View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11617_high_17 (Length: 279)
Name: NF11617_high_17
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_high_17 |
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Alignment Details
Target: chr1 (Bit Score: 229; Significance: 1e-126; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 1 - 268
Target Start/End: Original strand, 18804439 - 18804715
Alignment:
| Q |
1 |
taaattaaacctttattttttatcaaaataaatctaagttgtcacttgtcacgctaataacttattaatgatgtaaaatagtcattaataataaaattgg |
100 |
Q |
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| T |
18804439 |
taaattaaacctttattttttatcaaaataaatctaagttgtcacttgtcacgctaataacttattaatgatgtaaaatagtcattaataataaaattgg |
18804538 |
T |
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| Q |
101 |
tttcaagtaaaacaccggttattagaagataagtaaaatttgaccaaaatttttgtcactcaagaccggtattgatgttca---------cttaagacta |
191 |
Q |
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| T |
18804539 |
tttcaagtaaaacaccggttattagaagataagtaaaatttgatcaaaatttttgtcactcaagactgatattgatgatcaattaagacgcttaagacta |
18804638 |
T |
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| Q |
192 |
gagagatcacttaaaacaaagatactccgccttaaagatactattcatgtcacattaagcctcataagaaccattca |
268 |
Q |
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| T |
18804639 |
gagagatcacttaaaacaaagatactccgccttaaagatactattcatgtcacattaagcctcataagaaccattca |
18804715 |
T |
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