View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11617_high_8 (Length: 404)
Name: NF11617_high_8
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_high_8 |
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Alignment Details
Target: chr2 (Bit Score: 382; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 1 - 386
Target Start/End: Original strand, 3087631 - 3088016
Alignment:
| Q |
1 |
taacctaaaatcaattctaaaatccaaagcgaaacataactatttatagtcaaatcacgtttcagtaacctaaaaacaattgacaattctaagaaataca |
100 |
Q |
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| T |
3087631 |
taacctaaaatcaattctaaaatccaaagcgaaacataactatttatagtcaaatcacgtttcagtaacctaaaaacaattgacaattctaagaaataca |
3087730 |
T |
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| Q |
101 |
aatgtgaaccaaacatatacatagctaatgtatcaaatgattgtcaagctggttatgaataagtataagggctaattcaaataactgttattcttgaagg |
200 |
Q |
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| T |
3087731 |
aatgtgaaccaaacatatacatagctaatgtatcaaatgattgtcatgctggttatgaataagtataagggctaattcaaataactgttattcttgaagg |
3087830 |
T |
|
| Q |
201 |
gtattattggaatcataattatgataaagtaattgatgatttctatatgattgataggcacttttaaagcctgaggcatcagaagcagttcatcatttgt |
300 |
Q |
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| T |
3087831 |
gtattattggaatcataattatgataaagtaattgatgatttctatatgattgataggcacttttaaagcctgaggcatcagaagcagttcatcatttgt |
3087930 |
T |
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| Q |
301 |
tacctccccatgtcaatggtaacttatcagccttatgtgtatggcctgatcaaattaggcactggtacaaatatagatggacaagt |
386 |
Q |
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| T |
3087931 |
tacctccccatgtcaatggtaacttatcagccttatgtgtatggcctgatcaaattaggcactggtacaaatatagatggacaagt |
3088016 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 1 - 81
Target Start/End: Original strand, 3087566 - 3087646
Alignment:
| Q |
1 |
taacctaaaatcaattctaaaatccaaagcgaaacataactatttatagtcaaatcacgtttcagtaacctaaaaacaatt |
81 |
Q |
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| T |
3087566 |
taacctaaaatcaattctaaaatcaaaagcgaaacataactatttatggtcaaatcacgtatcactaacctaaaatcaatt |
3087646 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 31; Significance: 0.00000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 8 - 74
Target Start/End: Complemental strand, 34922185 - 34922119
Alignment:
| Q |
8 |
aaatcaattctaaaatccaaagcgaaacataactatttatagtcaaatcacgtttcagtaacctaaa |
74 |
Q |
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| T |
34922185 |
aaatcaattccaaagtcggaagccaaacataacaatttatagtcaaatcaagtttaactaacctaaa |
34922119 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 27 - 59
Target Start/End: Complemental strand, 34898768 - 34898736
Alignment:
| Q |
27 |
aagcgaaacataactatttatagtcaaatcacg |
59 |
Q |
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| T |
34898768 |
aagcgaaacataacaatttatagtcaaatcacg |
34898736 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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