaaacaaccaa 199  Q
    ||||||| ||| |||| ||||||||| ||||||||||| ||||| || ||||||    |||||||  ||||||||| ||||| |||||| |||||| |||    
T  24487088 caaattgtgagaacttgactcaccaaacaaccaaattgtgaacactt-actcaccaaacaaacaaacaaattgtgaacactttactcactaaacaatcaa 24487186  T
Q  200 attg 203  Q
    ||||    
T  24487187 attg 24487190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 184 - 234
Target Start/End: Complemental strand, 44338426 - 44338376
Alignment:
Q  184 ctcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattg 234  Q
    ||||||||||||||||| ||| || |||||||||||||||| | |||||||    
T  44338426 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaaccaccaaattg 44338376  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 197 - 258
Target Start/End: Original strand, 24487088 - 24487149
Alignment:
Q  197 caaattgttagcactcgactcaccaaacaagcaaattgtgagtgcttacccaccaaacaaac 258  Q
    |||||||| || ||| |||||||||||||| ||||||||||   ||||| ||||||||||||    
T  24487088 caaattgtgagaacttgactcaccaaacaaccaaattgtgaacacttactcaccaaacaaac 24487149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 5 - 38
Target Start/End: Complemental strand, 44338673 - 44338640
Alignment:
Q  5 aagaatcaaaagggggagaagtgcaatgcaatca 38  Q
    |||||||||||||||||||||||||||| |||||    
T  44338673 aagaatcaaaagggggagaagtgcaatgaaatca 44338640  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 56 - 201
Target Start/End: Original strand, 46963777 - 46963919
Alignment:
Q  56 ggggagaagtgcgatgcaattagaagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaattgggaacatttaactc 155  Q
    |||||||||||| || |||| |||||||| |||||||| |||||||||||||||| ||| || |  |||||||| |||||||| || ||  | |  ||||    
T  46963777 ggggagaagtgcaat-caatgagaagaataaaaagggg-agaagaaaccaaattgtgagcacat-gctcaccaaacaaccaaagtgtgagaaatcgactc 46963873  T
Q  156 accaaacaactaaattgtgagcacttaactcaccaaacaaccaaat 201  Q
    |||||||||  ||||| ||||  ||| || |||||||||| |||||    
T  46963874 accaaacaagcaaattatgagttcttgacccaccaaacaaacaaat 46963919  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 123 - 163
Target Start/End: Complemental strand, 6530647 - 6530607
Alignment:
Q  123 tcaccaagcaaccaaattgggaacatttaactcaccaaaca 163  Q
    ||||||| ||||||||||| |||||||| ||||||||||||    
T  6530647 tcaccaaacaaccaaattgtgaacatttgactcaccaaaca 6530607  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 151 - 203
Target Start/End: Original strand, 15623126 - 15623177
Alignment:
Q  151 aactcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaattg 203  Q
    ||||||||||||||| ||| |||||| |||  |||||||||||||||||||||    
T  15623126 aactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaaccaaattg 15623177  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 79; Significance: 7e-37; HSPs: 16)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 79; E-Value: 7e-37
Query Start/End: Original strand, 184 - 341
Target Start/End: Complemental strand, 24136855 - 24136699
Alignment:
Q  184 ctcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgctt-acccaccaaacaaacgtacaaaccaaattgtgagcacta 282  Q
    ||||||||||||||| | ||| || |||||||||||| |||||||||||| ||||||||| ||  |||||||||||| ||||||||| ||||||||||||    
T  24136855 ctcaccaaacaaccataatgtgagaactcgactcacccaacaagcaaattatgagtgctttacataccaaacaaacgaacaaaccaa-ttgtgagcacta 24136757  T
Q  283 ttttgactcacccaacaaccaaactaaaccgaacaaaactaaatcaagacaactcgaag 341  Q
    |||||||||||||||||||||||| |||  |||| |||| |||||||||||||| ||||    
T  24136756 ttttgactcacccaacaaccaaac-aaattgaaccaaaccaaatcaagacaacttgaag 24136699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 58; E-Value: 2e-24
Query Start/End: Original strand, 79 - 200
Target Start/End: Complemental strand, 9511898 - 9511777
Alignment:
Q  79 aagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaattgggaacatttaactcaccaaacaactaaattgtgagca 178  Q
    ||||||||||||||||| |||||| ||||||| ||||| |||||||||||| ||||||||||| || || |  ||||||||||||||  || ||||||||    
T  9511898 aagaatcaaaagggggataagaaatcaaattgtgagtatttaactcaccaaacaaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagca 9511799  T
Q  179 cttaactcaccaaacaaccaaa 200  Q
    ||  ||||||||||||| ||||    
T  9511798 ctcgactcaccaaacaaacaaa 9511777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 147 - 231
Target Start/End: Complemental strand, 9511861 - 9511777
Alignment:
Q  147 atttaactcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaa 231  Q
