View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11616_high_3 (Length: 355)
Name: NF11616_high_3
Description: NF11616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11616_high_3 |
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Alignment Details
Target: chr3 (Bit Score: 274; Significance: 1e-153; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 274; E-Value: 1e-153
Query Start/End: Original strand, 37 - 337
Target Start/End: Complemental strand, 2772637 - 2772335
Alignment:
| Q |
37 |
aaatgagagtcaatgacactgccgaaatatacctttcttgatgtttgtttatctaaaactattgttgtt---ttcaaagtgagcgatttttagttatgaa |
133 |
Q |
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| T |
2772637 |
aaatgagagtcaatgacactgcccaaatatacctttcttgatgtttgtttatctaaaactattgttgttgttttcaaagtgagcgatttttagttatgaa |
2772538 |
T |
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| Q |
134 |
taggttgaattcgaaaatattattaaaaaagagtaaatcagaaattgaaacagttaccgctatgcacatttcatacgagtgcaagaagaagcatatctat |
233 |
Q |
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| T |
2772537 |
taggttgaattcgaaaatattattaaaaa-gagtaaatcagaaattgaaacagttaccgctatgcacatttcatacgagtgcaagaagaagcatatcaat |
2772439 |
T |
|
| Q |
234 |
gatatagaattgaaaacgaaaccttcagctaactttgatagctaattagaaccaaccagactttgaaataggttctagtgtaaaggcagaagagacggca |
333 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
2772438 |
gatatagaattgaaaacgaaaccttcagctaactttgatagctaattagaaccaaccagactttgaaataggttctagtgtaaaggcagaagagacggca |
2772339 |
T |
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| Q |
334 |
ttag |
337 |
Q |
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|||| |
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| T |
2772338 |
ttag |
2772335 |
T |
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