View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11617_high_15 (Length: 286)

Name: NF11617_high_15
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11617_high_15
NF11617_high_15
[»] chr4 (16 HSPs)
chr4 (1-247)||(9134357-9134603)
chr4 (201-285)||(1616356-1616439)
chr4 (243-286)||(9134617-9134660)
chr4 (201-286)||(29728949-29729035)
chr4 (233-286)||(32818405-32818458)
chr4 (234-286)||(8604657-8604709)
chr4 (234-286)||(30472932-30472984)
chr4 (234-286)||(9064229-9064281)
chr4 (163-247)||(21691312-21691396)
chr4 (234-286)||(35065061-35065113)
chr4 (233-283)||(53713599-53713649)
chr4 (233-286)||(21691247-21691300)
chr4 (237-286)||(26617469-26617518)
chr4 (233-286)||(30357509-30357562)
chr4 (238-286)||(20712849-20712897)
chr4 (233-269)||(29779106-29779142)
[»] chr2 (11 HSPs)
chr2 (179-285)||(43501068-43501174)
chr2 (234-286)||(42740975-42741027)
chr2 (233-286)||(33019191-33019244)
chr2 (233-286)||(12037058-12037111)
chr2 (236-286)||(42982544-42982594)
chr2 (233-286)||(43717321-43717375)
chr2 (244-286)||(44439262-44439304)
chr2 (233-270)||(21234576-21234613)
chr2 (233-286)||(22535995-22536048)
chr2 (233-273)||(6327117-6327157)
chr2 (234-286)||(31453381-31453433)
[»] chr7 (9 HSPs)
chr7 (163-273)||(17111784-17111894)
chr7 (234-286)||(30182331-30182383)
chr7 (235-285)||(28725088-28725138)
chr7 (175-286)||(38123701-38123812)
chr7 (233-284)||(41386852-41386903)
chr7 (233-286)||(1410959-1411012)
chr7 (233-286)||(27571859-27571912)
chr7 (233-285)||(597982-598033)
chr7 (234-286)||(22195862-22195914)
[»] chr8 (14 HSPs)
chr8 (234-286)||(13384689-13384741)
chr8 (199-286)||(38335896-38335983)
chr8 (234-286)||(11572493-11572545)
chr8 (188-286)||(15677851-15677949)
chr8 (233-286)||(11574279-11574332)
chr8 (214-286)||(7244636-7244708)
chr8 (234-286)||(30098908-30098960)
chr8 (234-286)||(38868496-38868548)
chr8 (187-286)||(32994277-32994376)
chr8 (232-286)||(4662938-4662992)
chr8 (236-286)||(16972099-16972149)
chr8 (236-286)||(32927892-32927942)
chr8 (201-286)||(40847981-40848067)
chr8 (234-286)||(6027084-6027136)
[»] chr5 (12 HSPs)
chr5 (190-286)||(39097200-39097296)
chr5 (234-286)||(9818732-9818784)
chr5 (234-286)||(18851117-18851169)
chr5 (234-286)||(38845441-38845493)
chr5 (190-271)||(1102087-1102169)
chr5 (235-281)||(22226276-22226322)
chr5 (234-284)||(31906257-31906307)
chr5 (233-286)||(18637281-18637334)
chr5 (233-286)||(38587084-38587136)
chr5 (254-286)||(370768-370800)
chr5 (234-286)||(6951340-6951392)
chr5 (234-286)||(11648080-11648132)
[»] chr6 (13 HSPs)
chr6 (233-286)||(3482043-3482096)
chr6 (237-286)||(12126163-12126212)
chr6 (233-286)||(30927040-30927093)
chr6 (233-285)||(765422-765474)
chr6 (234-286)||(4910906-4910958)
chr6 (187-286)||(6895985-6896084)
chr6 (175-245)||(33136577-33136647)
chr6 (234-286)||(434272-434324)
chr6 (244-286)||(31305882-31305924)
chr6 (233-286)||(1485181-1485234)
chr6 (234-283)||(16540105-16540154)
chr6 (234-286)||(2234513-2234565)
chr6 (234-274)||(7280488-7280528)
[»] chr1 (9 HSPs)
chr1 (201-286)||(28287371-28287456)
chr1 (188-286)||(11049202-11049300)
chr1 (234-286)||(28083923-28083975)
chr1 (234-286)||(48549047-48549099)
chr1 (234-284)||(3016160-3016210)
chr1 (241-286)||(7524118-7524163)
chr1 (188-241)||(47322004-47322057)
chr1 (234-286)||(3416078-3416130)
chr1 (238-286)||(3515820-3515868)
[»] chr3 (9 HSPs)
chr3 (233-286)||(32111991-32112045)
chr3 (233-286)||(40147885-40147938)
chr3 (234-276)||(30948075-30948117)
chr3 (234-271)||(7742193-7742230)
chr3 (233-286)||(37335069-37335122)
chr3 (233-270)||(41115413-41115450)
chr3 (237-286)||(54596819-54596868)
chr3 (234-286)||(35058065-35058117)
chr3 (233-269)||(40339223-40339259)
[»] scaffold0168 (1 HSPs)
scaffold0168 (234-286)||(31824-31876)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 9134357 - 9134603
Alignment:
Q  1 ttgtttatattttcatttgatttctttcatgagacaatacaatacttgtatatatttacatagtaaggtaaccaacaattacacgataactaccgagtaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| |||||    
T  9134357 ttgtttatattttcatt-gatttctttcatgagacaatacaatacttgtatatatatacataataaggtaaccaacaattacactataactaccaagtaa 9134455  T
Q  101 ctcgctaatataatataactaaaatacccctattaaaataaactatctaagtgtatgtttggcttctagagggaccaaaattaa-tcctggaggtgtata 199  Q
    || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  9134456 cttgctaatataatatacctaaaatacccctattaaaataaactatctaagtgtatgtttggcttctagagggaccaaaattaatttctggaggtgtata 9134555  T
