View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11615_low_9 (Length: 248)
Name: NF11615_low_9
Description: NF11615
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11615_low_9 |
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Alignment Details
Target: chr2 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 40482487 - 40482715
Alignment:
| Q |
3 |
agtggatacacttataagaatcaaactaaataactaggagacgcattttaaggatgtttcgtaattttggttaatttaggattgtagggacaatatctga |
102 |
Q |
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| T |
40482487 |
agtggatacacttttaagaatcaaactaaataactacgagacgctttttaaggatgttttgtaattttggttaattagggattgtagggacaatatctga |
40482586 |
T |
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| Q |
103 |
cacattcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
202 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40482587 |
cacattcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
40482686 |
T |
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| Q |
203 |
gctgaagtacctaagagcaatcttagaat |
231 |
Q |
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| T |
40482687 |
gctgaagtacctaagagcaatcttagaat |
40482715 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 3 - 231
Target Start/End: Original strand, 40513161 - 40513389
Alignment:
| Q |
3 |
agtggatacacttataagaatcaaactaaataactaggagacgcattttaaggatgtttcgtaattttggttaatttaggattgtagggacaatatctga |
102 |
Q |
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||||||||||||| |||||||||||||||||||||| ||||||| |||||||||||||| |||||||||||||||| |||||||||||||||||||||| |
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| T |
40513161 |
agtggatacacttttaagaatcaaactaaataactacgagacgctttttaaggatgttttgtaattttggttaattagggattgtagggacaatatctga |
40513260 |
T |
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| Q |
103 |
cacattcaaggaccaaagtggccttttaaacataaacaaacagactcatatgtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
202 |
Q |
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|||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40513261 |
cacattcaaggaccaaagcggccttttaaacataaacaaacagactcataggtacctgaggaagaggcaatgcggcaataaagtctaaccaaaaaccctt |
40513360 |
T |
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| Q |
203 |
gctgaagtacctaagagcaatcttagaat |
231 |
Q |
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||||||||||||||||||||||||||||| |
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| T |
40513361 |
gctgaagtacctaagagcaatcttagaat |
40513389 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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