View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11617_high_5 (Length: 463)
Name: NF11617_high_5
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_high_5 |
 | |
|
Alignment Details
Target: chr2 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 2 - 449
Target Start/End: Original strand, 2017064 - 2017511
Alignment:
| Q |
2 |
caaaggacactttctcgaacaaatgaccttgcggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaacctgtt |
101 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017064 |
caaaggacactttctcgaacaaatgaccttgcggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaacctgtt |
2017163 |
T |
|
| Q |
102 |
gcacaaagccaaacatcccgtcgtgtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaacttgtttcgt |
201 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
2017164 |
gcacaaagccaaacatcccgtggtgtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaacaaacttgtttcgt |
2017263 |
T |
|
| Q |
202 |
gttgatgagacgggaagatgtgtcattctgataccccaaaatgattggttcacctgtatgctcttttcgtcgtagcaatcgctggctactggccatgcaa |
301 |
Q |
| |
|
|||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017264 |
gttgatgagacgggaaaatgtgtcattctgataccccaaaatgattggttcacctgtatgctcttttcgtcgtagcaatcgctggctactggccatgcaa |
2017363 |
T |
|
| Q |
302 |
cacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatgtgttgaggttnnnnnnnnnnnnnnnnntgctta |
401 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||| ||||| |
|
|
| T |
2017364 |
cacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtatatgggttgaggttgaagaagaagaagaagatgcttt |
2017463 |
T |
|
| Q |
402 |
ggtgcaatttatgagaaaagtgttgtccaaggaacaatccttggtggt |
449 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
2017464 |
ggtgcaatttatgagaaaagtgttgtccaaggaacaatccttggtggt |
2017511 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 72; Significance: 1e-32; HSPs: 7)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 26 - 345
Target Start/End: Complemental strand, 40566586 - 40566267
Alignment:
| Q |
26 |
gaccttgcggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaacctgttgcacaaagccaaacatcccgtcgt |
125 |
Q |
| |
|
||||||| ||||||||||||| ||||||||||| || |||||||||| | |||||| ||||||| || ||||||||| ||||||| |||||| || || |
|
|
| T |
40566586 |
gaccttggggtattgaaatctcgcaacaaccagtacctgagcaagattgactggccataatatcatcaagcctgttgcataaagccacacatcctgtggt |
40566487 |
T |
|
| Q |
126 |
gtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaacttgtttcgtgttgatgagacgggaagatgtgtc |
225 |
Q |
| |
|
|||||||||||||||| |||||| || | |||| | ||||||||||||||||||| || ||||||||||| |||| |||| | || ||||||| |
|
|
| T |
40566486 |
gtagttgtttcccccagaatcaatcgccgagagtgctccaatcgtgtcacagccaactgctgtcaacttgtttcgagttggcgagatgtaaaaatgtgtc |
40566387 |
T |
|
| Q |
226 |
attctgataccccaaaatgattggttcacctgtatgctcttttcgtcgtagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgaga |
325 |
Q |
| |
|
|| | ||| ||| | | ||||| | | ||| |||||| ||||||||||||||||||||||||||||||| ||| |||||||| || |||| |
|
|
| T |
40566386 |
atgttcatatcccgcagcgtttggtatatgaatctgcccttttctgcgtagcaatcgctggctactggccatgcaacgtgcaattcaccattgagtgaga |
40566287 |
T |
|
| Q |
326 |
tgtttaggacagtttgatta |
345 |
Q |
| |
|
| ||||||||| |||||||| |
|
|
| T |
40566286 |
tatttaggacattttgatta |
40566267 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 34 - 223
Target Start/End: Complemental strand, 40595958 - 40595769
Alignment:
| Q |
34 |
ggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaacctgttgcacaaagccaaacatcccgtcgtgtagttgt |
133 |
Q |
| |
|
||||||||||||| ||||||||| | |||||| ||||||||||||||||| |||||| ||| |||||||||||| |||| |||| | || ||||| ||| |
|
|
| T |
40595958 |
ggtattgaaatctcacaacaacctgggccggaacaagattcattggccacaatatcactaagcctgttgcacaaggccacacatgcagtggtgtatgtgt |
40595859 |
T |
|
| Q |
134 |
ttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaacttgtttcgtgttgatgagacgggaagatgtg |
223 |
Q |
| |
|
|||| | |||||| |||| |||||| | | || |||||||| ||||| || | ||||||||| | |||| |||||| ||| ||||| |
|
|
