View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11617_low_15 (Length: 286)

Name: NF11617_low_15
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11617_low_15
NF11617_low_15
[»] chr4 (16 HSPs)
chr4 (1-247)||(9134357-9134603)
chr4 (201-285)||(1616356-1616439)
chr4 (243-286)||(9134617-9134660)
chr4 (201-286)||(29728949-29729035)
chr4 (233-286)||(32818405-32818458)
chr4 (234-286)||(8604657-8604709)
chr4 (234-286)||(30472932-30472984)
chr4 (234-286)||(9064229-9064281)
chr4 (163-247)||(21691312-21691396)
chr4 (234-286)||(35065061-35065113)
chr4 (233-283)||(53713599-53713649)
chr4 (233-286)||(21691247-21691300)
chr4 (237-286)||(26617469-26617518)
chr4 (233-286)||(30357509-30357562)
chr4 (238-286)||(20712849-20712897)
chr4 (233-269)||(29779106-29779142)
[»] chr2 (11 HSPs)
chr2 (179-285)||(43501068-43501174)
chr2 (234-286)||(42740975-42741027)
chr2 (233-286)||(33019191-33019244)
chr2 (233-286)||(12037058-12037111)
chr2 (236-286)||(42982544-42982594)
chr2 (233-286)||(43717321-43717375)
chr2 (244-286)||(44439262-44439304)
chr2 (233-270)||(21234576-21234613)
chr2 (233-286)||(22535995-22536048)
chr2 (233-273)||(6327117-6327157)
chr2 (234-286)||(31453381-31453433)
[»] chr7 (9 HSPs)
chr7 (163-273)||(17111784-17111894)
chr7 (234-286)||(30182331-30182383)
chr7 (235-285)||(28725088-28725138)
chr7 (175-286)||(38123701-38123812)
chr7 (233-284)||(41386852-41386903)
chr7 (233-286)||(1410959-1411012)
chr7 (233-286)||(27571859-27571912)
chr7 (233-285)||(597982-598033)
chr7 (234-286)||(22195862-22195914)
[»] chr8 (14 HSPs)
chr8 (234-286)||(13384689-13384741)
chr8 (199-286)||(38335896-38335983)
chr8 (234-286)||(11572493-11572545)
chr8 (188-286)||(15677851-15677949)
chr8 (233-286)||(11574279-11574332)
chr8 (214-286)||(7244636-7244708)
chr8 (234-286)||(30098908-30098960)
chr8 (234-286)||(38868496-38868548)
chr8 (187-286)||(32994277-32994376)
chr8 (232-286)||(4662938-4662992)
chr8 (236-286)||(16972099-16972149)
chr8 (236-286)||(32927892-32927942)
chr8 (201-286)||(40847981-40848067)
chr8 (234-286)||(6027084-6027136)
[»] chr5 (12 HSPs)
chr5 (190-286)||(39097200-39097296)
chr5 (234-286)||(9818732-9818784)
chr5 (234-286)||(18851117-18851169)
chr5 (234-286)||(38845441-38845493)
chr5 (190-271)||(1102087-1102169)
chr5 (235-281)||(22226276-22226322)
chr5 (234-284)||(31906257-31906307)
chr5 (233-286)||(18637281-18637334)
chr5 (233-286)||(38587084-38587136)
chr5 (254-286)||(370768-370800)
chr5 (234-286)||(6951340-6951392)
chr5 (234-286)||(11648080-11648132)
[»] chr6 (13 HSPs)
chr6 (233-286)||(3482043-3482096)
chr6 (237-286)||(12126163-12126212)
chr6 (233-286)||(30927040-30927093)
chr6 (233-285)||(765422-765474)
chr6 (234-286)||(4910906-4910958)
chr6 (187-286)||(6895985-6896084)
chr6 (175-245)||(33136577-33136647)
chr6 (234-286)||(434272-434324)
chr6 (244-286)||(31305882-31305924)
chr6 (233-286)||(1485181-1485234)
chr6 (234-283)||(16540105-16540154)
chr6 (234-286)||(2234513-2234565)
chr6 (234-274)||(7280488-7280528)
[»] chr1 (9 HSPs)
chr1 (201-286)||(28287371-28287456)
chr1 (188-286)||(11049202-11049300)
chr1 (234-286)||(28083923-28083975)
chr1 (234-286)||(48549047-48549099)
chr1 (234-284)||(3016160-3016210)
chr1 (241-286)||(7524118-7524163)
chr1 (188-241)||(47322004-47322057)
chr1 (234-286)||(3416078-3416130)
chr1 (238-286)||(3515820-3515868)
[»] chr3 (9 HSPs)
chr3 (233-286)||(32111991-32112045)
chr3 (233-286)||(40147885-40147938)
chr3 (234-276)||(30948075-30948117)
chr3 (234-271)||(7742193-7742230)
chr3 (233-286)||(37335069-37335122)
chr3 (233-270)||(41115413-41115450)
chr3 (237-286)||(54596819-54596868)
chr3 (234-286)||(35058065-35058117)
chr3 (233-269)||(40339223-40339259)
[»] scaffold0168 (1 HSPs)
scaffold0168 (234-286)||(31824-31876)


Alignment Details
Target: chr4 (Bit Score: 200; Significance: 1e-109; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 1 - 247
Target Start/End: Original strand, 9134357 - 9134603
Alignment:
Q  1 ttgtttatattttcatttgatttctttcatgagacaatacaatacttgtatatatttacatagtaaggtaaccaacaattacacgataactaccgagtaa 100  Q
    ||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||||||| ||||||||| |||||    
T  9134357 ttgtttatattttcatt-gatttctttcatgagacaatacaatacttgtatatatatacataataaggtaaccaacaattacactataactaccaagtaa 9134455  T
Q  101 ctcgctaatataatataactaaaatacccctattaaaataaactatctaagtgtatgtttggcttctagagggaccaaaattaa-tcctggaggtgtata 199  Q
    || |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||    
T  9134456 cttgctaatataatatacctaaaatacccctattaaaataaactatctaagtgtatgtttggcttctagagggaccaaaattaatttctggaggtgtata 9134555  T
Q  200 tttgattttgacaagtttagttgttatcgagtggaattgattttactt 247  Q
