View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11617_high_24 (Length: 239)
Name: NF11617_high_24
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_high_24 |
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Alignment Details
Target: chr1 (Bit Score: 223; Significance: 1e-123; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 223
Target Start/End: Original strand, 39336270 - 39336492
Alignment:
| Q |
1 |
ttcactaaccgacagagacattctgtctaccttatgttttggtgccataccccaattcattttgaagttactatcacaatgatttgttatttatttatta |
100 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39336270 |
ttcactaaccgacagagacattctgtctaccttatgttttggtgccataccccaattcattttgaagttactatcacaatgatttgttatttatttatta |
39336369 |
T |
|
| Q |
101 |
aagacattgtaaaattgtgaatgctatctttgacgttttcaacctttttaactaagatagcttaagccaacattaattgaatatgttgctatttatctga |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39336370 |
aagacattgtaaaattgtgaatgctatctttgacgttttcaacctttttaactaagatagcttaagccaacattaattgaatatgttgctatttatctga |
39336469 |
T |
|
| Q |
201 |
aagtctattcgtaaccaactttc |
223 |
Q |
| |
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||||||||||||||||||||||| |
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|
| T |
39336470 |
aagtctattcgtaaccaactttc |
39336492 |
T |
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