View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11617_high_6 (Length: 426)
Name: NF11617_high_6
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_high_6 |
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Alignment Details
Target: chr8 (Bit Score: 355; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 355; E-Value: 0
Query Start/End: Original strand, 13 - 412
Target Start/End: Complemental strand, 27310861 - 27310462
Alignment:
| Q |
13 |
tcaaaaccaacacatcattttaaagatttgagttctttaatgtttcannnnnnnnactgatagcaaccccttgnnnnnnncttcttccagtcatcagcat |
112 |
Q |
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| T |
27310861 |
tcaaaaccaacacatcattttaaagatttgagttctttaatgtttcattttttttactgatagcaaccccttgtttttttcttcttccagtcatcagcat |
27310762 |
T |
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| Q |
113 |
tggagataagtgagataatgtaccaaaatgtaagtgggactacaaatagtgctaaggccattaaatttgactgcagtgacactgttccatgcagcaattt |
212 |
Q |
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| T |
27310761 |
tggagataagtgagataatgtaccaaaatgtaagtgggactacaaatagtgctaaggccattaaatttgactgcagtgacactgttccatgcagcaattt |
27310662 |
T |
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| Q |
213 |
agtccttagcaatgttgatttggagaaacaagatggcacagttgaaacatattgtcattcagctcaaggatttggatatggtgtggttcatccttcagct |
312 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27310661 |
agtccttagcaatgttgatttggagaaacaagatggcacagttgaaacatattgtcattcagctcaaggatttggatatggtgtggttcatccttcagct |
27310562 |
T |
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| Q |
313 |
gaatgccttaattccagtgataaaacttctcaagatgatgaatctcaatctattatttctgaagatgattatacccgtcacaccgaactatagttaaatt |
412 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27310561 |
gaatgccttaattccagtgataaaacttctcaagatgatgaatctcaatctattatttctgaagatgattatacccgtcacaccgaactatagttaaatt |
27310462 |
T |
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