View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11615_low_6 (Length: 270)
Name: NF11615_low_6
Description: NF11615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11615_low_6 |
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| [»] chr8 (2 HSPs) |
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| [»] chr7 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 93; Significance: 2e-45; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 93; E-Value: 2e-45
Query Start/End: Original strand, 170 - 270
Target Start/End: Complemental strand, 43618721 - 43618621
Alignment:
| Q |
170 |
aggtgacatcattattaatctagaacacaaaaacccttcttcttatgccctcatttcgttcattttttagccttctcccactaaagtaaaagcatcatcg |
269 |
Q |
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| T |
43618721 |
aggtgacatcattattaatctagaacacaaaaacccttcttcttatgccctcatttgcttcattttttagccttctcccactaaagtaaaagcatcatcg |
43618622 |
T |
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| Q |
270 |
t |
270 |
Q |
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| T |
43618621 |
t |
43618621 |
T |
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Target: chr8; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 43618864 - 43618795
Alignment:
| Q |
1 |
aggtgcatcaacccttaaacaaaaatttcttcattgcaatattgcccccctaaatactagcaattgcgca |
70 |
Q |
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| T |
43618864 |
aggtgcatcaacccttaaacaaaaatttcttcattgcaatattgcccccctaaatactagcaattgcgca |
43618795 |
T |
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Target: chr3 (Bit Score: 38; Significance: 0.000000000002; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 215 - 267
Target Start/End: Original strand, 5565152 - 5565205
Alignment:
| Q |
215 |
tgccctcatttcgttcatttttt-agccttctcccactaaagtaaaagcatcat |
267 |
Q |
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| T |
5565152 |
tgcccttatttcgatcattttttcagccttctcccactaaagtaaaagcatcat |
5565205 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 222
Target Start/End: Original strand, 50834437 - 50834465
Alignment:
| Q |
194 |
acacaaaaacccttcttcttatgccctca |
222 |
Q |
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| T |
50834437 |
acacaaaaacccttcttcttatgccctca |
50834465 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 194 - 222
Target Start/End: Complemental strand, 50841416 - 50841388
Alignment:
| Q |
194 |
acacaaaaacccttcttcttatgccctca |
222 |
Q |
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| T |
50841416 |
acacaaaaacccttcttcttatgccctca |
50841388 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 242 - 270
Target Start/End: Original strand, 7854246 - 7854274
Alignment:
| Q |
242 |
ttctcccactaaagtaaaagcatcatcgt |
270 |
Q |
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| T |
7854246 |
ttctcccactaaagtaaaagcatcatcgt |
7854274 |
T |
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