    ||||||||||||||||||| ||||||||||||||  ||||||||||||||| || ||| ||||||||||||||||||||| ||||    
T  9511861 atttaactcaccaaacaaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaaacaaacaaa 9511777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 9511872 - 9511737
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgct-tacccaccaaacaaacgtacaaa 265  Q
    |||||||||| | ||||||||||||||||||||||||| ||||||||||||||||||||| | || ||||||  ||  || ||||||||||||     ||    
T  9511872 aaattgtgagtatttaactcaccaaacaaccaaattgtgagcactcgactcaccaaacaaccgaagtgtgagcactcgactcaccaaacaaac-----aa 9511778  T
Q  266 ccaaattgtgagcactattttgactcacccaacaaccaaac 306  Q
     | ||||||||| ||||| || ||||||| |||||||||||    
T  9511777 acgaattgtgaggactatcttaactcacctaacaaccaaac 9511737  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 17 - 200
Target Start/End: Original strand, 11335310 - 11335490
Alignment:
Q  17 ggggagaagtgcaatgcaatcactcnnnnnnntcaaaagggggagaagtgcgatgcaattagaagaatcaaaagggggagaagaaaccaaattgggagta 116  Q
    |||||||||||||||||||||| ||       |||| |||||||||||||  || |||| | |||||||||||||||||||||||||||||||| ||| |    
T  11335310 ggggagaagtgcaatgcaatcaatcagaagaatcaatagggggagaagtgtaat-caatcaaaagaatcaaaagggggagaagaaaccaaattgtgagca 11335408  T
Q  117 cttaactcaccaagcaaccaaattgggaacatttaactcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaa 200  Q
     |  ||||||||| |||||||| || ||  | ||  | ||||||||||  ||||||||||||||| || | |||||||| ||||    
T  11335409 ttcgactcaccaaacaaccaaagtgtgagtactt--cccaccaaacaaacaaattgtgagcacttgacccgccaaacaaacaaa 11335490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 24136955 - 24136888
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattg 234  Q
    ||||||||||||||  |||||||||||||||||||||| || | ||| |||||||||||| |||||||    
T  24136955 aaattgtgagcactcgactcaccaaacaaccaaattgtgagaagtcggctcaccaaacaaccaaattg 24136888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 24137109 - 24137043
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattg 234  Q
    |||||||||||||| ||||||||||||||||||| ||| || ||| |||||||||||||| |||||||    
T  24137109 aaattgtgagcactcaactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaaccaaattg 24137043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 50 - 139
Target Start/End: Complemental strand, 24137163 - 24137075
Alignment:
Q  50 caaaagggggagaagtgcgatgcaattagaagaatcaaaaggggg-agaagaaaccaaattgggagtacttaactcaccaagcaaccaaat 139  Q
    |||||||||||||||||| || | |||||||||| |||||||||| |||| ||||||||||| ||| ||| |||||||||| |||||||||    
T  24137163 caaaagggggagaagtgcaat-ctattagaagaaccaaaaggggggagaa-aaaccaaattgtgagcactcaactcaccaaacaaccaaat 24137075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 158 - 195
Target Start/End: Complemental strand, 27314714 - 27314677
Alignment:
Q  158 caaacaactaaattgtgagcacttaactcaccaaacaa 195  Q
    ||||||||||||||||||||||||||||||||||||||    
T  27314714 caaacaactaaattgtgagcacttaactcaccaaacaa 27314677  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 194 - 258
Target Start/End: Original strand, 11335393 - 11335456
Alignment:
Q  194 aaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgcttacccaccaaacaaac 258  Q
    ||||||||||| |||| |||||||||||||||| |||| ||||||| ||| ||||||||||||||    
T  11335393 aaccaaattgtgagcattcgactcaccaaacaaccaaagtgtgagtactt-cccaccaaacaaac 11335456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 11335397 - 11335529
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgctt-acccaccaaacaaacgtacaaa 265  Q
    |||||||||||| |  |||||||||||||||||| ||| || |||   | |||||||||| |||||||||||  ||| |||| ||||||||||    |||    
T  11335397 aaattgtgagcattcgactcaccaaacaaccaaagtgtgagtactt--cccaccaaacaaacaaattgtgagcacttgacccgccaaacaaac----aaa 11335490  T
Q  266 ccaaattgtgagcactattttgactcacccaacaaccaaac 306  Q
    |||| ||||||||||||| |||||||| |||||||||||||    
T  11335491 ccaa-ttgtgagcactatcttgactca-ccaacaaccaaac 11335529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 24137043 - 24136981
Alignment:
Q  78 gaagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaattg 141  Q
    ||||||||||| ||||||||||||||||||||| ||| |||  ||||||||| |||||||||||    
T  24137043 gaagaatcaaa-gggggagaagaaaccaaattgtgagaactagactcaccaaacaaccaaattg 24136981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 132 - 231
Target Start/End: Original strand, 11335393 - 11335490
Alignment:
Q  132 aaccaaattgggaacatttaactcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaa 231  Q
    |||||||||| || ||||  |||||||||||||| ||| |||||| ||||  | |||||||||| |||||||| |||||| ||| | |||||||| ||||    
T  11335393 aaccaaattgtgagcattcgactcaccaaacaaccaaagtgtgagtactt--cccaccaaacaaacaaattgtgagcacttgacccgccaaacaaacaaa 11335490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 198 - 238
Target Start/End: Complemental strand, 24136955 - 24136915
Alignment:
Q  198 aaattgttagcactcgactcaccaaacaagcaaattgtgag 238  Q
    ||||||| ||||||||||||||||||||| |||||||||||    
T  24136955 aaattgtgagcactcgactcaccaaacaaccaaattgtgag 24136915  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 132 - 203
Target Start/End: Complemental strand, 24137113 - 24137043
Alignment:
Q  132 aaccaaattgggaacatttaactcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaattg 203  Q
    |||||||||| || || | ||||||||||||||| ||| |||||| |||  |||||||||||||||||||||    
T  24137113 aaccaaattgtgagcactcaactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaaccaaattg 24137043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 267 - 305
Target Start/End: Complemental strand, 11921232 - 11921194
Alignment:
Q  267 caaattgtgagcactattttgactcacccaacaaccaaa 305  Q
    ||||||||||| |||||||||||||||| ||||||||||    
T  11921232 caaattgtgagtactattttgactcaccaaacaaccaaa 11921194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 16)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 168 - 301
Target Start/End: Original strand, 19825091 - 19825223
Alignment:
Q  168 aattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgcttacccaccaaacaaacgtacaaacc 267  Q
    ||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||| |||||||||||  ||||| |||||| |||||  ||||| |    
T  19825091 aattgtgagcacttaactcaccaaacaaccaaattgtgagcactcgactcgccaaacaaccaaattgtgagcacttactcaccaaccaaacaaacaaa-c 19825189  T
Q  268 aaattgtgagcactattttgactcacccaacaac 301  Q
    |||||||||||| ||| |||||||||| ||||||    
T  19825190 aaattgtgagcattatcttgactcaccaaacaac 19825223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 2072373 - 2072511
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgcttacccaccaaacaaacgtacaaac 266  Q
    |||||||||| || |||||||||||||||||||| | | ||||||||||||| ||||||| |||||||||||   | ||||||| | |||||   |||||    
T  2072373 aaattgtgagtacataactcaccaaacaaccaaagtatgagcactcgactcatcaaacaatcaaattgtgagcaatcacccacccaccaaacaatcaaac 2072472  T
Q  267 caaattgtgagcactattttgactcacccaacaaccaaac 306  Q
    | ||| |||||| |||| ||||||||||||||||| ||||    
T  2072473 c-aatggtgagccctatcttgactcacccaacaactaaac 2072511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 51 - 139
Target Start/End: Original strand, 15629903 - 15629990
Alignment:
Q  51 aaaagggggagaagtgcgatgcaattagaagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaat 139  Q
    ||||||||||||||||| ||||||| |||||||||| || |||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  15629903 aaaagggggagaagtgcaatgcaatcagaagaatcataa-ggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaat 15629990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 306
Target Start/End: Original strand, 2075903 - 2076041
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgcttacccaccaaacaaacgtacaaac 266  Q
    |||||||||| || |||||||||||||||||||| | | ||||||||||||  ||||||| |||||||||||   | ||||||| | |||||    ||||    
T  2075903 aaattgtgagtacataactcaccaaacaaccaaagtatgagcactcgactcgtcaaacaaccaaattgtgagcaatcacccacccaccaaacaattaaac 2076002  T
Q  267 caaattgtgagcactattttgactcacccaacaaccaaac 306  Q
    | ||| |||||| |||| ||||||||||||||||| ||||    
T  2076003 c-aatggtgagccctatcttgactcacccaacaactaaac 2076041  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 44; E-Value: 6e-16
Query Start/End: Original strand, 167 - 226
Target Start/End: Original strand, 15630048 - 15630107
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaa 226  Q
    ||||||||||||||  |||||||||||||||||| ||| |||||||||||||||||||||    
T  15630048 aaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaa 15630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 149 - 211
Target Start/End: Original strand, 19825103 - 19825165
Alignment:
Q  149 ttaactcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaattgttagcact 211  Q
    ||||||||||||||||| ||||||||||||||  |||| ||||||||||||||||| ||||||    
