View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11617_low_12 (Length: 331)

Name: NF11617_low_12
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11617_low_12
NF11617_low_12
[»] chr8 (3 HSPs)
chr8 (15-157)||(10679645-10679786)
chr8 (158-262)||(39312534-39312638)
chr8 (168-206)||(13476361-13476399)
[»] chr1 (6 HSPs)
chr1 (157-270)||(51285245-51285358)
chr1 (158-264)||(48494885-48494991)
chr1 (155-262)||(47508233-47508340)
chr1 (184-259)||(47189293-47189368)
chr1 (157-217)||(5733160-5733220)
chr1 (159-230)||(12307925-12307996)
[»] chr7 (3 HSPs)
chr7 (196-326)||(32635359-32635498)
chr7 (158-206)||(11033487-11033535)
chr7 (157-262)||(37125552-37125657)
[»] scaffold1342 (1 HSPs)
scaffold1342 (158-235)||(1227-1304)
[»] chr2 (4 HSPs)
chr2 (158-235)||(4009254-4009331)
chr2 (158-246)||(36620177-36620265)
chr2 (158-221)||(29522585-29522648)
chr2 (158-235)||(43326101-43326178)
[»] chr6 (2 HSPs)
chr6 (158-262)||(92308-92412)
chr6 (157-258)||(11139334-11139434)
[»] chr5 (3 HSPs)
chr5 (161-259)||(13627363-13627461)
chr5 (157-228)||(3805677-3805748)
chr5 (158-206)||(22775942-22775990)
[»] scaffold0026 (1 HSPs)
scaffold0026 (158-234)||(91558-91634)
[»] chr4 (2 HSPs)
chr4 (158-262)||(55403334-55403438)
chr4 (177-206)||(54486281-54486310)


Alignment Details
Target: chr8 (Bit Score: 78; Significance: 3e-36; HSPs: 3)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 15 - 157
Target Start/End: Original strand, 10679645 - 10679786
Alignment:
Q  15 tacgagagaagtagataaactgtatgattaagaaaacgaaattgagatatagacataggaagtaggataaatctggac-agnnnnnnnnnnnnnacagta 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||  ||||||||||||||||||||||||||||||  |             ||||||    
T  10679645 tacgagagaagtagataaactgtatgattaagaaaacgaaattgag--atagacataggaagtaggataaatctggactggacagatatatataacagta 10679742  T
Q  114 cttaacgattgaccgggtcacaagacaacttttattattgtacc 157  Q
    ||||||||||||||||||||| ||||||||||||||||||||||    
T  10679743 cttaacgattgaccgggtcaccagacaacttttattattgtacc 10679786  T

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Target: chr8; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 39312534 - 39312638
Alignment:
Q  158 cagtggcggagccacgtggggacaggggatggccatggccatcccatt-atttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacc 256  Q
    |||||||||||||||||| ||||| |||||||||||||||| |||||| |||| || |||| |||||||||||||||| ||||| ||||| || ||||||    
T  39312534 cagtggcggagccacgtgaggacatgggatggccatggccaccccattaatttgtg-gaaattaccaaaatacccttgggttaaaatgaattttacaacc 39312632  T
Q  257 atgcca 262  Q
    ||||||    
T  39312633 atgcca 39312638  T

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Target: chr8; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 168 - 206
Target Start/End: Complemental strand, 13476399 - 13476361
Alignment:
Q  168 gccacgtggggacaggggatggccatggccatcccatta 206  Q
    |||||||| |||||||||||| |||||||||||||||||    
T  13476399 gccacgtgtggacaggggatgaccatggccatcccatta 13476361  T

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Target: chr1 (Bit Score: 78; Significance: 3e-36; HSPs: 6)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 157 - 270
Target Start/End: Original strand, 51285245 - 51285358
Alignment:
Q  157 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacc 256  Q
    |||||||||||||||||||||||||||||| ||||||||||| |||||||||| || |||| ||||||||||||||| ||||||||| ||||  ||||||    
T  51285245 ccagtggcggagccacgtggggacaggggaaggccatggccaccccattatttttgagaaattaccaaaatacccttaagttaatataaaatctacaacc 51285344  T
Q  257 atgccaccctcact 270  Q
    ||||||||||||||    
T  51285345 atgccaccctcact 51285358  T

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Target: chr1; HSP #2
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 158 - 264
Target Start/End: Complemental strand, 48494991 - 48494885
Alignment:
Q  158 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacca 257  Q
    |||||||||| ||||||||||||||||||||||||||  | ||||||||||| ||  ||| ||||||||||||||||||||||||||||||| |||||||    
T  48494991 cagtggcggaaccacgtggggacaggggatggccatgatcgtcccattatttgtggaaaattaccaaaatacccttgagttaatatgaaatttacaacca 48494892  T
Q  258 tgccacc 264  Q
    |||||||    
T  48494891 tgccacc 48494885  T