    ||||||||||||| ||||||||||||||||||||||||||||||||||    
T  9134556 tttgattttgacatgtttagttgttatcgagtggaattgattttactt 9134603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 201 - 285
Target Start/End: Original strand, 1616356 - 1616439
Alignment:
Q  201 ttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgatt 285  Q
    |||||| ||||| | || ||||||||||||| ||||||||| ||||| |||||| |||||||||||||||||| |||||||||||    
T  1616356 ttgattctgacatgattggttgttatcgagtagaattgattctactt-aagctacaatttgtagcttttgattctagaattgatt 1616439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 243 - 286
Target Start/End: Original strand, 9134617 - 9134660
Alignment:
Q  243 tacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||||||||||||||||||||||||||||||||||||||    
T  9134617 tacttgaagctaaaatttgtagcttttgattttagaattgattt 9134660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 29728949 - 29729035
Alignment:
Q  201 ttgattttgacaagtttagttgttatcgagtggaattgatt-ttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||||||||||| |||| | |||||| ||||||||| | |||||||| ||||| ||| |||||||||||  |||||||||||    
T  29728949 ttgattttgacaagtttggttgctctcgagtagaattgattataacttgaagttaaaaattgaagcttttgattcaagaattgattt 29729035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 32818458 - 32818405
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| || ||||||||| |||||||||||||||||| ||||||||||||    
T  32818458 gaattgattctatttgaagctagaatttgtagcttttgattctagaattgattt 32818405  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 8604709 - 8604657
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||| |||||||||||| |||| ||||||||||||    
T  8604709 aattgattctacttgaagctaagatttgtagctttcgattctagaattgattt 8604657  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 30472932 - 30472984
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||||||| ||| || ||||||||| |||||||||||||||||||||    
T  30472932 aattgattttacttcaagttagaatttgtagtttttgattttagaattgattt 30472984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 9064229 - 9064281
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| |||||||| ||| ||||||||| |||||||| ||||||||||||    
T  9064229 aattgattctacttgaaactagaatttgtagtttttgattctagaattgattt 9064281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 163 - 247
Target Start/End: Complemental strand, 21691396 - 21691312
Alignment:
Q  163 cttctagagggaccaaaattaatcctggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttactt 247  Q
    ||||||||||||||| |||| || ||||||||||| | |||||| |||||  ||| |||||| |||||| | ||||||| |||||    
T  21691396 cttctagagggaccagaattgattctggaggtgtagaattgattctgacatatttggttgttgtcgagtagtattgattctactt 21691312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 35065061 - 35065113
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||||||||||||||  ||||||  ||||||||| ||||||||||||    
T  35065061 aattgattttacttgaagctagtatttgtgacttttgattctagaattgattt 35065113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 283
Target Start/End: Complemental strand, 53713649 - 53713599
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattga 283  Q
    ||||| ||||||||||||||||  ||||||||||||||||| || ||||||    
T  53713649 gaattaattttacttgaagctacgatttgtagcttttgattctataattga 53713599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 21691300 - 21691247
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||  ||||||| |||| |||||||||||||| || ||||||||||||    
T  21691300 gaattgattcaacttgaaactaagatttgtagcttttggttgtagaattgattt 21691247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 26617469 - 26617518
Alignment:
Q  237 tgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||| |||||||||||| ||| |||||||||||||| || |||||||||    
T  26617469 tgattctacttgaagctagaatctgtagcttttgattataaaattgattt 26617518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 30357509 - 30357562
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| |||||||||||   ||||||||||||||||| || |||||||||    
T  30357509 gaattgattctacttgaagctgtgatttgtagcttttgattatataattgattt 30357562  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Complemental strand, 20712897 - 20712849
Alignment:
Q  238 gattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||| |||||||||||||||||||||| |||| |||  |||||||||||    
T  20712897 gattctacttgaagctaaaatttgtagttttttattgaagaattgattt 20712849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Complemental strand, 29779142 - 29779106
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagctttt 269  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  29779142 gaattgattctacttgaagctagaatttgtagctttt 29779106  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 47; Significance: 7e-18; HSPs: 11)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 47; E-Value: 7e-18