T  19825103 ttaactcaccaaacaaccaaattgtgagcactcgactcgccaaacaaccaaattgtgagcact 19825165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 106 - 200
Target Start/End: Original strand, 19825091 - 19825184
Alignment:
Q  106 aattgggagtacttaactcaccaagcaaccaaattgggaacatttaactcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaa 200  Q
    ||||| ||| |||||||||||||| ||||||||||| || || |  |||| ||||||||| ||||||||||||||| ||||||||| ||| ||||    
T  19825091 aattgtgagcacttaactcaccaaacaaccaaattgtgagcactcgactcgccaaacaaccaaattgtgagcactt-actcaccaaccaaacaaa 19825184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 164
Target Start/End: Original strand, 15630022 - 15630107
Alignment:
Q  78 gaagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaattgggaacatttaactcaccaaacaa 164  Q
    |||||||||||||||| |||||||||||||||| ||| |||  ||||||||| |||||||| || || || |  |||||||||||||    
T  15630022 gaagaatcaaaagggg-agaagaaaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgagcactcgactcaccaaacaa 15630107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 194 - 238
Target Start/End: Original strand, 15630044 - 15630088
Alignment:
Q  194 aaccaaattgttagcactcgactcaccaaacaagcaaattgtgag 238  Q
    ||||||||||| ||||||||||||||||||||| |||| ||||||    
T  15630044 aaccaaattgtgagcactcgactcaccaaacaaccaaagtgtgag 15630088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 1 - 36
Target Start/End: Original strand, 9168208 - 9168243
Alignment:
Q  1 tcagaagaatcaaaagggggagaagtgcaatgcaat 36  Q
    ||||||||||||||||| ||||||||||||||||||    
T  9168208 tcagaagaatcaaaaggaggagaagtgcaatgcaat 9168243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 232
Target Start/End: Original strand, 15629952 - 15629990
Alignment:
Q  194 aaccaaattgttagcactcgactcaccaaacaagcaaat 232  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  15629952 aaccaaattgtgagcactcgactcaccaaacaaccaaat 15629990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 210
Target Start/End: Complemental strand, 370342 - 370290
Alignment:
Q  158 caaacaactaaattgtgagcacttaactcaccaaacaaccaaattgttagcac 210  Q
    |||||||| |||||| || ||||| ||||||||||| |||||||||| |||||    
T  370342 caaacaacaaaattgcgatcacttgactcaccaaactaccaaattgtaagcac 370290  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 2072366 - 2072406
Alignment:
Q  98 agaaaccaaattgggagtacttaactcaccaagcaaccaaa 138  Q
    ||||||||||||| |||||| ||||||||||| ||||||||    
T  2072366 agaaaccaaattgtgagtacataactcaccaaacaaccaaa 2072406  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 98 - 138
Target Start/End: Original strand, 2075896 - 2075936
Alignment:
Q  98 agaaaccaaattgggagtacttaactcaccaagcaaccaaa 138  Q
    ||||||||||||| |||||| ||||||||||| ||||||||    
T  2075896 agaaaccaaattgtgagtacataactcaccaaacaaccaaa 2075936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 15629821 - 15629860
Alignment:
Q  1 tcagaagaatcaaaa--gggggagaagtgcaatgcaatca 38  Q
    |||||||||||||||  |||||||||||||||||||||||    
T  15629821 tcagaagaatcaaaaaagggggagaagtgcaatgcaatca 15629860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 15629834 - 15629882
Alignment:
Q  51 aaaagggggagaagtgcgatgcaattagaagaatcaaaagggggagaag 99  Q
    ||||||||||||||||| ||||||| | |||||||||| | ||||||||    
T  15629834 aaaagggggagaagtgcaatgcaatcaaaagaatcaaaggagggagaag 15629882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 68; Significance: 3e-30; HSPs: 15)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 167 - 306
Target Start/End: Complemental strand, 16870717 - 16870575
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgctt-acccaccaaacaaac----gta 261  Q
    ||||||||||||| |  ||||||||||||||||| ||| || | ||||||||||||||||||||||| ||||| ||| |||||||||||||||    | |    
T  16870717 aaattgtgagcacatg-ctcaccaaacaaccaaagtgtgagaaatcgactcaccaaacaagcaaattatgagttcttgacccaccaaacaaacaaatgaa 16870619  T
Q  262 caaaccaaattgtgagcactattttgactcacccaacaaccaaac 306  Q
    |||||||| ||||||||||||||||||||||||||||||||||||    
T  16870618 caaaccaa-ttgtgagcactattttgactcacccaacaaccaaac 16870575  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 72 - 306
Target Start/End: Complemental strand, 54147809 - 54147576
Alignment:
Q  72 caattagaagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaattgggaacatttaactcaccaaacaactaaatt 171  Q
    |||| ||||||||||||||||||| |||||||||||||| ||| ||  |||||||||| |||||||| || ||  | |  |||||||||||||||||| |    
T  54147809 caatcagaagaatcaaaaggggga-aagaaaccaaattgtgagcaccaaactcaccaaacaaccaaaatgtgagaactagactcaccaaacaactaaagt 54147711  T