Q  200 tttgattttgacaagtttagttgttatcgagtggaattgattttactt 247  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9134556 tttgattttgacatgtttagttgttatcgagtggaattgattttactt 9134603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 285
Target Start/End: Original strand, 1616356 - 1616439
Alignment:
Q  201 ttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgatt 285  Q
    |||||| ||||| | || ||||||||||||| ||||||||| ||||| |||||| |||||||||||||||||| |||||||||||    
T  1616356 ttgattctgacatgattggttgttatcgagtagaattgattctactt-aagctacaatttgtagcttttgattctagaattgatt 1616439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 9134617 - 9134660
Alignment:
Q  243 tacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9134617 tacttgaagctaaaatttgtagcttttgattttagaattgattt 9134660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 29728949 - 29729035
Alignment:
Q  201 ttgattttgacaagtttagttgttatcgagtggaattgatt-ttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||||||||||| |||| | |||||| ||||||||| | |||||||| ||||| ||| |||||||||||  |||||||||||    
T  29728949 ttgattttgacaagtttggttgctctcgagtagaattgattataacttgaagttaaaaattgaagcttttgattcaagaattgattt 29729035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 32818458 - 32818405
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| || ||||||||| |||||||||||||||||| ||||||||||||    
T  32818458 gaattgattctatttgaagctagaatttgtagcttttgattctagaattgattt 32818405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 8604709 - 8604657
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||| |||||||||||| |||| ||||||||||||    
T  8604709 aattgattctacttgaagctaagatttgtagctttcgattctagaattgattt 8604657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 30472932 - 30472984
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||||||| ||| || ||||||||| |||||||||||||||||||||    
T  30472932 aattgattttacttcaagttagaatttgtagtttttgattttagaattgattt 30472984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 9064229 - 9064281
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| |||||||| ||| ||||||||| |||||||| ||||||||||||    
T  9064229 aattgattctacttgaaactagaatttgtagtttttgattctagaattgattt 9064281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 21691396 - 21691312
Alignment:
Q  163 cttctagagggaccaaaattaatcctggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttactt 247  Q
    ||||||||||||||| |||| || ||||||||||| | |||||| |||||  ||| |||||| |||||| | ||||||| |||||    
T  21691396 cttctagagggaccagaattgattctggaggtgtagaattgattctgacatatttggttgttgtcgagtagtattgattctactt 21691312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 35065061 - 35065113
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||||||||||||||  ||||||  ||||||||| ||||||||||||    
T  35065061 aattgattttacttgaagctagtatttgtgacttttgattctagaattgattt 35065113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 53713649 - 53713599
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattga 283  Q
    ||||| ||||||||||||||||  ||||||||||||||||| || ||||||    
T  53713649 gaattaattttacttgaagctacgatttgtagcttttgattctataattga 53713599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 21691300 - 21691247
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||  ||||||| |||| |||||||||||||| || ||||||||||||    
T  21691300 gaattgattcaacttgaaactaagatttgtagcttttggttgtagaattgattt 21691247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 26617469 - 26617518
Alignment:
Q  237 tgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||| |||||||||||| ||| |||||||||||||| || |||||||||    
T  26617469 tgattctacttgaagctagaatctgtagcttttgattataaaattgattt 26617518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 30357509 - 30357562
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| |||||||||||   ||||||||||||||||| || |||||||||    
T  30357509 gaattgattctacttgaagctgtgatttgtagcttttgattatataattgattt 30357562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 20712897 - 20712849
Alignment:
Q  238 gattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||| |||||||||||||||||||||| |||| |||  |||||||||||    
T  20712897 gattctacttgaagctaaaatttgtagttttttattgaagaattgattt 20712849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 29779142 - 29779106
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagctttt 269  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  29779142 gaattgattctacttgaagctagaatttgtagctttt 29779106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 43501068 - 43501174
