View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11616_high_2 (Length: 404)
Name: NF11616_high_2
Description: NF11616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11616_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 75 - 388
Target Start/End: Original strand, 44376127 - 44376434
Alignment:
| Q |
75 |
ggaagttccttttacgtacccaacagggtaaacatttccatgaaccgggaacacaaccgatgaaccagaacgaaagcggttcaagaatgaaggcgatgat |
174 |
Q |
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| T |
44376127 |
ggaagttccttttacgtacccaacagggtaaacatttccatgaaccgggaacacaaccgatgaaccagaacgaaagcggttcaagaatgaaggcgatgat |
44376226 |
T |
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| Q |
175 |
---gacgacgatgatgaaggctgttcatatgaaagaatggagtttcttccatttgaacttgaacttgaacttgaaattttgggttnnnnnnnnnnnnnnn |
271 |
Q |
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| T |
44376227 |
gacgacgacgatgatgaaggctgttcatatgaaagaatggagtttcttccat------ttgaacttgaacttgaaattttgggtt---tactactactac |
44376317 |
T |
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| Q |
272 |
nnncaaaccaagctaaacaagtagaggaactcaataagagtagaacaagaaagaatcccaatttccctgacttcatgatttctctatttcaagcatgaaa |
371 |
Q |
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| T |
44376318 |
taccaaaccaagctaaacaagtagaggaactcaataagagtagaacaacaaagaatcccaatttccctgacttcatgatttctctatttcaagcatgaaa |
44376417 |
T |
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| Q |
372 |
taaagatattaattaat |
388 |
Q |
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| T |
44376418 |
taaagatattaattaat |
44376434 |
T |
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