Q  172 gtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagca----aattgtgagtgctt-acccaccaaacaaacgtacaaac 266  Q
    |||||||| | ||||||||||||| |||||| | |||||| ||| |||||||||| ||    ||| |||||  ||| ||| |||||||||    ||||||    
T  54147710 gtgagcacctgactcaccaaacaaacaaattatgagcacttgacccaccaaacaaacaatccaatagtgagcacttgacctaccaaacaa----acaaac 54147615  T
Q  267 caaattgtgagcactattttgactcacccaacaaccaaac 306  Q
    | ||||||||| ||||| |||||||||| |||||||||||    
T  54147614 c-aattgtgaggactatcttgactcacctaacaaccaaac 54147576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 158 - 231
Target Start/End: Complemental strand, 42265498 - 42265426
Alignment:
Q  158 caaacaactaaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaa 231  Q
    ||||| || ||||||||||||||| | |||||||||||||||||||| || |||||||||||||||||| ||||    
T  42265498 caaaccaccaaattgtgagcacttgaatcaccaaacaaccaaattgtgag-actcgactcaccaaacaaccaaa 42265426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 189 - 239
Target Start/End: Complemental strand, 24225551 - 24225501
Alignment:
Q  189 caaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagt 239  Q
    |||||||||||||||| ||||||||| ||||||||||| ||||||||||||    
T  24225551 caaacaaccaaattgtaagcactcgattcaccaaacaaccaaattgtgagt 24225501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 302 - 341
Target Start/End: Complemental strand, 16870395 - 16870356
Alignment:
Q  302 caaactaaaccgaacaaaactaaatcaagacaactcgaag 341  Q
    ||||||||||||||||||||||||||||||||||| ||||    
T  16870395 caaactaaaccgaacaaaactaaatcaagacaacttgaag 16870356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 94
Target Start/End: Complemental strand, 16871133 - 16871043
Alignment:
Q  1 tcagaagaatcaaaagggggagaagtgcaatgcaatcactcnnnnnnntcaaaaggggg-agaagtgcgatgcaattagaagaatcaaaaggggg 94  Q
    ||||||||| |||||| |||||||||||||||||||||          ||||||||||| |||||||| ||||||| ||||||||||||||||||    
T  16871133 tcagaagaaccaaaagtgggagaagtgcaatgcaatca----gaagaatcaaaaggggggagaagtgcaatgcaatcagaagaatcaaaaggggg 16871043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 70 - 137
Target Start/End: Complemental strand, 54147935 - 54147869
Alignment:
Q  70 tgcaattagaagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaa 137  Q
    |||||| ||||||||||||||||| |||||||||||||||| ||| |||  ||||||||| |||||||    
T  54147935 tgcaatcagaagaatcaaaagggg-agaagaaaccaaattgtgagcactcgactcaccaaacaaccaa 54147869  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 99
Target Start/End: Complemental strand, 16871209 - 16871109
Alignment:
Q  1 tcagaagaatcaaaagggg-gagaagtgcaatgcaatcactcnnnnnnntc--aaaagggggagaagtgcgatgcaattagaagaatcaaaagggggaga 97  Q
    ||||||||||||||||||| ||||||||||||||||||| ||       ||  ||||||||||||||||| || |||| ||||||| |||||| ||||||    
T  16871209 tcagaagaatcaaaaggggagagaagtgcaatgcaatcaatcagacgaatcaaaaaagggggagaagtgcaat-caatcagaagaaccaaaagtgggaga 16871111  T
Q  98 ag 99  Q
    ||    
T  16871110 ag 16871109  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 250 - 306
Target Start/End: Complemental strand, 16870459 - 16870404
Alignment:
Q  250 caaacaaacgtacaaaccaaattgtgagcactattttgactcacccaacaaccaaac 306  Q
    |||||||||| ||||||| | | |||||||||||||||||||||| |||||||||||    
T  16870459 caaacaaacgaacaaacctact-gtgagcactattttgactcaccaaacaaccaaac 16870404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 56 - 139
Target Start/End: Complemental strand, 16870859 - 16870777
Alignment:
Q  56 ggggagaagtgcgatgcaattagaagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaat 139  Q
    |||||||||||| || |||| |||||||| |||| |||||||||||||||||||  ||| |||  |||||| || |||||||||    
T  16870859 ggggagaagtgcaat-caatgagaagaataaaaaaggggagaagaaaccaaattatgagcactcgactcacgaaacaaccaaat 16870777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 16871062 - 16871024
Alignment:
Q  1 tcagaagaatcaaaaggggg-agaagtgcaatgcaatca 38  Q
    |||||||||||||||||||| ||||||||||||||||||    
T  16871062 tcagaagaatcaaaaggggggagaagtgcaatgcaatca 16871024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 133 - 231
Target Start/End: Complemental strand, 42265492 - 42265396
Alignment:
Q  133 accaaattgggaacatttaactcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaa 231  Q
    ||||||||| || || || | |||||||||||| |||||||||| |||  ||||||||||||||||||  || |||||| || ||||||||||| ||||    
