View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11617_high_1 (Length: 835)
Name: NF11617_high_1
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_high_1 |
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Alignment Details
Target: chr7 (Bit Score: 214; Significance: 1e-117; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 46 - 388
Target Start/End: Complemental strand, 47426457 - 47426089
Alignment:
| Q |
46 |
tgaaattggaatttttgtaacaaaacttgatgtatgttttgtggcaatgctatacttg-------------------aatatgttaggaatgatgattta |
126 |
Q |
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| T |
47426457 |
tgaaattggaatttttgtaacaaaacttgatgtatgttttgtagcaatgctatatttgttaagaataatgatacgtgaatatgttaggaatgat---tta |
47426361 |
T |
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| Q |
127 |
tatgaagaggtgaggagaaattagtagaggatggagatcgaaagggaggatnnnnnnnttaatgatggtgttaatgtggaggttacggtggaatataatg |
226 |
Q |
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| T |
47426360 |
tatgaaggggtgaggagaaattagtagaggatggagatcgaaagggaggataaaaaaattaatgatggtgttaatgtggaggttacggtggaatataatg |
47426261 |
T |
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| Q |
227 |
acaccaatagtacttcatatatatgtttaataaaggttatgtctttgaaacacaacactaaatacaaat-----------caaatttacacgcctaaaat |
315 |
Q |
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| T |
47426260 |
acaccaatagtacttcatatatatgtttaataaaggttatgtctttgaaacacaacactaaatacaaattaaaaacaagacaaatttacacgcctaaaat |
47426161 |
T |
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| Q |
316 |
gattgttattaatgaggatcgattatgttaatatttttgtagtgaattttgatcgtaataatgtatagtttaa |
388 |
Q |
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| T |
47426160 |
gattgttattaatgaggatcga-tatgttaatatttttgtagtgaattttgatcgtaataatgtttagtttaa |
47426089 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 163; E-Value: 1e-86
Query Start/End: Original strand, 400 - 594
Target Start/End: Complemental strand, 47426007 - 47425813
Alignment:
| Q |
400 |
ggcattgtgcgtgatatgccaagacgtatatataaataacaattgttttatcattttctctaggtttttagatgaactaaatctaaatccttgtcacgaa |
499 |
Q |
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| T |
47426007 |
ggcactgtgcgtgatatgccaagacgtatatataaataacaattattttatcattttctctaggtttttagatgaactaaatctaaatccttgtcatgaa |
47425908 |
T |
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| Q |
500 |
caactaattcatgtggtcgataagctattgatctagtcattctccatgaatatgacgatctttctttccacttctcatctcattcaaccttgtat |
594 |
Q |
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| T |
47425907 |
caactaattcatgtggtcaatccgcaattgatctagtcattcttcatgaatatgacgatctttctttccacttctcatctcattcaaccttgtat |
47425813 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 134; E-Value: 3e-69
Query Start/End: Original strand, 676 - 821
Target Start/End: Complemental strand, 47425731 - 47425586
Alignment:
| Q |
676 |
ttacactaaagtgaaagcttcttgtataacgaatccttaatcgcattagttactcacatatccaagacacttgattagtagtatggtgtccaaactcact |
775 |
Q |
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| T |
47425731 |
ttacactaaagtgaaagcttcttgtataacaaatccttaatcgcattagttactcacatatccaagacacttgattagtagtatggtgtccaaactcact |
47425632 |
T |
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| Q |
776 |
tgtgtggttgttcaacgcttaatatggatggttatttgggctcccc |
821 |
Q |
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| T |
47425631 |
tgtgtggttgttcaacactcaatatggatggttatttgggctcccc |
47425586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000003
Query Start/End: Original strand, 20 - 49
Target Start/End: Complemental strand, 47426516 - 47426487
Alignment:
| Q |
20 |
gtacaaagtaagcaaagattcaatattgaa |
49 |
Q |
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| T |
47426516 |
gtacaaagtaagcaaagattcaatattgaa |
47426487 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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