View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11617_low_10 (Length: 350)
Name: NF11617_low_10
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_low_10 |
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Alignment Details
Target: chr3 (Bit Score: 278; Significance: 1e-155; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 278; E-Value: 1e-155
Query Start/End: Original strand, 20 - 309
Target Start/End: Complemental strand, 30535678 - 30535389
Alignment:
| Q |
20 |
gagaaaatattcaaaaaagtaagcaaagtgtctgctacttttaacttgttaaggtacaatagtccgtcatcaatttcttttcatttaggagaaaatttca |
119 |
Q |
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| T |
30535678 |
gagaaaatattcaaaaaagtaagaaaagtgtctgctacttttaacttgttaaggtacaatagtccgtcatcaatttcttttcatttaggagaaaatttca |
30535579 |
T |
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| Q |
120 |
ataaccaaaataaggtaataaagttgcatactaacccttcaaattcttctcttgcgttttaaacgtttcaacaaagattgcactccttcttgcaaagttg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
30535578 |
ataaccaaaataaggtaataaagttgcatactaacccttcaaattcttctcttgcgttttaaacgtttcaacaaagattgtactccttcttgcaaagttg |
30535479 |
T |
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| Q |
220 |
ctttccttccctttttgtagttccataattctgaggttacatatctcccactaggattacattcattcatcttcatcaaagctttcacca |
309 |
Q |
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|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
30535478 |
ctttccttccctctttgtagttccataattctgaggttacatatctcccactaggattacattcattcatcttcatcaaagctttcacca |
30535389 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 200 - 339
Target Start/End: Complemental strand, 30449374 - 30449235
Alignment:
| Q |
200 |
cactccttcttgcaaagttgctttccttccctttttgtagttccataattctgaggttacatatctcccactaggattacattcattcatcttcatcaaa |
299 |
Q |
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|||||||||||||||||||||| |||||||| ||| ||||||||||| |||||||||||||||||||||||||||||| ||||||| |||| | | ||| |
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| T |
30449374 |
cactccttcttgcaaagttgctctccttcccgctttatagttccataactctgaggttacatatctcccactaggattatattcattaatctccgttaaa |
30449275 |
T |
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| Q |
300 |
gctttcaccactgcattatatgccctttcacccacttctt |
339 |
Q |
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| T |
30449274 |
gatgccaccacggcactatatgccttttcacccacttctt |
30449235 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 44; E-Value: 5e-16
Query Start/End: Original strand, 203 - 322
Target Start/End: Complemental strand, 30457128 - 30457009
Alignment:
| Q |
203 |
tccttcttgcaaagttgctttccttccctttttgtagttccataattctgaggttacatatctcccactaggattacattcattcatcttcatcaaagct |
302 |
Q |
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|||||||||||| |||||| ||||| ||| ||||| |||||||| ||||||| ||| | ||| |||||||||||| |||||||||||| |||||||| |
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| T |
30457128 |
tccttcttgcaatgttgctctcctttcctctttgtggttccatagttctgagattagacatccaccactaggattatattcattcatctctttcaaagct |
30457029 |
T |
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| Q |
303 |
ttcaccactgcattatatgc |
322 |
Q |
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|| |||| |||| |||||| |
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| T |
30457028 |
atcgccacggcatcatatgc |
30457009 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 203 - 291
Target Start/End: Complemental strand, 30475600 - 30475512
Alignment:
| Q |
203 |
tccttcttgcaaagttgctttccttccctttttgtagttccataattctgaggttacatatctcccactaggattacattcattcatct |
291 |
Q |
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|||||||||||| |||||| ||||| || | |||||||||||||||||| || ||||| |||||||||||| |||||||||||| |
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| T |
30475600 |
tccttcttgcaatgttgctctccttttctcactatagttccataattctgagattggatatccgccactaggattatattcattcatct |
30475512 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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