T  42265492 accaaattgtgagcacttgaatcaccaaacaaccaaattgtgag-actcgactcaccaaacaaccaaacagtgagcacttga-tcaccaaacaaccaaa 42265396  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 189 - 238
Target Start/End: Complemental strand, 42265498 - 42265449
Alignment:
Q  189 caaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgag 238  Q
    ||||| |||||||||| |||||| || ||||||||||| |||||||||||    
T  42265498 caaaccaccaaattgtgagcacttgaatcaccaaacaaccaaattgtgag 42265449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 222
Target Start/End: Complemental strand, 24225551 - 24225487
Alignment:
Q  158 caaacaactaaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaa 222  Q
    |||||||| ||||||| ||||||  | |||||||||||||||||||| || ||| || |||||||    
T  24225551 caaacaaccaaattgtaagcactcgattcaccaaacaaccaaattgtgagtacttgagtcaccaa 24225487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 226
Target Start/End: Complemental strand, 54147905 - 54147873
Alignment:
Q  194 aaccaaattgttagcactcgactcaccaaacaa 226  Q
    ||||||||||| |||||||||||||||||||||    
T  54147905 aaccaaattgtgagcactcgactcaccaaacaa 54147873  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 66; Significance: 4e-29; HSPs: 19)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 184 - 305
Target Start/End: Complemental strand, 21862098 - 21861978
Alignment:
Q  184 ctcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgcttacccaccaaacaaacgtacaaaccaaattgtgagcactat 283  Q
    |||| |||||||||||| ||| || | |||||||||||||||||||||||||||| |||| ||||||||||||||  ||||||| ||||||||| |||||    
T  21862098 ctcaacaaacaaccaaaatgtgagaattcgactcaccaaacaagcaaattgtgagcgctttcccaccaaacaaacaaacaaacc-aattgtgagaactat 21862000  T
Q  284 tttgactcacccaacaaccaaa 305  Q
    |||||||||| ||| |||||||    
T  21861999 tttgactcactcaaaaaccaaa 21861978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 238
Target Start/End: Complemental strand, 13097975 - 13097895
Alignment:
Q  158 caaacaactaaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgag 238  Q
    |||||||| |||||||||||||||  |||| ||||||| ||| |||| ||||||||||||| ||||||| ||| |||||||    
T  13097975 caaacaaccaaattgtgagcacttgtctcaacaaacaaacaatttgtgagcactcgactcatcaaacaaccaatttgtgag 13097895  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 4 - 97
Target Start/End: Complemental strand, 22860932 - 22860840
Alignment:
Q  4 gaagaatcaaaagggggagaagtgcaatgcaatcactcnnnnnnntcaaaagggggagaagtgcgatgcaattagaagaatcaaaagggggaga 97  Q
    |||||| ||||||||| |||||||||||||||||| ||       |||| |||||||||||||| ||| ||| ||||||||||||| |||||||    
T  22860932 gaagaaccaaaagggg-agaagtgcaatgcaatcaatcaaaagaatcaatagggggagaagtgcaatggaatcagaagaatcaaaaaggggaga 22860840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 78 - 139
Target Start/End: Complemental strand, 21862332 - 21862270
Alignment:
Q  78 gaagaatcaaaa-gggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaat 139  Q
    |||||||||||| ||||||||||||||||||||| ||| |||  ||||||||| |||||||||    
T  21862332 gaagaatcaaaatgggggagaagaaaccaaattgtgagcactcgactcaccaaacaaccaaat 21862270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22860790 - 22860753
Alignment:
Q  1 tcagaagaatcaaaagggggagaagtgcaatgcaatca 38  Q
    |||||||||||||||||| |||||||||||||||||||    
T  22860790 tcagaagaatcaaaagggagagaagtgcaatgcaatca 22860753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 55 - 99
Target Start/End: Complemental strand, 22860810 - 22860766
Alignment:
Q  55 gggggagaagtgcgatgcaattagaagaatcaaaagggggagaag 99  Q
    ||||||||||||| ||||||| |||||||||||||||| ||||||    
T  22860810 gggggagaagtgcaatgcaatcagaagaatcaaaagggagagaag 22860766  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 50 - 98
Target Start/End: Complemental strand, 22860994 - 22860946
Alignment:
Q  50 caaaagggggagaagtgcgatgcaattagaagaatcaaaagggggagaa 98  Q
    |||||||||||||| ||| ||||||| ||||||| ||||||||||||||    
T  22860994 caaaagggggagaaatgcaatgcaatcagaagaaccaaaagggggagaa 22860946  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 79 - 139
Target Start/End: Original strand, 28063529 - 28063589
Alignment:
Q  79 aagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaat 139  Q
    |||||||||||||||| ||||||| ||||||||||| | | |||| ||||| |||||||||    
T  28063529 aagaatcaaaagggggtgaagaaatcaaattgggagaattcaacttaccaaacaaccaaat 28063589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 234
Target Start/End: Complemental strand, 21862304 - 21862238
