View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11617_low_11 (Length: 331)
Name: NF11617_low_11
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 288; Significance: 1e-161; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 288; E-Value: 1e-161
Query Start/End: Original strand, 8 - 315
Target Start/End: Complemental strand, 10679533 - 10679226
Alignment:
| Q |
8 |
aatggatgattttgtgttgatcatttgaattggtgaggatcccacaaaccgtgtgaacattctcttttgaaacctttcaggctttcagtttccaaagtag |
107 |
Q |
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| T |
10679533 |
aatggatgattttgtgttgatcatttgaattgctgaggatcccacaaaccgtgtgaacattctcttttgaaacctttcaggctttcagtttccaaagtag |
10679434 |
T |
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| Q |
108 |
gtatttttgtattatagtttattacactcatcggaaaatttgtcccaagtcgattaaacattagctgtaaatcgaatatactttcttgaccaaaaaacag |
207 |
Q |
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| T |
10679433 |
gtatttttgtattatagtttattacactcatcggaaaatttgtcccaagtcgattaaacattagctgtaaatagaatatactttcttgaccaaaaaacag |
10679334 |
T |
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| Q |
208 |
aatttaatttagtcttgacaatcattcgattataggcatcgacgtgaccagattaggtcacaatatctttctccatgtatcctccgatcattaatataag |
307 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
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| T |
10679333 |
aatttaatttagtcttgacaatcattcgattataggcatcgaccggaccagattaggtcacaatatctttctccatgcatcctccgatcattaatataag |
10679234 |
T |
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| Q |
308 |
caaaaatt |
315 |
Q |
| |
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|||||||| |
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| T |
10679233 |
caaaaatt |
10679226 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 286 - 319
Target Start/End: Complemental strand, 28285531 - 28285498
Alignment:
| Q |
286 |
atcctccgatcattaatataagcaaaaatttgat |
319 |
Q |
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| T |
28285531 |
atcctccggtcattaatataagcaaaaatttgat |
28285498 |
T |
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