View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11616_high_1 (Length: 570)
Name: NF11616_high_1
Description: NF11616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11616_high_1 |
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Alignment Details
Target: chr2 (Bit Score: 516; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 516; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Complemental strand, 40093857 - 40093305
Alignment:
| Q |
1 |
caatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtgaagtcaatcgcaa |
100 |
Q |
| |
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|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||| |
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| T |
40093857 |
caatcgacatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccctgtgaagtcaatcacaa |
40093758 |
T |
|
| Q |
101 |
ctggattactgccggatggagcatcaaagtttgtctaatgcaacatgcatgacattggttagtagcaaaaaacatttttcatatagtggcgttcttttaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093757 |
ctggattactgccggatggagcatcaaagtttgtctaatgcaacatgcatgacattggttagtagcaaaaaacatttttcatatagtggcgttcttttaa |
40093658 |
T |
|
| Q |
201 |
tttgaaattccataacttatatcaagggaaacaataaattgaaaattaaattaccttgtaccaaatcaatggttgtttcttagggaaagtagtctttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093657 |
tttgaaattccataacttatatcaagggaaacaataaattgaaaattaaattaccttgtaccaaatcaatggttgtttcttagggaaagtagtctttgaa |
40093558 |
T |
|
| Q |
301 |
ttccacgctccggaacttccactagagagacctaaatcttcaccttttaggccaacctgtatcaaaagaattaactccattaactatgtaagactaataa |
400 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
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| T |
40093557 |
ttccacgctccggaacttccactagagagacctaaatcttcaccttttaggccaacctgtatcaaaagaattaactccattaactatgtaagactaacaa |
40093458 |
T |
|
| Q |
401 |
atagtcttcgatcaaaagtgaagactgacctgatatgtccacttccgagaggagagatcaagagtcttgttgccattcttcaaacctttcaatatcactg |
500 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40093457 |
atagtcttcgatcaaaagtgaagactgacctgatatgtccacttccgagaggagagatcaagagtcttgttgccattcttcaaacctttcaatatcactg |
40093358 |
T |
|
| Q |
501 |
gaccggtgatccccgctccccatgtgtcnnnnnnngctccatagttctgatgt |
553 |
Q |
| |
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|||||||||||||||||||||||||||| |||||||||||||||||| |
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|
| T |
40093357 |
gaccggtgatccccgctccccatgtgtcaaaaaaagctccatagttctgatgt |
40093305 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 380; E-Value: 0
Query Start/End: Original strand, 1 - 553
Target Start/End: Complemental strand, 40063226 - 40062653
Alignment:
| Q |
1 |
caatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtgaagtcaatcgcaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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|
| T |
40063226 |
caatcggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccatccccgtgaagtcaatcgcaa |
40063127 |
T |
|
| Q |
101 |
ctggattactgccggatggagcatcaaagtttgtctaatgcaacatgcatgacattggttagtagcaaaaaacatttttcatatagtggcgttcttttaa |
200 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||||||| ||||||||| |
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|
| T |
40063126 |
ctggattactgccggatggagcatcaaagtttgtctaatgcaacatgtatgacattggttagtaccaaaaaacatttttcatatagtggcattcttttaa |
40063027 |
T |
|
| Q |
201 |
tttgaaattccataacttatatcaagggaaacaataaattgaaaattaaattaccttgtaccaaatcaatggttgtttcttagggaaagtagtctttgaa |
300 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||| || ||| |
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|
| T |
40063026 |
tttgaaattccataacttatataaagggaaacaataaattgaaaataaaattaccttgtaccaaatcaatggttgattcttagggaaagtagactgtgag |
40062927 |
T |
|
| Q |
301 |
ttccacgctccggaacttccactagagagacctaaatcttcaccttttaggccaacctgtatcaaaagaattaactccattaactat---------gtaa |
391 |
Q |
| |
|
||||| || ||||||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||||||||||||| || ||| |
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|
| T |
40062926 |
ttccaaccttcggaacttccactggacagacctaaatcttcaccttttaggccaacctgtatcaatagaattaactccattaacaatcaatctccattaa |
40062827 |
T |
|
| Q |
392 |
gactaataaat------------agtcttcgatcaaaagtgaagactgacctgatatgtccacttccgagaggagagatcaagagtcttgttgccattct |
479 |
Q |
| |
|
||||||||||| |||||| |||||||||| ||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
40062826 |
