View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11617_high_9 (Length: 382)

Name: NF11617_high_9
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11617_high_9
NF11617_high_9
[»] chr4 (9 HSPs)
chr4 (1-367)||(9134639-9135003)
chr4 (1-70)||(8604609-8604678)
chr4 (1-70)||(32818357-32818426)
chr4 (1-70)||(35065092-35065161)
chr4 (1-115)||(21691160-21691268)
chr4 (1-35)||(37566243-37566277)
chr4 (1-39)||(45011903-45011941)
chr4 (11-71)||(16551996-16552054)
chr4 (1-70)||(20718646-20718715)
[»] chr2 (1 HSPs)
chr2 (1-124)||(33019095-33019212)
[»] chr1 (4 HSPs)
chr1 (2-138)||(30557534-30557661)
chr1 (2-62)||(47321902-47321962)
chr1 (1-70)||(7524142-7524211)
chr1 (1-69)||(11049279-11049347)
[»] chr6 (4 HSPs)
chr6 (3-124)||(3482077-3482192)
chr6 (1-138)||(4910937-4911067)
chr6 (1-37)||(12126191-12126227)
chr6 (1-37)||(434257-434293)
[»] chr7 (4 HSPs)
chr7 (2-70)||(35772288-35772356)
chr7 (101-138)||(39634149-39634186)
chr7 (1-66)||(42816459-42816524)
chr7 (1-70)||(45557394-45557463)
[»] chr5 (3 HSPs)
chr5 (1-140)||(42858137-42858270)
chr5 (1-40)||(28110455-28110494)
chr5 (111-163)||(38845591-38845643)
[»] chr8 (8 HSPs)
chr8 (76-123)||(44141000-44141047)
chr8 (1-70)||(32927921-32927990)
chr8 (1-45)||(13384666-13384710)
chr8 (1-39)||(40848046-40848084)
chr8 (101-138)||(28425469-28425506)
chr8 (1-37)||(6027069-6027105)
chr8 (2-66)||(16972055-16972119)
chr8 (2-66)||(32736492-32736556)
[»] scaffold0753 (1 HSPs)
scaffold0753 (240-282)||(5753-5795)
[»] chr3 (2 HSPs)
chr3 (1-70)||(31708226-31708295)
chr3 (1-45)||(4526161-4526205)