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattg 234  Q
    ||||||||||||||  |||||||||||||||||| ||| ||  || |||||||||||||| |||||||    
T  21862304 aaattgtgagcactcgactcaccaaacaaccaaa-tgtgagagctagactcaccaaacaaccaaattg 21862238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 38
Target Start/End: Original strand, 9291110 - 9291148
Alignment:
Q  1 tcagaagaatcaaaa-gggggagaagtgcaatgcaatca 38  Q
    ||||||||||||||| |||||||||||||||||||||||    
T  9291110 tcagaagaatcaaaaagggggagaagtgcaatgcaatca 9291148  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 194 - 232
Target Start/End: Complemental strand, 21862308 - 21862270
Alignment:
Q  194 aaccaaattgttagcactcgactcaccaaacaagcaaat 232  Q
    ||||||||||| ||||||||||||||||||||| |||||    
T  21862308 aaccaaattgtgagcactcgactcaccaaacaaccaaat 21862270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 167 - 221
Target Start/End: Original strand, 28063646 - 28063699
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcacca 221  Q
    ||||||||||||| | ||||||||||||||| |||||| |||||||| |||||||    
T  28063646 aaattgtgagcacctgactcaccaaacaacc-aattgtgagcactcggctcacca 28063699  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 173 - 234
Target Start/End: Complemental strand, 21862201 - 21862141
Alignment:
Q  173 tgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattg 234  Q
    ||||||||  |||||||||||||||||| ||| || ||| |||||||||||||| |||||||    
T  21862201 tgagcactcgactcaccaaacaaccaaa-tgtgagaactagactcaccaaacaaccaaattg 21862141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 22861004 - 22860967
Alignment:
Q  1 tcagaagaatcaaaagggggagaagtgcaatgcaatca 38  Q
    ||||||||| |||||||||||||| |||||||||||||    
T  22861004 tcagaagaaccaaaagggggagaaatgcaatgcaatca 22860967  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 51 - 99
Target Start/End: Original strand, 9291122 - 9291170
Alignment:
Q  51 aaaagggggagaagtgcgatgcaattagaagaatcaaaagggggagaag 99  Q
    ||||||||||||||||| ||||||| | |||||||||| | ||||||||    
T  9291122 aaaagggggagaagtgcaatgcaatcaaaagaatcaaaggagggagaag 9291170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 211 - 258
Target Start/End: Complemental strand, 13167414 - 13167366
Alignment:
Q  211 tcgactcaccaaacaagcaaattgtgagtgctt-acccaccaaacaaac 258  Q
    |||||||||||||||||||||||| |||  ||| |||||||||||||||    
T  13167414 tcgactcaccaaacaagcaaattgcgagcacttgacccaccaaacaaac 13167366  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 135 - 203
Target Start/End: Original strand, 28063554 - 28063621
Alignment:
Q  135 caaattgggaacatttaactcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaattg 203  Q
    ||||||||||  ||| |||| |||||||||| |||| ||||| |||  |||||||||||||||||||||    
T  28063554 caaattgggagaattcaacttaccaaacaaccaaat-gtgagaactagactcaccaaacaaccaaattg 28063621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 78 - 137
Target Start/End: Original strand, 28063621 - 28063678
Alignment:
Q  78 gaagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaa 137  Q
    |||||||||||||||  |||||||||||||||| ||| || | ||||||||| |||||||    
T  28063621 gaagaatcaaaaggg--agaagaaaccaaattgtgagcacctgactcaccaaacaaccaa 28063678  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 152 - 232
Target Start/End: Original strand, 28063699 - 28063777
Alignment:
Q  152 actcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaat 232  Q
    |||||||||||||   |||||||||||| | ||||| ||||||||| |||||| |||| |||||||| ||||||| |||||    
T  28063699 actcaccaaacaaactaattgtgagcac-tcactcatcaaacaacc-aattgtgagcaatcgactcaacaaacaaccaaat 28063777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 55; Significance: 2e-22; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 81 - 226
Target Start/End: Complemental strand, 50295677 - 50295531
Alignment:
Q  81 gaatcaaaaggggg-agaagaaaccaaattgggagtacttaactcaccaagcaaccaaattgggaacatttaactcaccaaacaactaaattgtgagcac 179  Q
    |||||||||||||| |||||||||||||||  |||||||||||||||||| ||| |||| |  ||  | | |||||||||||||||  || |||||||||    
T  50295677 gaatcaaaaggggggagaagaaaccaaattatgagtacttaactcaccaaacaatcaaagtacgagaactcaactcaccaaacaacccaagtgtgagcac 50295578  T
Q  180 ttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaa 226  Q
    |  |||||| ||||||||||||||| |||||| ||| ||| ||||||    
T  50295577 tcgactcacgaaacaaccaaattgtgagcacttgacccactaaacaa 50295531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 47; E-Value: 9e-18