Query Start/End: Original strand, 179 - 285
Target Start/End: Original strand, 43501068 - 43501174
Alignment:
Q  179 aattaatcctggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttaga 278  Q
    |||| ||||||||| |||| | |||||| ||||| |||| |||| | || ||| ||||||||| |||||||| |||  ||||||||||||||||||||||    
T  43501068 aattgatcctggagctgtagaattgattctgacatgtttggttgctttcaagtagaattgattctacttgaaactaggatttgtagcttttgattttaga 43501167  T
Q  279 attgatt 285  Q
    |||||||    
T  43501168 attgatt 43501174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 42740975 - 42741027
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||| ||||||||||||||||| ||||||||||||    
T  42740975 aattgattctacttgaagctaagatttgtagcttttgattctagaattgattt 42741027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 33019244 - 33019191
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| || ||||||||| ||||||||||||||| |||||||||||||||    
T  33019244 gaattgattatatttgaagctagaatttgtagcttttggttttagaattgattt 33019191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 12037058 - 12037111
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| || ||||| |||||||||||||||||||||| || |||||||||    
T  12037058 gaattgattctagttgaaactaaaatttgtagcttttgattctacaattgattt 12037111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 42982544 - 42982594
Alignment:
Q  236 ttgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||| |||||||||||| || |||||||||||||||  |||||||||||    
T  42982544 ttgattctacttgaagctagaaattgtagcttttgattccagaattgattt 42982594  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 43717321 - 43717375
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagctt-ttgattttagaattgattt 286  Q
    ||||||||| |||||||||||| |||||||||||| ||| ||||| |||||||||    
T  43717321 gaattgattctacttgaagctagaatttgtagcttcttgcttttacaattgattt 43717375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 286
Target Start/End: Original strand, 44439262 - 44439304
Alignment:
Q  244 acttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||||||||||| ||||||||||| || |||||||||    
T  44439262 acttgaagctaaaatttggagcttttgattctaaaattgattt 44439304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 21234613 - 21234576
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttg 270  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  21234613 gaattgattctacttgaagctagaatttgtagcttttg 21234576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 22535995 - 22536048
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| ||||||||  || |||||| ||||||||||||||||||| ||||    
T  22535995 gaattgattctacttgaatttagaatttgaagcttttgattttagaattaattt 22536048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 273
Target Start/End: Complemental strand, 6327157 - 6327117
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgatt 273  Q
    ||||||||| |||||||| ||||||||||||| ||||||||    
T  6327157 gaattgattctacttgaaactaaaatttgtagtttttgatt 6327117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 31453381 - 31453433
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||||||||||  ||||||||| |  |||||||||    
T  31453381 aattgattctacttgaagctaaaatttgttccttttgattctgaaattgattt 31453433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 9)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 163 - 273
Target Start/End: Original strand, 17111784 - 17111894
Alignment:
Q  163 cttctagagggaccaaaattaatcctggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgt 262  Q
    |||||||||||  |||||||||| || ||| |||  | |||||| ||||| |||| |||| | |||||| ||||||||| ||||||||||||  ||||||    
T  17111784 cttctagaggggtcaaaattaattctagagatgtcgaattgattctgacatgtttggttgctttcgagtagaattgattctacttgaagctatgatttgt 17111883  T
Q  263 agcttttgatt 273  Q
    |||||||||||    
T  17111884 agcttttgatt 17111894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 30182383 - 30182331
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||||| ||||||||||||||| ||||||| ||||    
T  30182383 aattgattctacttgaagctaaaaattgtagcttttgattctagaattaattt 30182331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 235 - 285
Target Start/End: Complemental strand, 28725138 - 28725088
Alignment:
Q  235 attgattttacttgaagctaaaatttgtagcttttgattttagaattgatt 285  Q
    ||||||| |||||||||||| |||||||||||||||||| || ||||||||    
T  28725138 attgattatacttgaagctagaatttgtagcttttgattctataattgatt 28725088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 175 - 286
