View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11617_high_2 (Length: 594)
Name: NF11617_high_2
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_high_2 |
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Alignment Details
Target: chr4 (Bit Score: 429; Significance: 0; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 429; E-Value: 0
Query Start/End: Original strand, 18 - 585
Target Start/End: Complemental strand, 9943804 - 9943236
Alignment:
| Q |
18 |
aaactttgtaaactttttcttaactttctcatcttcagaagatcatgaactgtctacatcttctaaatctccattctcgtcatcaaaatctgacagagtt |
117 |
Q |
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|||||||||||||||||||||| |||||| |||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||| |
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| T |
9943804 |
aaactttgtaaactttttcttacctttctaatcttcagaagatcatgaactgtctacatcttttgaatctccattctcgtcatcaaaatctatcagagtt |
9943705 |
T |
|
| Q |
118 |
gttgcattagggttccttgaagcatcaaccgctaccagatcctgaacattaccacttgaagcatcaacatgtgttggattgattagctggtcaggcaaca |
217 |
Q |
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||||||| |||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| |
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| T |
9943704 |
gttgcatcagggttccttgaagcatcaaccagtaccagatcctgaacattaccacttgaagcatcaacatgtgttggattgattagctggtaaatcaaca |
9943605 |
T |
|
| Q |
218 |
cagttgtccagtcaaattcttcatcatagtcattgtcattaagagatactccatcaatacttccattctcagcatgctcaccttcct-agctatatactc |
316 |
Q |
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|| ||||||||||||||||||||||||||||| |||||||||||||||| ||||||| ||||||||||||||||||||| |||||| | |||||||||| |
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| T |
9943604 |
catttgtccagtcaaattcttcatcatagtcactgtcattaagagataccccatcaacacttccattctcagcatgctctccttccccatctatatactc |
9943505 |
T |
|
| Q |
317 |
aggatctgtttcactatcaggttcttcaccaaaatagaaaaattcatcatctttatatctgttgtcaagctcttccaaacttagatgttccaagtaaaaa |
416 |
Q |
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| ||||||||||||||||||| |||||||||||||||||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |
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| T |
9943504 |
atgatctgtttcactatcaggctcttcaccaaaatagaaaaattattcatcttcatatatgttgtcaagctcttccaaacttagatgttccaagtaaaaa |
9943405 |
T |
|
| Q |
417 |
ttgacattttcttgtgacttgaactcatttataaactttaccatcaattttgattgctctaagaccatctttcacttctcccccagttatagcatatcag |
516 |
Q |
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||||||||||| ||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || ||||||| |
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| T |
9943404 |
ttgacattttcctgtgacttgaactcatttaaaaactttaccatcagttttgattgctctaagaccatctttcacttctcccccagttacaggatatcag |
9943305 |
T |
|
| Q |
517 |
attgtatattcccctttcacacctacttcccttaccaatttctccaaatcaattaagttgacttcatct |
585 |
Q |
| |
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| T |
9943304 |
actgtatattcccctttcacacccacttcccttaccaatttctcgaaatcaattaagttgacttcatct |
9943236 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 19694556 - 19694470
Alignment:
| Q |
193 |
ggattgattagctggtcaggcaacacagttgtccagtcaaattcttcatcatagtcattgtcattaagagatactccatcaatactt |
279 |
Q |
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| T |
19694556 |
ggatttattagttggtcaggcaacacatctgtccagtcaaagccctcatcatagtcactatcatttagagacaccccatcaacactt |
19694470 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 193 - 279
Target Start/End: Complemental strand, 19705141 - 19705055
Alignment:
| Q |
193 |
ggattgattagctggtcaggcaacacagttgtccagtcaaattcttcatcatagtcattgtcattaagagatactccatcaatactt |
279 |
Q |
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| T |
19705141 |
ggatttattagttggtcaggcaacacatctgtccagtcaaagccctcatcatagtcactatcatttagagacaccccatcaacactt |
19705055 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 39; Significance: 0.0000000000009; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 39; E-Value: 0.0000000000009
Query Start/End: Original strand, 193 - 279
Target Start/End: Original strand, 29922275 - 29922361
Alignment:
| Q |
193 |
ggattgattagctggtcaggcaacacagttgtccagtcaaattcttcatcatagtcattgtcattaagagatactccatcaatactt |
279 |
Q |
| |
|
|||||||| ||||||||| |||||||||||||||||||||| || |||| ||||| | | ||||| ||||| || ||||||| |||| |
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| T |
29922275 |
ggattgatcagctggtcaagcaacacagttgtccagtcaaaatcctcattatagttactatcattgagagaaaccccatcaacactt |
29922361 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000009
Query Start/End: Original strand, 193 - 274
Target Start/End: Original strand, 3344073 - 3344154
Alignment:
| Q |
193 |
ggattgattagctggtcaggcaacacagttgtccagtcaaattcttcatcatagtcattgtcattaagagatactccatcaa |
274 |
Q |
| |
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||||| ||||| ||||||||||||||| |||||||||||| | |||||||||||| | ||||| ||||| || ||||||| |
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| T |
3344073 |
ggatttattagttggtcaggcaacacatctgtccagtcaaagccctcatcatagtcactatcattcagagacaccccatcaa |
3344154 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 83 - 124
Target Start/End: Original strand, 29922171 - 29922212
Alignment:
| Q |
83 |
aatctccattctcgtcatcaaaatctgacagagttgttgcat |
124 |
Q |
| |
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| T |
29922171 |
aatctccattctcatcatcaaaatttgaaagagttgttgcat |
29922212 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 33; Significance: 0.000000003; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 194 - 274
Target Start/End: Complemental strand, 17098556 - 17098476
Alignment:
| Q |
194 |
gattgattagctggtcaggcaacacagttgtccagtcaaattcttcatcatagtcattgtcattaagagatactccatcaa |
274 |
Q |
| |
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|||| ||||| ||||||||||||||| |||||||||||| | |||||||||||| | ||||| ||||| || ||||||| |
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|
| T |
17098556 |
gatttattagttggtcaggcaacacatctgtccagtcaaagccctcatcatagtcactatcattcagagacaccccatcaa |
17098476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 31; Significance: 0.00000005; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 31; E-Value: 0.00000005
Query Start/End: Original strand, 210 - 288
Target Start/End: Complemental strand, 5002676 - 5002598
Alignment:
| Q |
210 |
aggcaacacagttgtccagtcaaattcttcatcatagtcattgtcattaagagatactccatcaatacttccattctca |
288 |
Q |
| |
|
|||||| ||||| |||||||| ||||||||||| ||||| |||||| || |||||| ||||| | |||||||| |||| |
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| T |
5002676 |
aggcaaaacagtggtccagtcccattcttcatcaaagtcactgtcatcaacagataccccatctacacttccatcctca |
5002598 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 70 - 138
Target Start/End: Original strand, 11333169 - 11333237
Alignment:
| Q |
70 |
tctacatcttctaaatctccattctcgtcatcaaaatctgacagagttgttgcattagggttccttgaa |
138 |
Q |
| |
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|||| ||||||| |||||||||||| |||||||||||| ||||||||||||| ||| ||| ||||| |
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| T |
11333169 |
tctaaatcttctgaatctccattcttatcatcaaaatcttcaagagttgttgcatcaggattctttgaa |
11333237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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