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Target: chr1; HSP #3
Raw Score: 57; E-Value: 9e-24
Query Start/End: Original strand, 155 - 262
Target Start/End: Original strand, 47508233 - 47508340
Alignment:
Q  155 acccagtggcggagccacgtggggacaggggatggccatggccatcccat-tatttatgtgaaaataccaaaatacccttgagttaatatgaaattcaca 253  Q
    ||||||||||||||||||||| |||||||||||||||||||||| |||||  |||| || |||| |||||||||||||||| ||||| ||||| || |||    
T  47508233 acccagtggcggagccacgtgaggacaggggatggccatggccaccccatcaatttgtg-gaaattaccaaaatacccttgggttaaaatgaattttaca 47508331  T
Q  254 accatgcca 262  Q
    |||||||||    
T  47508332 accatgcca 47508340  T

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Target: chr1; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 184 - 259
Target Start/End: Original strand, 47189293 - 47189368
Alignment:
Q  184 ggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaaccatg 259  Q
    ||||||||||||||  |||||||||| || |||| ||||||||||||||||||||||||||||||  |||||||||    
T  47189293 ggatggccatggcctacccattatttttgggaaattaccaaaatacccttgagttaatatgaaatatacaaccatg 47189368  T

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Target: chr1; HSP #5
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 157 - 217
Target Start/End: Original strand, 5733160 - 5733220
Alignment:
Q  157 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaa 217  Q
    |||||||||||||||| ||||||| |||||||||||| |||  ||||||||||||| ||||    
T  5733160 ccagtggcggagccacttggggactggggatggccatagcctacccattatttatgagaaa 5733220  T

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Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 159 - 230
Target Start/End: Complemental strand, 12307996 - 12307925
Alignment:
Q  159 agtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacc 230  Q
    |||||||||||| | ||||||||||| ||||||||||||  ||||||| || ||||||| ||| | ||||||    
T  12307996 agtggcggagccgcatggggacagggtatggccatggcctacccattagttctgtgaaattactataatacc 12307925  T

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Target: chr7 (Bit Score: 76; Significance: 4e-35; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 196 - 326
Target Start/End: Original strand, 32635359 - 32635498
Alignment:
Q  196 ccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaaccatgccaccctcact---------atgcgctcttctctct 286  Q
    ||||||||||||||||| |||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||         | |||||| ||||||     
T  32635359 ccatcccattatttatgagaaattaccaaaatacccttgagttaatatgaaatttacaaccatgccaccctcacttttcctgaaacgcgctcatctctcc 32635458  T
Q  287 actctggcgacgaccacgtgagttcactcttcttctctct 326  Q
    ||||||||||||||||||  ||||||||||||||||||||    
T  32635459 actctggcgacgaccacgcaagttcactcttcttctctct 32635498  T

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Target: chr7; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 11033487 - 11033535
Alignment:
Q  158 cagtggcggagccacgtggggacaggggatggccatggccatcccatta 206  Q
    |||||||||||||||||| |||||||| |||||||||||||||||||||    
T  11033487 cagtggcggagccacgtgtggacagggaatggccatggccatcccatta 11033535  T

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Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 157 - 262
Target Start/End: Original strand, 37125552 - 37125657
Alignment:
Q  157 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacc 256  Q
    |||||||||||||||| ||||||||| | ||||||||||||  ||||||| || | ||||| ||| | |||||||||||  |||| | || || ||||||    
T  37125552 ccagtggcggagccacatggggacagagtatggccatggcctacccattaattctttgaaattactataatacccttgatataattttaattttacaacc 37125651  T
Q  257 atgcca 262  Q
    ||||||    
T  37125652 atgcca 37125657  T

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Target: scaffold1342 (Bit Score: 46; Significance: 3e-17; HSPs: 1)
Name: scaffold1342
Description:

Target: scaffold1342; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 1227 - 1304
Alignment:
Q  158 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttga 235  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||||||||| ||||||| ||| |  ||||||||||    
T  1227 cagtggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaattactattatacccttga 1304  T

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Target: chr2 (Bit Score: 46; Significance: 3e-17; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 4009254 - 4009331
Alignment:
Q  158 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttga 235  Q
    ||||||||||||||| ||||||||||||||||||||||||  |||||||||| ||||||| ||| |  ||||||||||    
T  4009254 cagtggcggagccacttggggacaggggatggccatggcctgcccattatttttgtgaaattactattatacccttga 4009331  T

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Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 158 - 246
Target Start/End: Complemental strand, 36620265 - 36620177
Alignment:
Q  158 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaa 246  Q
    |||||||||||||||||| |||| ||| ||||| ||| ||  ||||||| || ||||||| ||||| ||||||||| || |||| ||||    
T  36620265 cagtggcggagccacgtgaggactgggtatggcgatgtcctgcccattaattttgtgaaattaccataatacccttaagctaatttgaa 36620177  T