Alignment Details
Target: chr4 (Bit Score: 316; Significance: 1e-178; HSPs: 9)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 1 - 367
Target Start/End: Original strand, 9134639 - 9135003
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaattcctaacacaattcacttttagccagaac 100  Q
    |||||||||||||||||||||||||  ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  9134639 cttttgattttagaattgattttca--cacaaatttatagctcaatttgcttttaaatgaatgtatccaattccaaacacaattcacttttagccagaac 9134736  T
Q  101 cacttctaaccaaaatcaattctaacagaatcaattctccccttcacacaatcaaacacacgctaagtcattattttattatcatcatgatcctatcata 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9134737 cacttctaaccaaaatcaattctaacagaatcaattctccccttcacacaatcaaacacacgctaagtcattattttattatcatcatgatcctatcata 9134836  T
Q  201 atgtaaactattgatttnnnnnnnngttaatatgatagaaaaaagagaggataaaacctttaatatcacaagtagacctaggaggcaacacaagtagagg 300  Q
    |||||||||||||||||        |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  9134837 atgtaaactattgatttaaaaaaaagttaatatgatagaaaaaagagaggataaaacctttaatatcacaagtagacctaggaggcaacacaagtagagg 9134936  T
Q  301 gttaggggcaacacaaaacttctttggatttggagtattaacctgcaaatcaacaacaccatcaatt 367  Q
    |||||||| |||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||    
T  9134937 gttaggggtaacacaaaacgtctttggatttggagtattaacctggaaatcaacaacaccatcaatt 9135003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 8604678 - 8604609
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaa 70  Q
    |||| |||| ||||||||||||||| |||||||||||||| | |||   |||||| ||||||||||||||    
T  8604678 ctttcgattctagaattgattttcacacacaaatttatagttgaatgcacttttacatgaatgtatccaa 8604609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 32818426 - 32818357
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaa 70  Q
    ||||||||| |||||||||||||   |||||||||||||| |||| |  |||||| ||||||||||||||    
T  32818426 cttttgattctagaattgatttttgcacacaaatttatagttcaactaacttttacatgaatgtatccaa 32818357  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 35065092 - 35065161
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaa 70  Q
    ||||||||| ||||||||||||| | ||||||||||||| ||| | |  |||||| ||||||||||||||    
T  35065092 cttttgattctagaattgatttttacacacaaatttatatctccactcacttttacatgaatgtatccaa 35065161  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 21691268 - 21691160
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaattcctaacacaattcacttttagccagaac 100  Q
    |||||| || ||||||||||||||| |||||||||||||| ||||    |||||| |||||| ||||||      ||||||| |||||| ||| |||||     
T  21691268 cttttggttgtagaattgattttcacacacaaatttatagttcaacacacttttacatgaatatatcca------aacacaaatcacttgtagtcagaat 21691175  T
Q  101 cacttctaaccaaaa 115  Q
    ||||| |||||||||    
T  21691174 cacttttaaccaaaa 21691160  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 35
Target Start/End: Complemental strand, 37566277 - 37566243
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatt 35  Q
    ||||||||||||||||||||||||| |||||||||    
T  37566277 cttttgattttagaattgattttcacacacaaatt 37566243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 45011903 - 45011941
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttata 39  Q
    ||||||||| ||||||||||||||| |||||||||||||    
T  45011903 cttttgattctagaattgattttcacacacaaatttata 45011941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 11 - 71
Target Start/End: Original strand, 16551996 - 16552054
Alignment:
Q  11 tagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaat 71  Q
    |||||||||||||||  ||||||||||||| |||| |  |||||| |||||||||||||||    
T  16551996 tagaattgattttca--cacaaatttatagttcaactcacttttacatgaatgtatccaat 16552054  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 20718646 - 20718715
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaa 70  Q
    ||||| ||| || ||||||||||  |||||||| |||||| |||| || ||||||||| |||||||||||    
T  20718646 cttttaattataaaattgatttttctacacaaaattatagttcaagttacttttaaataaatgtatccaa 20718715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 49; Significance: 6e-19; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 49; E-Value: 6e-19
Query Start/End: Original strand, 1 - 124
Target Start/End: Complemental strand, 33019212 - 33019095
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaattcctaacacaattcacttttagccagaac 100  Q
    |||||| |||||||||||||||||| ||| |||||||||| |||| |  |||||| ||||||| |||||      ||||||| |||||||||| |||||     
T  33019212 cttttggttttagaattgattttcacacataaatttatagttcaactcacttttacatgaatgcatcca------aacacaaatcacttttagtcagaat 33019119  T
Q  101 cacttctaaccaaaatcaattcta 124  Q
    ||||| ||||||||||||||||||    
T  33019118 cacttttaaccaaaatcaattcta 33019095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 47; Significance: 1e-17; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 2 - 138
Target Start/End: Original strand, 30557534 - 30557661
Alignment:
Q  2 ttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaattcctaacacaattcacttttagccagaacc 101  Q
    |||||||| |||||||||||||||  ||||||||||||| |||| |  |||||| |||||||||||||      ||||||| |||||| ||| ||||  |    
T  30557534 ttttgattctagaattgattttca--cacaaatttatagttcaactcacttttatatgaatgtatcca------aacacaaatcacttctagtcagagtc 30557625  T
Q  102 acttctaaccaaaatcaattctaacagaatcaattct 138  Q
    |||| ||||||||||||||||| ||||||||||||||    
T  30557626 acttttaaccaaaatcaattct-acagaatcaattct 30557661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 62
Target Start/End: Complemental strand, 47321962 - 47321902
Alignment:
Q  2 ttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaat 62  Q
    |||| ||| |||||||||||||||||||||||||||||| ||||||  |||||| ||||||    
T  47321962 ttttaattctagaattgattttcatacacaaatttatagttcaattcacttttacatgaat 47321902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 7524142 - 7524211
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaa 70  Q
    ||||||||| ||||||||||||| | |||||||||||||| |||| |  |||||| || ||||| |||||    
T  7524142 cttttgattatagaattgatttttacacacaaatttatagttcaactcacttttacataaatgtgtccaa 7524211  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 69