Alignment:
Q  179 aattaatcctggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttaga 278  Q
    |||| ||||||||| |||| | |||||| ||||| |||| |||| | || ||| ||||||||| |||||||| |||  ||||||||||||||||||||||    
T  43501068 aattgatcctggagctgtagaattgattctgacatgtttggttgctttcaagtagaattgattctacttgaaactaggatttgtagcttttgattttaga 43501167  T
Q  279 attgatt 285  Q
    |||||||    
T  43501168 attgatt 43501174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 42740975 - 42741027
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||    
T  42740975 aattgattctacttgaagctaagatttgtagcttttgattctagaattgattt 42741027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 33019244 - 33019191
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| || ||||||||| ||||||||||||||| |||||||||||||||    
T  33019244 gaattgattatatttgaagctagaatttgtagcttttggttttagaattgattt 33019191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 12037058 - 12037111
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| || ||||| |||||||||||||||||||||| || |||||||||    
T  12037058 gaattgattctagttgaaactaaaatttgtagcttttgattctacaattgattt 12037111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 42982544 - 42982594
Alignment:
Q  236 ttgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||| |||||||||||| || |||||||||||||||  |||||||||||    
T  42982544 ttgattctacttgaagctagaaattgtagcttttgattccagaattgattt 42982594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 43717321 - 43717375
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagctt-ttgattttagaattgattt 286  Q
    ||||||||| |||||||||||| |||||||||||| ||| ||||| |||||||||    
T  43717321 gaattgattctacttgaagctagaatttgtagcttcttgcttttacaattgattt 43717375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 44439262 - 44439304
Alignment:
Q  244 acttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||||||||||| ||||||||||| || |||||||||    
T  44439262 acttgaagctaaaatttggagcttttgattctaaaattgattt 44439304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 21234613 - 21234576
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttg 270  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  21234613 gaattgattctacttgaagctagaatttgtagcttttg 21234576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 22535995 - 22536048
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| ||||||||  || |||||| ||||||||||||||||||| ||||    
T  22535995 gaattgattctacttgaatttagaatttgaagcttttgattttagaattaattt 22536048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 6327157 - 6327117
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgatt 273  Q
    ||||||||| |||||||| ||||||||||||| ||||||||    
T  6327157 gaattgattctacttgaaactaaaatttgtagtttttgatt 6327117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 31453381 - 31453433
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||||||||||  ||||||||| |  |||||||||    
T  31453381 aattgattctacttgaagctaaaatttgttccttttgattctgaaattgattt 31453433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 273
Target Start/End: Original strand, 17111784 - 17111894
Alignment:
Q  163 cttctagagggaccaaaattaatcctggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgt 262  Q
    |||||||||||  |||||||||| || ||| |||  | |||||| ||||| |||| |||| | |||||| ||||||||| ||||||||||||  ||||||    
T  17111784 cttctagaggggtcaaaattaattctagagatgtcgaattgattctgacatgtttggttgctttcgagtagaattgattctacttgaagctatgatttgt 17111883  T
Q  263 agcttttgatt 273  Q
    |||||||||||    
T  17111884 agcttttgatt 17111894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 30182383 - 30182331
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||    
T  30182383 aattgattctacttgaagctaaaaattgtagcttttgattctagaattaattt 30182331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 28725138 - 28725088
Alignment:
Q  235 attgattttacttgaagctaaaatttgtagcttttgattttagaattgatt 285  Q
    ||||||| |||||||||||| |||||||||||||||||| || ||||||||    
T  28725138 attgattatacttgaagctagaatttgtagcttttgattctataattgatt 28725088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 286
Target Start/End: Complemental strand, 38123812 - 38123701
Alignment:
Q  175 ccaaaattaatcctggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattt 274  Q
    |||||||| || || ||| |||| | |||||||| ||| |||| |||  |||  ||| ||||||||| |||||||||||| || ||||||||| | |||     