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Target: chr2; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 158 - 221
Target Start/End: Complemental strand, 29522648 - 29522585
Alignment:
Q  158 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaatac 221  Q
    |||||||||||||||||| |||| ||| ||||||||||||  ||||||  || |||||||||||    
T  29522648 cagtggcggagccacgtgtggactgggtatggccatggcctacccatttattttgtgaaaatac 29522585  T

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Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 158 - 235
Target Start/End: Original strand, 43326101 - 43326178
Alignment:
Q  158 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttga 235  Q
    ||||||||||||||| || |||||||| || | |||||||  ||||||| || ||||||| ||| | |||||||||||    
T  43326101 cagtggcggagccacatgaggacagggtatagtcatggcctacccattaattctgtgaaattactataatacccttga 43326178  T

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Target: chr6 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 92308 - 92412
Alignment:
Q  158 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacca 257  Q
    ||||||||||||||| ||||||||||| ||||||||||||  ||||||| || ||||||| ||| | |||||| ||||  |||| | || || |||||||    
T  92308 cagtggcggagccacatggggacagggtatggccatggcctacccattaattctgtgaaattactataatacctttgatataatcttaattttacaacca 92407  T
Q  258 tgcca 262  Q
    |||||    
T  92408 tgcca 92412  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 157 - 258
Target Start/End: Original strand, 11139334 - 11139434
Alignment:
Q  157 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacc 256  Q
    ||||||||||| |||| || |||| ||||||||||||||||  ||||||||||    |||| || ||||||||||||  ||||| |||||||| ||||||    
T  11139334 ccagtggcgga-ccacttgaggactggggatggccatggcctccccattattttatagaaattatcaaaatacccttaggttaaaatgaaatttacaacc 11139432  T
Q  257 at 258  Q
    ||    
T  11139433 at 11139434  T

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Target: chr5 (Bit Score: 40; Significance: 0.0000000000001; HSPs: 3)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 161 - 259
Target Start/End: Complemental strand, 13627461 - 13627363
Alignment:
Q  161 tggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaa-taccaaaatacccttgagttaatatgaaattcacaaccatg 259  Q
    |||| |||||||||| |||||||||||||||||||||| ||||||| || ||| |||| ||||||||||| ||||  |||| ||||| || |||||||||    
T  13627461 tggcagagccacgtgaggacaggggatggccatggccaccccattaatt-tgtaaaaattaccaaaatactcttggattaaaatgaattttacaaccatg 13627363  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 157 - 228
Target Start/End: Complemental strand, 3805748 - 3805677
Alignment:
Q  157 ccagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaata 228  Q
    |||||||| |||||||||| |||| ||| ||||||||||||  ||||||| || || |||||||||| ||||    
T  3805748 ccagtggcagagccacgtgaggactgggtatggccatggcctacccattaattctgggaaaataccataata 3805677  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 158 - 206
Target Start/End: Original strand, 22775942 - 22775990
Alignment:
Q  158 cagtggcggagccacgtggggacaggggatggccatggccatcccatta 206  Q
    ||||||||||||||| |||||||||||| ||||||| |||  |||||||    
T  22775942 cagtggcggagccacttggggacaggggctggccatagcctacccatta 22775990  T

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Target: scaffold0026 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 234
Target Start/End: Original strand, 91558 - 91634
Alignment:
Q  158 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttg 234  Q
    |||||| ||||||||||| |||||||| ||||||||||||  |||| ||||| ||||||| || || ||||||||||    
T  91558 cagtggtggagccacgtgaggacagggtatggccatggcctacccagtatttctgtgaaattatcataatacccttg 91634  T

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Target: chr4 (Bit Score: 37; Significance: 0.000000000008; HSPs: 2)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 158 - 262
Target Start/End: Original strand, 55403334 - 55403438
Alignment:
Q  158 cagtggcggagccacgtggggacaggggatggccatggccatcccattatttatgtgaaaataccaaaatacccttgagttaatatgaaattcacaacca 257  Q
    ||||||||||||||| ||||||||| | |||| |||||||  ||||||| || ||||||| ||| | |||||||||||  |||| | || || |||||||    
T  55403334 cagtggcggagccacatggggacagagtatggtcatggcctacccattaattctgtgaaattactataatacccttgatataattttaattttacaacca 55403433  T
Q  258 tgcca 262  Q
    |||||    
T  55403434 tgcca 55403438  T

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Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 177 - 206
Target Start/End: Original strand, 54486281 - 54486310
Alignment:
Q  177 ggacaggggatggccatggccatcccatta 206  Q
    ||||||||||||||||||||||||||||||    
T  54486281 ggacaggggatggccatggccatcccatta 54486310  T

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