gactaataaatagtctttgatcaagtctttgatcaaaagttaagactgacctgatatgtccacttctgagaggagagatcaagagtgttgttgccattct |
40062727 |
T |
|
| Q |
480 |
tcaaacctttcaatatcactggaccggtgatccccgctccccatgtgtcnnnnnnngctccatagttctgatgt |
553 |
Q |
| |
|
|||||||||||||| | ||||||||||||||||||||||||||| |||| |||||||||||||||||| |
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|
| T |
40062726 |
tcaaacctttcaatgttactggaccggtgatccccgctccccatctgtcaaaaaaagctccatagttctgatgt |
40062653 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 323; E-Value: 0
Query Start/End: Original strand, 5 - 553
Target Start/End: Complemental strand, 40081573 - 40081002
Alignment:
| Q |
5 |
cggcatttgaagcaacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtgaagtcaatcgcaactgg |
104 |
Q |
| |
|
||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
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|
| T |
40081573 |
cggcatttgaagcgacatatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcaccttttcccatccccgtgaagtcaatcgcaactgg |
40081474 |
T |
|
| Q |
105 |
attactgccggatggagcatcaaagtttgtctaatgcaacatgcatgacattggttagtagcaa-aaaacatttttcatatagtggcgttcttttaattt |
203 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||| || ||||||||||||||||| |||||||||||||||||||||| || ||||||| |
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|
| T |
40081473 |
attactgccggatggagcatcaaagtttgtctagtgcaacatgtattacattggttagtagcaaaaaaacatttttcatatagtggcatttccttaattt |
40081374 |
T |
|
| Q |
204 |
gaaattccataacttatatcaagggaaacaataaattgaaaattaaattaccttgtaccaaatcaatggttgtttcttagggaaagtagtctttgaattc |
303 |
Q |
| |
|
|||||||| | |||||||||||||||||||||||||||||||| ||| |||||||||||||| ||||||||| ||||||||| |||||| || ||||||| |
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|
| T |
40081373 |
gaaattcccttacttatatcaagggaaacaataaattgaaaataaaactaccttgtaccaaaccaatggttggttcttagggtaagtagactgtgaattc |
40081274 |
T |
|
| Q |
304 |
cacgctccggaacttccactagagagacctaaatcttcaccttttaggccaacctgtatcaaaagaattaactccattaactatgt-------------- |
389 |
Q |
| |
|
||| |||| |||||||||||||| |||||||||||||| ||||||||||||| ||||||| ||| |||||||||||||||| |||| |
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| T |
40081273 |
caccctccagaacttccactagacagacctaaatcttcgccttttaggccaatctgtatcgaaaaaattaactccattaacaatgtattccattaaagtg |
40081174 |
T |
|
| Q |
390 |
-------aagactaataaatagtcttcgatc-aaaagtgaagactgacctgatatgtccacttccgagaggagagatcaagagtcttgttgccattcttc |
481 |
Q |
| |
|
|||| ||||||||||| ||||||| |||| | |||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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|
| T |
40081173 |
ataaagaaagaataataaatagttttcgatcaaaaatttaagattgacctgatatgtccacttccgagaggagagatcaagagtgttgttgccattcttc |
40081074 |
T |
|
| Q |
482 |
aaacctttcaatatcactggaccggtgatccccgctccccatgtgtcnnnnnnngctccatagttctgatgt |
553 |
Q |
| |
|
||||||||||||||||| |||||||||||||| |||||| |||||| |||||||||||||||||| |
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|
| T |
40081073 |
aaacctttcaatatcacgggaccggtgatccctgctcccactgtgtcaaaaaaggctccatagttctgatgt |
40081002 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 64; Significance: 1e-27; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 22 - 137
Target Start/End: Original strand, 22012641 - 22012756
Alignment:
| Q |
22 |
tatgtaggccagtatcgcccaatgctttgtccatttacccaagcctcgccttttcccatccccgtgaagtcaatcgcaactggattactgccggatggag |
121 |
Q |
| |
|
||||| |||||||||||||||||||| ||||| || |||||||| |||||||||||||||||||||||||| || ||||| || ||||| ||||| |||| |
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|
| T |
22012641 |
tatgttggccagtatcgcccaatgctctgtccgttcacccaagcttcgccttttcccatccccgtgaagtcgattgcaaccgggttacttccggagggag |
22012740 |
T |
|
| Q |
122 |
catcaaagtttgtcta |
137 |
Q |
| |
|
|| ||||||| ||||| |
|
|
| T |
22012741 |
caacaaagttcgtcta |
22012756 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 29; Significance: 0.0000008; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 40 - 80
Target Start/End: Original strand, 44356174 - 44356214
Alignment:
| Q |
40 |
ccaatgctttgtccatttacccaagcctcgccttttcccat |
80 |
Q |
| |
|
|||||||||||||||||||||||||| || |||||| |||| |
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|
| T |
44356174 |
ccaatgctttgtccatttacccaagcttcaccttttgccat |
44356214 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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