Query Start/End: Original strand, 149 - 306
Target Start/End: Complemental strand, 50295639 - 50295486
Alignment:
Q  149 ttaactcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgagtgctt-accc 247  Q
    ||||||||||||||||  ||| |  ||| ||| |||||||||||||||| || ||| |||||||||||||| |||||| |||||||||||  ||| ||||    
T  50295639 ttaactcaccaaacaatcaaagtacgagaactcaactcaccaaacaacccaagtgtgagcactcgactcacgaaacaaccaaattgtgagcacttgaccc 50295540  T
Q  248 accaaacaaacgtacaaaccaaattgtgagcactattttgactcacccaacaaccaaac 306  Q
    || ||||||||     || ||||||||| ||||||| |  ||||| |||||||||||||    
T  50295539 actaaacaaac-----aatcaaattgtgtgcactatctcaactcatccaacaaccaaac 50295486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 78 - 200
Target Start/End: Original strand, 46692044 - 46692169
Alignment:
Q  78 gaagaatcaaaagggggagaagaaaccaaattgggagtacttaactcaccaagcaaccaaattgggaacatttaactcaccaaacaactaaattgtgagc 177  Q
    ||||||||||||||| ||||||||||||||||| ||| |||  ||||||||| |||| |||| | ||  |||  |||||||||||||| ||||||||||     
T  46692044 gaagaatcaaaagggagagaagaaaccaaattgtgagcactcgactcaccaaacaactaaat-gtgagaattagactcaccaaacaaccaaattgtgaga 46692142  T
Q  178 ac----ttaactcaccaaacaaccaaa 200  Q
    ||    |||||||||| ||||||||||    
T  46692143 actagattaactcacccaacaaccaaa 46692169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 184 - 233
Target Start/End: Complemental strand, 42530783 - 42530734
Alignment:
Q  184 ctcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaatt 233  Q
    ||||||||||||||||| ||| || |||||||||||||||||| ||||||    
T  42530783 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaaatt 42530734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 49 - 110
Target Start/End: Complemental strand, 42530853 - 42530794
Alignment:
Q  49 tcaaaagggggagaagtgcgatgcaattagaagaatcaaaagggggagaagaaaccaaattg 110  Q
    |||||||||| |||||||| || |||| ||||||||||||||||| ||||||||||||||||    
T  42530853 tcaaaaggggaagaagtgcaat-caatcagaagaatcaaaagggg-agaagaaaccaaattg 42530794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 38
Target Start/End: Complemental strand, 50295925 - 50295888
Alignment:
Q  1 tcagaagaatcaaaagggggagaagtgcaatgcaatca 38  Q
    |||||||||||||||| |||||||||||||||||||||    
T  50295925 tcagaagaatcaaaagagggagaagtgcaatgcaatca 50295888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 167 - 238
Target Start/End: Original strand, 46692071 - 46692141
Alignment:
Q  167 aaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgag 238  Q
    ||||||||||||||  |||||||||||||| ||| ||| || | | |||||||||||||| |||||||||||    
T  46692071 aaattgtgagcactcgactcaccaaacaactaaa-tgtgagaattagactcaccaaacaaccaaattgtgag 46692141  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 151 - 216
Target Start/End: Original strand, 2593601 - 2593666
Alignment:
Q  151 aactcaccaaacaactaaattgtgagcacttaact-caccaaacaaccaaattgttagcactcgact 216  Q
    ||||||||||| ||| ||||||||||||||| ||| | ||||||||||||||||| |||||| ||||    
T  2593601 aactcaccaaagaac-aaattgtgagcacttgacttccccaaacaaccaaattgtgagcacttgact 2593666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 153 - 202
Target Start/End: Complemental strand, 42530783 - 42530734
Alignment:
Q  153 ctcaccaaacaactaaattgtgagcacttaactcaccaaacaaccaaatt 202  Q
    ||||||||||||| ||| |||||| |||  ||||||||||||||||||||    
T  42530783 ctcaccaaacaaccaaagtgtgagaactcgactcaccaaacaaccaaatt 42530734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 194 - 226
Target Start/End: Original strand, 46692067 - 46692099
Alignment:
Q  194 aaccaaattgttagcactcgactcaccaaacaa 226  Q
    ||||||||||| |||||||||||||||||||||    
T  46692067 aaccaaattgtgagcactcgactcaccaaacaa 46692099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0499 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 1)
Name: scaffold0499
Description:

Target: scaffold0499; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 163 - 238
Target Start/End: Original strand, 7266 - 7341
Alignment:
Q  163 aactaaattgtgagcacttaactcaccaaacaaccaaattgttagcactcgactcaccaaacaagcaaattgtgag 238  Q
    |||||||||||||||| ||  |||| ||||||| ||| |||| ||||||||||||||||||||| ||| |||||||    
T  7266 aactaaattgtgagcatttgtctcaacaaacaatcaatttgtgagcactcgactcaccaaacaaccaatttgtgag 7341  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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