View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11616_low_5 (Length: 328)
Name: NF11616_low_5
Description: NF11616
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11616_low_5 |
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Alignment Details
Target: chr3 (Bit Score: 258; Significance: 1e-143; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 258; E-Value: 1e-143
Query Start/End: Original strand, 1 - 311
Target Start/End: Original strand, 25729367 - 25729674
Alignment:
| Q |
1 |
tgtttcttaaacttattttcaaaataatcccttttaaaataatattttctg-gagttttcatccctaattgatacaaccgttaaaaatttagaatataaa |
99 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||||||||||||||| |||||||||| |
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| T |
25729367 |
tgtttcttaaacttattttcaaaataatcccttttaaaataatattttttttgagttttcatccgtaattgatacaaccgttaaaaattaagaatataaa |
25729466 |
T |
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| Q |
100 |
agctgctttaaataaaaagttattctgagtagtttctaacaaaaatcattttgatcattctttttctttagaagatagatttcatttttgttttgctcaa |
199 |
Q |
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|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||| |
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| T |
25729467 |
agctgctttaaataaaaagttattctgagtagtttc-aacaaaaatcattttgatcattgtttttctttagaagatagatttcatttttgttttcctcaa |
25729565 |
T |
|
| Q |
200 |
aaatctccaaaaagtaatattgaataccactagcaccaaatgtgtaccccaagttaccttaacttcaggctctttaaagattcaatttcactcttgagtt |
299 |
Q |
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||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25729566 |
aaatctccaaaaa---atattgaataccactagcaccaaatgtgtaccccaagttaccttaacttcaggctctttaaagattcaatttcactcttgagtt |
25729662 |
T |
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| Q |
300 |
gtcgcctatttt |
311 |
Q |
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|||||||||||| |
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| T |
25729663 |
gtcgcctatttt |
25729674 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 225 - 262
Target Start/End: Original strand, 25729691 - 25729727
Alignment:
| Q |
225 |
accactagcaccaaatgtgtaccccaagttaccttaac |
262 |
Q |
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||||||||||||||||||||| |||||||||||||||| |
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| T |
25729691 |
accactagcaccaaatgtgta-cccaagttaccttaac |
25729727 |
T |
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