Target Start/End: Complemental strand, 38123812 - 38123701
Alignment:
Q  175 ccaaaattaatcctggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattt 274  Q
    |||||||| || || ||| |||| | |||||||| ||| |||| |||  |||  ||| ||||||||| |||||||||||| || ||||||||| | |||     
T  38123812 ccaaaattgattctagagatgtagaattgattttaacatgtttggttcctataaagtagaattgattctacttgaagctagaaattgtagcttctaattc 38123713  T
Q  275 tagaattgattt 286  Q
    ||||||||||||    
T  38123712 tagaattgattt 38123701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 233 - 284
Target Start/End: Complemental strand, 41386903 - 41386852
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgat 284  Q
    ||||||||| ||||||||||||  ||||||||||||| ||| ||||||||||    
T  41386903 gaattgattctacttgaagctaggatttgtagcttttaattctagaattgat 41386852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 1410959 - 1411012
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| || |||||| || ||||||||| ||||| |||||||||||||||    
T  1410959 gaattgattctatttgaagttataatttgtagattttgtttttagaattgattt 1411012  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 27571859 - 27571912
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| ||||||||| || || ||| ||||||||||| ||||||||||||    
T  27571859 gaattgattctacttgaagttagaaattggagcttttgattctagaattgattt 27571912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 598033 - 597982
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgatt 285  Q
    ||||||||| ||||||||||||||| |||||||||| |||| || ||||||||    
T  598033 gaattgattctacttgaagctaaaa-ttgtagctttcgattctataattgatt 597982  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 22195862 - 22195914
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||||||| ||||||  ||||||| ||||||||| || |||||||||    
T  22195862 aattgattttactttaagctatgatttgtaacttttgattctaaaattgattt 22195914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 14)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 13384741 - 13384689
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| || |||||||||||||||||||||||||||| ||||||||||||    
T  13384741 aattgattctatttgaagctaaaatttgtagcttttgattctagaattgattt 13384689  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 199 - 286
Target Start/End: Complemental strand, 38335983 - 38335896
Alignment:
Q  199 atttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||| ||||  ||||| ||||||  ||||||||  | |||||||||| |||||| |||||||||||||||||||||||    
T  38335983 atttgattctgacatgtttgtttgttttcgagtataattgattccagttgaagctaagatttgttgcttttgattttagaattgattt 38335896  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 11572545 - 11572493
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| |||||||||||||||||||||| |||||||| || |||||||||    
T  11572545 aattgattatacttgaagctaaaatttgtagattttgattataaaattgattt 11572493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 286
Target Start/End: Complemental strand, 15677949 - 15677851
Alignment:
Q  188 tggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||| |||| | |||||| ||||| |||| |||| | || | | ||||||||| ||||||||||||  |||| |||||||||||| ||||||||||||    
T  15677949 tggagttgtacaattgattctgacatgtttggttgctttcaaatagaattgattctacttgaagctaggatttatagcttttgattatagaattgattt 15677851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 11574332 - 11574279
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||||||||| |||| ||||||||||| |||||| | ||||||||||||    
T  11574332 gaattgattttacttaaagcaaaaatttgtagattttgaatatagaattgattt 11574279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 286
Target Start/End: Complemental strand, 7244708 - 7244636
Alignment:
Q  214 gtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| || |||| | ||||||||| |||||||| |||| || ||||| |||||||| ||||||||||||    
T  7244708 gtttagttattgtcgactagaattgattctacttgaaactaagatatgtagtttttgattctagaattgattt 7244636  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 30098908 - 30098960
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||||| ||||||||| ||||||||||||| |||| ||||||| ||||    
T  30098908 aattgattttatttgaagctagaatttgtagctttcgattctagaattaattt 30098960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 38868496 - 38868548
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||| |||||||||||||| || || |||||||||    
T  38868496 aattgattctacttgaagctaagatttgtagcttttggttctataattgattt 38868548  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 32994376 - 32994277
Alignment:
Q  187 ctggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||| ||||| | |||||| ||| | |||| |||| | ||| || ||||||||| ||||||||||||  |||| |||||||||| | ||||||||||||    