T  38123812 ccaaaattgattctagagatgtagaattgattttaacatgtttggttcctataaagtagaattgattctacttgaagctagaaattgtagcttctaattc 38123713  T
Q  275 tagaattgattt 286  Q
    ||||||||||||    
T  38123712 tagaattgattt 38123701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 41386903 - 41386852
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgat 284  Q
    ||||||||| ||||||||||||  ||||||||||||| ||| ||||||||||    
T  41386903 gaattgattctacttgaagctaggatttgtagcttttaattctagaattgat 41386852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 1410959 - 1411012
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| || |||||| || ||||||||| ||||| |||||||||||||||    
T  1410959 gaattgattctatttgaagttataatttgtagattttgtttttagaattgattt 1411012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 27571859 - 27571912
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| ||||||||| || || ||| ||||||||||| ||||||||||||    
T  27571859 gaattgattctacttgaagttagaaattggagcttttgattctagaattgattt 27571912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 598033 - 597982
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgatt 285  Q
    ||||||||| ||||||||||||||| |||||||||| |||| || ||||||||    
T  598033 gaattgattctacttgaagctaaaa-ttgtagctttcgattctataattgatt 597982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 22195862 - 22195914
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||||||| ||||||  ||||||| ||||||||| || |||||||||    
T  22195862 aattgattttactttaagctatgatttgtaacttttgattctaaaattgattt 22195914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 13384741 - 13384689
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||||||||    
T  13384741 aattgattctatttgaagctaaaatttgtagcttttgattctagaattgattt 13384689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 38335983 - 38335896
Alignment:
Q  199 atttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||| ||||  ||||| ||||||  ||||||||  | |||||||||| |||||| |||||||||||||||||||||||    
T  38335983 atttgattctgacatgtttgtttgttttcgagtataattgattccagttgaagctaagatttgttgcttttgattttagaattgattt 38335896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 11572545 - 11572493
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| |||||||||||||||||||||| |||||||| || |||||||||    
T  11572545 aattgattatacttgaagctaaaatttgtagattttgattataaaattgattt 11572493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 15677949 - 15677851
Alignment:
Q  188 tggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||| |||| | |||||| ||||| |||| |||| | || | | ||||||||| ||||||||||||  |||| |||||||||||| ||||||||||||    
T  15677949 tggagttgtacaattgattctgacatgtttggttgctttcaaatagaattgattctacttgaagctaggatttatagcttttgattatagaattgattt 15677851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 11574332 - 11574279
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||||||||| |||| ||||||||||| |||||| | ||||||||||||    
T  11574332 gaattgattttacttaaagcaaaaatttgtagattttgaatatagaattgattt 11574279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 7244708 - 7244636
Alignment:
Q  214 gtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| || |||| | ||||||||| |||||||| |||| || ||||| |||||||| ||||||||||||    
T  7244708 gtttagttattgtcgactagaattgattctacttgaaactaagatatgtagtttttgattctagaattgattt 7244636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 30098908 - 30098960
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||||| ||||||||| ||||||||||||| |||| ||||||| ||||    
T  30098908 aattgattttatttgaagctagaatttgtagctttcgattctagaattaattt 30098960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 38868496 - 38868548
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||| |||||||||||||| || || |||||||||    
T  38868496 aattgattctacttgaagctaagatttgtagcttttggttctataattgattt 38868548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 32994376 - 32994277
Alignment:
Q  187 ctggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||| ||||| | |||||| ||| | |||| |||| | ||| || ||||||||| ||||||||||||  |||| |||||||||| | ||||||||||||    
T  32994376 ctggatgtgtagaattgattatgatatgtttggttgctttcgtgtagaattgattctacttgaagctatgatttctagcttttgagtctagaattgattt 32994277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 4662992 - 4662938
Alignment:
Q  232 ggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||| ||| ||||||||||||  |||||||||||||| || ||||||||||||    
