View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11617_high_13 (Length: 322)
Name: NF11617_high_13
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_high_13 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 295; Significance: 1e-166; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 295; E-Value: 1e-166
Query Start/End: Original strand, 1 - 311
Target Start/End: Complemental strand, 31806263 - 31805953
Alignment:
| Q |
1 |
agacaaaaatgtatatgtatatgttatttccgttttctttagtttttataaagggacaaaaatcacgtcgaaacaccgttacagccgtgatgaaacacca |
100 |
Q |
| |
|
|||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31806263 |
agacaaaaatgtatatgtatatgtcatttccgttttctttagtttttacaaagggacaaaaatcacgtcgaaacaccgttacagccgtgatgaaacacca |
31806164 |
T |
|
| Q |
101 |
ttaaggccggaacaaaacgccaatcatggcaatatagacatacaattccattgtttttctattgagatggatgagaataacatttttagtatatatttga |
200 |
Q |
| |
|
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31806163 |
ttaaggccggaacaaaacgtcaatcatggcaatatagacatacaattccattgtttttctattgagatggatgagaataacatttttagtatatatttga |
31806064 |
T |
|
| Q |
201 |
acatagattatataatgttatctctcctttaggttcttttctctagtttagagattcaaatttatctctaaatataaaaaaggaggaaaattagggttat |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
31806063 |
acatagattatataatgttatctctcctttaggttcttttctctagtttagagcttcaaatttatctctaaatataaaaaaggaggaaaattagggttat |
31805964 |
T |
|
| Q |
301 |
gatttcttctc |
311 |
Q |
| |
|
||||||||||| |
|
|
| T |
31805963 |
gatttcttctc |
31805953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 134 - 224
Target Start/End: Original strand, 33049094 - 33049184
Alignment:
| Q |
134 |
atagacatacaattccattgtttttctattgagatggatgagaataacatttttagtatatatttgaacatagattatataatgttatctc |
224 |
Q |
| |
|
||||||| | ||| ||||| |||||| |||||||||||||| ||| |||||||||||| ||||||||||||| |||| | || |||||||| |
|
|
| T |
33049094 |
atagacagagaatcccattatttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattacagaaggttatctc |
33049184 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 210
Target Start/End: Original strand, 31742876 - 31742932
Alignment:
| Q |
154 |
tttttctattgagatggatgagaataacatttttagtatatatttgaacatagatta |
210 |
Q |
| |
|
|||||| |||||||||||||| ||| ||||||||| || ||||||||||||| |||| |
|
|
| T |
31742876 |
tttttcaattgagatggatgaaaatcacatttttaatacatatttgaacatatatta |
31742932 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 14867424 - 14867355
Alignment:
| Q |
154 |
tttttctattgagatggatgagaataacatttttagtatatatttgaacatagattatataatgttatct |
223 |
Q |
| |
|
|||||| |||||||||||||| ||| |||||||||||| ||||||||||||| |||| || ||||||||| |
|
|
| T |
14867424 |
tttttcaattgagatggatgaaaatcacatttttagtacatatttgaacataaattacatgatgttatct |
14867355 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 38; Significance: 0.000000000002; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 56 - 109
Target Start/End: Complemental strand, 55606514 - 55606461
Alignment:
| Q |
56 |
acaaaaatcacgtcgaaacaccgttacagccgtgatgaaacaccattaaggccg |
109 |
Q |
| |
|
|||||||||||| ||||||||||||||||||| ||||||||||| ||| ||||| |
|
|
| T |
55606514 |
acaaaaatcacgacgaaacaccgttacagccgcgatgaaacaccgttacggccg |
55606461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Original strand, 11440587 - 11440656
Alignment:
| Q |
154 |
tttttctattgagatggatgagaataacatttttagtatatatttgaacatagattatataatgttatct |
223 |
Q |
| |
|
|||||| ||| |||| ||||| ||| | |||||||||| |||||||| |||| |||| |||||||||||| |
|
|
| T |
11440587 |
tttttcaattaagatagatgaaaatcatatttttagtacatatttgatcataaattacataatgttatct |
11440656 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 154 - 222
Target Start/End: Original strand, 53527059 - 53527127
Alignment:
| Q |
154 |
tttttctattgagatggatgagaataacatttttagtatatatttgaacatagattatataatgttatc |
222 |
Q |
| |
|
|||||| |||||| ||||||| ||| |||||||||||| | | ||||||||||| || ||||||||||| |
|
|
| T |
53527059 |
tttttcaattgaggtggatgaaaatgacatttttagtagagaattgaacatagaatacataatgttatc |
53527127 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 154 - 223
Target Start/End: Complemental strand, 24699967 - 24699898
Alignment:
| Q |
154 |
tttttctattgagatggatgagaataacatttttagtatatatttgaacatagattatataatgttatct |
223 |
Q |
| |
|
|||||| |||||||| ||||| ||| | |||||| |||||||||||| ||| |||| |||||||||||| |
|
|
| T |
24699967 |
tttttcaattgagatagatgaaaattatatttttcgtatatatttgataatatattacataatgttatct |
24699898 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University