View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11617_high_27 (Length: 213)
Name: NF11617_high_27
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_high_27 |
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Alignment Details
Target: chr2 (Bit Score: 184; Significance: 1e-100; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 184; E-Value: 1e-100
Query Start/End: Original strand, 1 - 200
Target Start/End: Complemental strand, 3087620 - 3087421
Alignment:
| Q |
1 |
atttgaccataaatagttatgtttcgcttttgattttagaattgattttaggttagtgatacgtgtgtaaacctttcaatctagtcatatctatctaatg |
100 |
Q |
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| T |
3087620 |
atttgaccataaatagttatgtttcgcttttgattttagaattgattttaggttagtgatacgtgtctaaacctttcaatctagccatatctatctaatg |
3087521 |
T |
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| Q |
101 |
tttatggcataaccagacacactatgtttgttagctgagggctagggtttgaactttacctgtgcaattagacatgtcatctcatgaccctctctgctcc |
200 |
Q |
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| T |
3087520 |
tttatcgcataaccagacacactatgtttgttagctgagggctagggtttgaactttacctgtgcaattagacatgtcatctcatgaccctctttgctcc |
3087421 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 57; E-Value: 6e-24
Query Start/End: Original strand, 1 - 65
Target Start/End: Complemental strand, 3087685 - 3087621
Alignment:
| Q |
1 |
atttgaccataaatagttatgtttcgcttttgattttagaattgattttaggttagtgatacgtg |
65 |
Q |
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||||||| |||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
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| T |
3087685 |
atttgactataaatagttatgtttcgctttggattttagaattgattttaggttagtgatacgtg |
3087621 |
T |
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