T  4662992 ggaatttattctacttgaagctaggatttgtagcttttgtttctagaattgattt 4662938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 16972149 - 16972099
Alignment:
Q  236 ttgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||| || ||||||||| ||||||||| |||| ||||||||||||||||    
T  16972149 ttgattgtatttgaagctagaatttgtagtttttaattttagaattgattt 16972099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 32927892 - 32927942
Alignment:
Q  236 ttgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||| ||||||||||||  ||||||||||||||||| ||||||| ||||    
T  32927892 ttgattctacttgaagctaggatttgtagcttttgattatagaattcattt 32927942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 40847981 - 40848067
Alignment:
Q  201 ttgattttgacaagtttagttgttatcgagtggaattgatttta-cttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||| ||| | ||||||||| |||| | |  ||||||||||  |||||||||| ||||| || ||||||||||||||||||||||    
T  40847981 ttgattctgatatgtttagttgctatcaaatataattgattttgtcttgaagctataatttatatcttttgattttagaattgattt 40848067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 6027136 - 6027084
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| |||||| || |||| | |||||||||||||| ||||||||||||    
T  6027136 aattgattctacttgtagttaaagtatgtagcttttgattctagaattgattt 6027084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 39097200 - 39097296
Alignment:
Q  190 gaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| | |||||||||||| |||| |||| | ||  || ||||||||| ||||||||||||||||||||| ||||| ||| || |||||||||    
T  39097200 gaggtgtagaattgattttgacatgtttggttggtttcaggtagaattgattctacttgaagctaaaatttgtaacttttaattatataattgattt 39097296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 9818732 - 9818784
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||  ||||||||||||||||| ||||||||||||    
T  9818732 aattgattctacttgaagctatgatttgtagcttttgattctagaattgattt 9818784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 18851169 - 18851117
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||  ||||||||||||||||| ||||||||||||    
T  18851169 aattgattctacttgaagctatgatttgtagcttttgattatagaattgattt 18851117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 38845441 - 38845493
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||| |||||||| |||||||| ||||||||||||    
T  38845441 aattgattctacttgaagctaagatttgtagtttttgattctagaattgattt 38845493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 1102087 - 1102169
Alignment:
Q  190 gaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgatttta-cttgaagctaaaatttgtagcttttga 271  Q
    |||| ||||| |||||||||||  |||||| |||| |  ||| |||||||||||| ||||||||||  |||||||||||||||    
T  1102087 gaggggtataattgattttgacgtgtttaggtgttctgaagtagaattgattttaacttgaagctaggatttgtagcttttga 1102169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 22226322 - 22226276
Alignment:
Q  235 attgattttacttgaagctaaaatttgtagcttttgattttagaatt 281  Q
    ||||||| ||||||||| ||  |||||||||||||||||||||||||    
T  22226322 attgattctacttgaagatagtatttgtagcttttgattttagaatt 22226276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 31906257 - 31906307
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgat 284  Q
    |||||||||||||||||||||  ||||||| ||||||||| || |||||||    
T  31906257 aattgattttacttgaagctatgatttgtaacttttgattatataattgat 31906307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 18637281 - 18637334
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||  |||||||||||| ||  ||||||||||||| ||||||||||||    
T  18637281 gaattgattccacttgaagctaagataagtagcttttgattctagaattgattt 18637334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 38587084 - 38587136
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||||||||||  |||| |||||||||||||| ||||| |||||||||    
T  38587084 gaattgattttacttgagcctaagatttgtagcttttg-ttttataattgattt 38587136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 370800 - 370768
Alignment:
Q  254 aaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||||||||||||||||| |||||||||    
T  370800 aaaatttgtagcttttgattttaaaattgattt 370768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 6951392 - 6951340
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||| ||  ||||||||||||||||| || |||||||||    
T  6951392 aattgattctacttgaagttaggatttgtagcttttgattctataattgattt 6951340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 11648080 - 11648132
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||| |||||||  |||||||| || |||||||||    
