View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11617_high_4 (Length: 484)
Name: NF11617_high_4
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_high_4 |
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Alignment Details
Target: chr2 (Bit Score: 332; Significance: 0; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 66 - 470
Target Start/End: Original strand, 1491244 - 1491639
Alignment:
| Q |
66 |
attatgacgttcacatataaatcttctcataaatatttgaacaaggggatgctaatttagttaattgatccaagtcaaccattatatttgctctctacga |
165 |
Q |
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| T |
1491244 |
attatgacgttcacatataaatcttctcataaatatttgaacaaagggatgttaatttagttaattgatccaagtcaaccattatatttgctctctatga |
1491343 |
T |
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| Q |
166 |
tccttggccttccattgttgtgttggctcggagacattattttccttgatcctctccacatttagtctcaactattaaaagggactaacggagggtgaca |
265 |
Q |
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| T |
1491344 |
tccttggccttccattgttgtgttggctcggagacattattttcctcgatcctctccccatttagtctcaactattaaaagggactaacggagggtgaca |
1491443 |
T |
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| Q |
266 |
tgacactgatgttgctaattaagttcatgttccacaatttatgtgtcatttagtctggttaaatcgcatttagctaaatagaagaatagaattcccaaat |
365 |
Q |
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| T |
1491444 |
tgacactgatgttgc----taagttcatgttccacaatttatgtgtcatttagtctggttaaatcgcatttagctaaatagaagaatataattcccaaat |
1491539 |
T |
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| Q |
366 |
ttcttggttgttcttatgttgaaggtggatcaaaaccatggcctcaaattaaatatgagatttcagcattgctatgtctatggcttagtggtgatatgtt |
465 |
Q |
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| T |
1491540 |
ttcttcgtcgttcttatgttgaaggtggatctaaaccatggcctc-----aaatatgagatttcagcattgctatgtctatggcttagtggtgatatgtt |
1491634 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 8e-22
Query Start/End: Original strand, 12 - 69
Target Start/End: Original strand, 1490055 - 1490112
Alignment:
| Q |
12 |
gagaagaaaaacaaaaacaaacttgccaccctattgtgtgtaaatgaattgataatta |
69 |
Q |
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| T |
1490055 |
gagaagaaaaacaaaaacaaacttgccaccctattgtgtggaaatgaattgataatta |
1490112 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 339 - 371
Target Start/End: Complemental strand, 1491684 - 1491652
Alignment:
| Q |
339 |
ctaaatagaagaatagaattcccaaatttcttg |
371 |
Q |
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| T |
1491684 |
ctaaatagaagaatagaatttccaaatttcttg |
1491652 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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