Target Start/End: Original strand, 11049279 - 11049347
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatcca 69  Q
    ||||||||| || |||||||||| | |||||||||||||| |||| |  ||||||  ||||||||||||    
T  11049279 cttttgattctaaaattgatttttacacacaaatttatagttcaagtcacttttacgtgaatgtatcca 11049347  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 3 - 124
Target Start/End: Original strand, 3482077 - 3482192
Alignment:
Q  3 tttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaattcctaacacaattcacttttagccagaacca 102  Q
    ||||||||||||||||||||||| |||||| ||||||| |||| || |||||| |||||||||| ||      ||||||| |||||||||   |||| ||    
T  3482077 tttgattttagaattgattttcacacacaagtttatagttcaacttacttttacatgaatgtattca------aacacaaatcacttttattgagaatca 3482170  T
Q  103 cttctaaccaaaatcaattcta 124  Q
     || ||||||||||||||||||    
T  3482171 tttttaaccaaaatcaattcta 3482192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 1 - 138
Target Start/End: Original strand, 4910937 - 4911067
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaattcctaacacaattcacttttagccagaac 100  Q
    ||||||||| ||||||||||||||| | |||||||||||| || | |  |||||| || ||||||||||      |||| || |||||||||| |||||     
T  4910937 cttttgattctagaattgattttcacatacaaatttatagttcgactcacttttacataaatgtatcca------aacataaatcacttttagtcagaat 4911030  T
Q  101 cacttctaaccaaaatcaattctaacagaatcaattct 138  Q
     |||| |||||||||| |||||| | ||||||||||||    
T  4911031 tacttttaaccaaaattaattct-agagaatcaattct 4911067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 37
Target Start/End: Original strand, 12126191 - 12126227
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaattta 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  12126191 cttttgattttagaattgattttcatacaaaaattta 12126227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 434293 - 434257
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaattta 37  Q
    ||||||||||||||||||||||| ||||| |||||||    
T  434293 cttttgattttagaattgatttttatacataaattta 434257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.000000000009; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 2 - 70
Target Start/End: Original strand, 35772288 - 35772356
Alignment:
Q  2 ttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaa 70  Q
    |||||||||||||||||||||||| | | |||||||||  ||||||| |||||| || |||||||||||    
T  35772288 ttttgattttagaattgattttcacaaataaatttataattcaatttacttttatataaatgtatccaa 35772356  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 39634186 - 39634149
Alignment:
Q  101 cacttctaaccaaaatcaattctaacagaatcaattct 138  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  39634186 cacttttaaccaaaatcaattctaacaaaatcaattct 39634149  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 66
Target Start/End: Complemental strand, 42816524 - 42816459
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtat 66  Q
    ||||| ||| ||||||||||||||| |||||||||||||  ||||||  ||| || ||||||||||    
T  42816524 cttttaattctagaattgattttcacacacaaatttataattcaattcacttctacatgaatgtat 42816459  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 45557394 - 45557463
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaa 70  Q
    ||||| ||| ||| ||||||||| | |||||||||| |||||||| |  |||||| ||||||||||||||    
T  45557394 cttttaattctaggattgatttttacacacaaatttgtagctcaactcacttttacatgaatgtatccaa 45557463  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 37; Significance: 0.000000000009; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 37; E-Value: 0.000000000009
Query Start/End: Original strand, 1 - 140
Target Start/End: Original strand, 42858137 - 42858270
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaattcctaacacaattcacttttagccagaac 100  Q
    ||||| ||| || |||||||||||| |||||||||||||| |||| |  |||||| |||||| ||| |||      |||||  |||||||||| |||||     
T  42858137 cttttaattctataattgattttcacacacaaatttatagttcaactcacttttacatgaatttattcaa------acacagatcacttttagtcagaat 42858230  T
Q  101 cacttctaaccaaaatcaattctaacagaatcaattctcc 140  Q
    || || |||||||||||||||||| || || |||||||||    
T  42858231 catttttaaccaaaatcaattctatcaaaaccaattctcc 42858270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 1 - 40
Target Start/End: Complemental strand, 28110494 - 28110455
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatag 40  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  28110494 cttttgattttagaattgattttcacacacaaatttatag 28110455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 111 - 163
Target Start/End: Original strand, 38845591 - 38845643
Alignment:
Q  111 caaaatcaattctaacagaatcaattctccccttcacacaatcaaacacacgc 163  Q
    |||||||||||||| |||||||| ||||||||  ||||||| |||||||||||    
T  38845591 caaaatcaattctatcagaatcacttctccccaccacacaaccaaacacacgc 38845643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 76 - 123
Target Start/End: Complemental strand, 44141047 - 44141000
Alignment:
Q  76 aacacaattcacttttagccagaaccacttctaaccaaaatcaattct 123  Q
    |||||||||||||||||| ||||| ||||| |||||||||||||||||    
T  44141047 aacacaattcacttttagtcagaatcacttttaaccaaaatcaattct 44141000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 1 - 70
Target Start/End: Original strand, 32927921 - 32927990
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaa 70  Q
    ||||||||| ||||||| ||||| | |||||||||||||| |||| |  |||||| ||||||||||||||    
T  32927921 cttttgattatagaattcatttttacacacaaatttatagttcaactcacttttacatgaatgtatccaa 32927990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 1 - 45
Target Start/End: Complemental strand, 13384710 - 13384666
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaa 45  Q
    ||||||||| ||||||||||||||| |||||||||||||| ||||    
T  13384710 cttttgattctagaattgattttcacacacaaatttatagttcaa 13384666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 1 - 39
Target Start/End: Original strand, 40848046 - 40848084
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttata 39  Q
    ||||||||||||||||||||||||| ||||||| |||||    
T  40848046 cttttgattttagaattgattttcacacacaaacttata 40848084  T