T  11648080 aattgattctacttgaagctaagatttgtacattttgattataaaattgattt 11648132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 3482043 - 3482096
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| ||||||||| ||| ||||||||| ||||||||||||||||||||    
T  3482043 gaattgattatacttgaagttaagatttgtagcctttgattttagaattgattt 3482096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 12126163 - 12126212
Alignment:
Q  237 tgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  12126163 tgattttatttgaagctgaaatttgcagcttttgattttagaattgattt 12126212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 30927040 - 30927093
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| ||||||||||||| ||| ||||||||||||| ||||||||||||    
T  30927040 gaattgattatacttgaagctaagattcgtagcttttgattatagaattgattt 30927093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 765474 - 765422
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgatt 285  Q
    ||||||||| ||||||||||||  ||||||||||||||||| |||||||||||    
T  765474 gaattgattctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 4910906 - 4910958
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||  ||||||||||||||||| ||||||||||||    
T  4910906 aattgattctacttgaagctatgatttgtagcttttgattctagaattgattt 4910958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 6896084 - 6895985
Alignment:
Q  187 ctggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||| |||| | |||||| ||||| |||| |||||| ||||||  |||||||| ||| ||||| ||  ||||||||||||||||| ||||||| ||||    
T  6896084 ctggagatgtagaattgattatgacatgtttggttgttgtcgagtacaattgattctacctgaagttaggatttgtagcttttgattctagaatttattt 6895985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 33136647 - 33136577
Alignment:
Q  175 ccaaaattaatcctggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttac 245  Q
    ||||||||||| || |||||||||| |||||||||||| |||| |||| | ||||||  ||||||||||||    
T  33136647 ccaaaattaattctagaggtgtataattgattttgacatgtttggttgctctcgagtataattgattttac 33136577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 434324 - 434272
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| || |||||| |||||||  |||||||||||||||||||||||||    
T  434324 aattgattatatttgaagttaaaattaatagcttttgattttagaattgattt 434272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 31305924 - 31305882
Alignment:
Q  244 acttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||    
T  31305924 acttgaagctaaaaattggagcttttgattctagaattgattt 31305882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 1485234 - 1485181
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| |||||||| ||| || ||| ||||||||||| ||||||||||||    
T  1485234 gaattgattctacttgaatctagaaattggagcttttgattctagaattgattt 1485181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 16540105 - 16540154
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattga 283  Q
    |||||||| ||||||||||||  ||||||||||||||||| | |||||||    
T  16540105 aattgattctacttgaagctaggatttgtagcttttgattattgaattga 16540154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 2234513 - 2234565
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||  ||||||||||||||  || ||||||||||| ||||||||||||    
T  2234513 aattgattcaacttgaagctaaaaactgaagcttttgattctagaattgattt 2234565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 7280488 - 7280528
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattt 274  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  7280488 aattgattttacttaaaactaaaacttgtagcttttgattt 7280528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 28287456 - 28287371
Alignment:
Q  201 ttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||| ||||||| || |||| | | |||| |||||| || |||||||||| |  ||||||||||||||||||||||||||||||    
T  28287456 ttgattctgacaaggttggttgcttttgagtagaattggttctacttgaagcaaggatttgtagcttttgattttagaattgattt 28287371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 286
Target Start/End: Original strand, 11049202 - 11049300
Alignment:
Q  188 tggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||| | ||||||  |||| ||||  ||| | |||||| |||| |||| ||||||||||||  ||||||||||||||||| || |||||||||    
T  11049202 tggaggtgtagaattgattcagacatgtttcattgctttcgagtagaatcgattctacttgaagctaggatttgtagcttttgattctaaaattgattt 11049300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 28083975 - 28083923
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| |||||||||||| |||||||||||||||||| || |||| ||||    
