View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11617_high_25 (Length: 238)
Name: NF11617_high_25
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_high_25 |
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Alignment Details
Target: chr1 (Bit Score: 207; Significance: 1e-113; HSPs: 4)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 18804240 - 18804018
Alignment:
| Q |
1 |
catcaacattatgttagcgatatcttctcctatgttttcaacaattggatggccctttgaagagcctttaagccataaccagcatcagaatcaattattt |
100 |
Q |
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| T |
18804240 |
catcatcattatgttagcgatatctcctcctatgttttcaacaattggatggccctttgaagagtctttaagtcataaccagcatcagaatcaattattt |
18804141 |
T |
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| Q |
101 |
aattttcatgatcaagttgaggcagaaattaattcaacagatccctcacaatccacaagcagtgaccttagcatggtcaagaagcttgttcataatgcta |
200 |
Q |
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| T |
18804140 |
aattttcatgatcaagttgaggcagaaattaattcaacagatccctcacaatccacaagcagtgaccttagcatggtcaagaagcttgttcataatgcta |
18804041 |
T |
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| Q |
201 |
gcgaacgcgatcgccgcaagaag |
223 |
Q |
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||||||||||||||||||||||| |
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| T |
18804040 |
gcgaacgcgatcgccgcaagaag |
18804018 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 203; E-Value: 1e-111
Query Start/End: Original strand, 1 - 223
Target Start/End: Complemental strand, 18783229 - 18783007
Alignment:
| Q |
1 |
catcaacattatgttagcgatatcttctcctatgttttcaacaattggatggccctttgaagagcctttaagccataaccagcatcagaatcaattattt |
100 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||||||||||||||||| |
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| T |
18783229 |
catcaacattatgttagcgatatctcctcctatgttttcaacaattggatggccctttgaagagtctttaagtcataaccagcatcagaatcaattattt |
18783130 |
T |
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| Q |
101 |
aattttcatgatcaagttgaggcagaaattaattcaacagatccctcacaatccacaagcagtgaccttagcatggtcaagaagcttgttcataatgcta |
200 |
Q |
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| T |
18783129 |
aattttcatgatcaagttgaggcagaaattaattcaacagatccctcacaatccacaagcagtgaccttagcatggtcaagaagcttgttcataatgcca |
18783030 |
T |
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| Q |
201 |
gcgaacgcgatcgccgcaagaag |
223 |
Q |
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| T |
18783029 |
gtgaacgcgatcgccgcaagaag |
18783007 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 134; E-Value: 7e-70
Query Start/End: Original strand, 90 - 223
Target Start/End: Complemental strand, 18792596 - 18792463
Alignment:
| Q |
90 |
atcaattatttaattttcatgatcaagttgaggcagaaattaattcaacagatccctcacaatccacaagcagtgaccttagcatggtcaagaagcttgt |
189 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
18792596 |
atcaattatttaattttcatgatcaagttgaggcagaaattaattcaacagatccctcacaatccacaagcagtgaccttagcatggtcaagaagcttgt |
18792497 |
T |
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| Q |
190 |
tcataatgctagcgaacgcgatcgccgcaagaag |
223 |
Q |
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| T |
18792496 |
tcataatgctagcgaacgcgatcgccgcaagaag |
18792463 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 1 - 91
Target Start/End: Complemental strand, 18792709 - 18792619
Alignment:
| Q |
1 |
catcaacattatgttagcgatatcttctcctatgttttcaacaattggatggccctttgaagagcctttaagccataaccagcatcagaat |
91 |
Q |
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||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
18792709 |
catcaacattatgttagcgatatctcctcctatgttttcaacaattggatggccctttgaggagcctttaagccataaccagcatcagaat |
18792619 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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