| T |
40595858 |
ttcctttagaatcaattgcttcgagtagtcccattgtgtcacatccaactgctatcaacttgttttgagttggcgagacgtgaaaatgtg |
40595769 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 274 - 378
Target Start/End: Complemental strand, 40571025 - 40570921
Alignment:
| Q |
274 |
tagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatgtgttg |
373 |
Q |
| |
|
|||||||| || ||||||||||||||| ||||||||||||| || || ||||||||||| ||| |||||||||| ||||||| ||| |||| | ||||| |
|
|
| T |
40571025 |
tagcaatcacttgctactggccatgcagcacgcagttcaccgtcgagtgagatgtttagaacactttgattagtctgtggcaagaatggtacgtctgttg |
40570926 |
T |
|
| Q |
374 |
aggtt |
378 |
Q |
| |
|
||||| |
|
|
| T |
40570925 |
aggtt |
40570921 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 274 - 378
Target Start/End: Complemental strand, 40577448 - 40577344
Alignment:
| Q |
274 |
tagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatgtgttg |
373 |
Q |
| |
|
||||||| ||||||||||||||||||||| | |||||||||| ||| ||||||||||| ||| |||||||||| ||||||| ||| |||| | ||||| |
|
|
| T |
40577448 |
tagcaatagctggctactggccatgcaacgtgaagttcaccattaagtgagatgtttagaacactttgattagtctgtggcaagaatggtacctctgttg |
40577349 |
T |
|
| Q |
374 |
aggtt |
378 |
Q |
| |
|
||||| |
|
|
| T |
40577348 |
aggtt |
40577344 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 26 - 200
Target Start/End: Complemental strand, 40589562 - 40589388
Alignment:
| Q |
26 |
gaccttgcggtattgaaatctgacaacaaccagtgccggagcaagattcattggccacgatatcattaaacctgttgcacaaagccaaacatcccgtcgt |
125 |
Q |
| |
|
||||||| |||| |||||||| |||||||||| || || ||||| |||||||| |||| |||| |||||||||| ||||||||||||| | || |
|
|
| T |
40589562 |
gaccttggggtaccgaaatctggcaacaaccaggaccagaacaagactcattggcaacgagatcagcgtgcctgttgcaccaagccaaacatccagaggt |
40589463 |
T |
|
| Q |
126 |
gtagttgtttcccccaaaatcaaatgctgcgagtattgcaatcgtgtcacagccaacggcaaaaaacttgtttcg |
200 |
Q |
| |
|
|||||||||||| || |||||| | || |||||||| || || ||||||||||| || | ||||||||||| |
|
|
| T |
40589462 |
gtagttgtttccttcagaatcaattactccgagtattccagatgtatcacagccaactgctaccaacttgtttcg |
40589388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 274 - 347
Target Start/End: Complemental strand, 40595727 - 40595654
Alignment:
| Q |
274 |
tagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagt |
347 |
Q |
| |
|
||||||| ||||||||||||||||||||| |||||||||||| ||| || || |||| |||| ||||||||| |
|
|
| T |
40595727 |
tagcaatgtctggctactggccatgcaacatgcagttcaccattaagtgatatatttaagacacgttgattagt |
40595654 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 283 - 335
Target Start/End: Complemental strand, 40600359 - 40600307
Alignment:
| Q |
283 |
ctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggac |
335 |
Q |
| |
|
||||||||||||||||| ||||||| |||||||| || ||||| |||||||| |
|
|
| T |
40600359 |
ctggctactggccatgcgacacgcaattcaccattgagtgagatatttaggac |
40600307 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 46; Significance: 5e-17; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 169 - 378
Target Start/End: Complemental strand, 8490797 - 8490588
Alignment:
| Q |
169 |
gtgtcacagccaacggcaaaaaacttgtttcgtgttgatgagacgggaagatgtgtcattctgataccccaaaatgattggttcacctgtatgctctttt |
268 |
Q |
| |
|
|||||||| ||||| || | |||||||||| |||| ||||| ||||||||||||| |||| || | ||| |||||||||| || | | ||||| |
|
|
| T |
8490797 |
gtgtcacaaccaactgctatcaacttgtttccggttggtgagatttgaagatgtgtcatgttgatgccaggatatgtttggttcaccagtttaccctttt |
8490698 |
T |
|
| Q |
269 |
cgtcgtagcaatcgctggctactggccatgcaacacgcagttcaccatcaagcgagatgtttaggacagtttgattagtatgtggcaggaaaggtaaatg |
368 |
Q |
| |
|
| | |||||||| ||| ||| ||||||||||||| ||||||||||||| || ||||||||||| ||| |||||||| | ||||||| ||| |||| | |
|
|
| T |
8490697 |
cagcatagcaatcactgcctattggccatgcaacatgcagttcaccatcgagtgagatgtttagaacactttgattactctgtggcaagaatggtacgtc |
8490598 |
T |
|
| Q |
369 |
tgttgaggtt |
378 |
Q |
| |
|
|||||||||| |
|
|
| T |
8490597 |
tgttgaggtt |
8490588 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University