T  28083975 aattgattctacttgaagctagaatttgtagcttttgattctataattaattt 28083923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 48549099 - 48549047
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| |||||||||||| || ||||||||| ||||| ||||||||||||    
T  48549099 aattgattctacttgaagctagaaattgtagcttctgattctagaattgattt 48549047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 3016160 - 3016210
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgat 284  Q
    |||||||| ||||||||  || |||||||||||||||||| ||||||||||    
T  3016160 aattgattctacttgaacttagaatttgtagcttttgattctagaattgat 3016210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 7524118 - 7524163
Alignment:
Q  241 tttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||||| ||  ||||||||||||||||| ||||||||||||    
T  7524118 tttacttgaagttaggatttgtagcttttgattatagaattgattt 7524163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 47322057 - 47322004
Alignment:
Q  188 tggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgatt 241  Q
    |||||||||| | |||||||||||| |||| |||||| |||||| |||||||||    
T  47322057 tggaggtgtagaattgattttgacatgttttgttgttgtcgagtagaattgatt 47322004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 3416078 - 3416130
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||| ||| ||| |||||||| |||| ||||||||||||||||    
T  3416078 aattgattatacttaaagttaagatttgtagttttttattttagaattgattt 3416130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 3515820 - 3515868
Alignment:
Q  238 gattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||| |||||||||||| || ||||||||||| ||| ||||||||||||    
T  3515820 gattctacttgaagctagaaattgtagcttttcattctagaattgattt 3515868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 32111991 - 32112045
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagctttt-gattttagaattgattt 286  Q
    ||||||||| |||||||||||| |||||||||||||| | |||||||||||||||    
T  32111991 gaattgattctacttgaagctacaatttgtagcttttggcttttagaattgattt 32112045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 40147938 - 40147885
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| ||||| |||||| |||||| ||||||||||| ||||||||||||    
T  40147938 gaattgattctacttcaagctagaatttggagcttttgattctagaattgattt 40147885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 30948117 - 30948075
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgatttta 276  Q
    |||||||| || ||||||||| |||||||||||||||||||||    
T  30948117 aattgattatatttgaagctagaatttgtagcttttgatttta 30948075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 7742230 - 7742193
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttga 271  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  7742230 aattaattttacttgaaactaaaatttgtagcttttga 7742193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 37335122 - 37335069
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||||||| |||| || || | ||||||||||||| ||||||||||||    
T  37335122 gaattgattttactagaagttagaaatcgtagcttttgattctagaattgattt 37335069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 41115450 - 41115413
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttg 270  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  41115450 gaattgattctacttgaagctagaatttgtagcttttg 41115413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 54596819 - 54596868
Alignment:
Q  237 tgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| |||||| || |||||||| ||||| ||||||||||||||||    
T  54596819 tgattttatttgaagttagaatttgtaacttttaattttagaattgattt 54596868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 35058065 - 35058117
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||| ||||||||  ||||||||||||| ||| ||||||||||||    
T  35058065 aattgattctacatgaagctaggatttgtagcttttaattatagaattgattt 35058117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 40339223 - 40339259
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagctttt 269  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  40339223 gaattgattctacttgaagctacaatttgtagctttt 40339259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 31824 - 31876
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||  ||||||||||||||||| | ||||||||||    
T  31824 aattgattatacttgaagctaggatttgtagcttttgattattgaattgattt 31876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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