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Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 101 - 138
Target Start/End: Complemental strand, 28425506 - 28425469
Alignment:
Q  101 cacttctaaccaaaatcaattctaacagaatcaattct 138  Q
    ||||| ||||||||||||||||||||| ||||||||||    
T  28425506 cacttttaaccaaaatcaattctaacaaaatcaattct 28425469  T

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Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 6027105 - 6027069
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaattta 37  Q
    ||||||||| ||||||||||||||||| |||||||||    
T  6027105 cttttgattctagaattgattttcatatacaaattta 6027069  T

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Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Complemental strand, 16972119 - 16972055
Alignment:
Q  2 ttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtat 66  Q
    |||| ||||||||||||||||| | |||||||||||| | |||| |  |||||| ||||||||||    
T  16972119 ttttaattttagaattgatttttaaacacaaatttattgttcaaatcacttttacatgaatgtat 16972055  T

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Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 2 - 66
Target Start/End: Original strand, 32736492 - 32736556
Alignment:
Q  2 ttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtat 66  Q
    |||| |||||| |||| ||||| | |||||||||||||| ||||||  |||||| ||||||||||    
T  32736492 tttttattttaaaattaatttttacacacaaatttatagttcaattcacttttacatgaatgtat 32736556  T

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Target: scaffold0753 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0753
Description:

Target: scaffold0753; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 240 - 282
Target Start/End: Complemental strand, 5795 - 5753
Alignment:
Q  240 aaaaagagaggataaaacctttaatatcacaagtagacctagg 282  Q
    |||||||||||  ||||||| ||||||||||||||||||||||    
T  5795 aaaaagagaggggaaaacctataatatcacaagtagacctagg 5753  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 1 - 70
Target Start/End: Complemental strand, 31708295 - 31708226
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaatttgcttttaaatgaatgtatccaa 70  Q
    ||||||||| ||||||||||| | | |||||||||||||  |||| |  |||||| ||||||||||||||    
T  31708295 cttttgattctagaattgattctaacacacaaatttataattcaactcacttttacatgaatgtatccaa 31708226  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 4526161 - 4526205
Alignment:
Q  1 cttttgattttagaattgattttcatacacaaatttatagctcaa 45  Q
    |||||||||||| |||||||||| | |||||||||||||| ||||    
T  4526161 cttttgattttaaaattgatttttacacacaaatttatagttcaa 4526205  T

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