T  32994376 ctggatgtgtagaattgattatgatatgtttggttgctttcgtgtagaattgattctacttgaagctatgatttctagcttttgagtctagaattgattt 32994277  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 232 - 286
Target Start/End: Complemental strand, 4662992 - 4662938
Alignment:
Q  232 ggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||| ||| ||||||||||||  |||||||||||||| || ||||||||||||    
T  4662992 ggaatttattctacttgaagctaggatttgtagcttttgtttctagaattgattt 4662938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Complemental strand, 16972149 - 16972099
Alignment:
Q  236 ttgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||| || ||||||||| ||||||||| |||| ||||||||||||||||    
T  16972149 ttgattgtatttgaagctagaatttgtagtttttaattttagaattgattt 16972099  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 236 - 286
Target Start/End: Original strand, 32927892 - 32927942
Alignment:
Q  236 ttgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||| ||||||||||||  ||||||||||||||||| ||||||| ||||    
T  32927892 ttgattctacttgaagctaggatttgtagcttttgattatagaattcattt 32927942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 201 - 286
Target Start/End: Original strand, 40847981 - 40848067
Alignment:
Q  201 ttgattttgacaagtttagttgttatcgagtggaattgatttta-cttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||| ||| | ||||||||| |||| | |  ||||||||||  |||||||||| ||||| || ||||||||||||||||||||||    
T  40847981 ttgattctgatatgtttagttgctatcaaatataattgattttgtcttgaagctataatttatatcttttgattttagaattgattt 40848067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 6027136 - 6027084
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| |||||| || |||| | |||||||||||||| ||||||||||||    
T  6027136 aattgattctacttgtagttaaagtatgtagcttttgattctagaattgattt 6027084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 41; Significance: 0.00000000000003; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 190 - 286
Target Start/End: Original strand, 39097200 - 39097296
Alignment:
Q  190 gaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| | |||||||||||| |||| |||| | ||  || ||||||||| ||||||||||||||||||||| ||||| ||| || |||||||||    
T  39097200 gaggtgtagaattgattttgacatgtttggttggtttcaggtagaattgattctacttgaagctaaaatttgtaacttttaattatataattgattt 39097296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 9818732 - 9818784
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||  ||||||||||||||||| ||||||||||||    
T  9818732 aattgattctacttgaagctatgatttgtagcttttgattctagaattgattt 9818784  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 18851169 - 18851117
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||  ||||||||||||||||| ||||||||||||    
T  18851169 aattgattctacttgaagctatgatttgtagcttttgattatagaattgattt 18851117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 38845441 - 38845493
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||| |||||||| |||||||| ||||||||||||    
T  38845441 aattgattctacttgaagctaagatttgtagtttttgattctagaattgattt 38845493  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 190 - 271
Target Start/End: Original strand, 1102087 - 1102169
Alignment:
Q  190 gaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgatttta-cttgaagctaaaatttgtagcttttga 271  Q
    |||| ||||| |||||||||||  |||||| |||| |  ||| |||||||||||| ||||||||||  |||||||||||||||    
T  1102087 gaggggtataattgattttgacgtgtttaggtgttctgaagtagaattgattttaacttgaagctaggatttgtagcttttga 1102169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 235 - 281
Target Start/End: Complemental strand, 22226322 - 22226276
Alignment:
Q  235 attgattttacttgaagctaaaatttgtagcttttgattttagaatt 281  Q
    ||||||| ||||||||| ||  |||||||||||||||||||||||||    
T  22226322 attgattctacttgaagatagtatttgtagcttttgattttagaatt 22226276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 31906257 - 31906307
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgat 284  Q
    |||||||||||||||||||||  ||||||| ||||||||| || |||||||    
T  31906257 aattgattttacttgaagctatgatttgtaacttttgattatataattgat 31906307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 18637281 - 18637334
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||  |||||||||||| ||  ||||||||||||| ||||||||||||    
T  18637281 gaattgattccacttgaagctaagataagtagcttttgattctagaattgattt 18637334  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 38587084 - 38587136
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||||||||||  |||| |||||||||||||| ||||| |||||||||    
T  38587084 gaattgattttacttgagcctaagatttgtagcttttg-ttttataattgattt 38587136  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 254 - 286
Target Start/End: Complemental strand, 370800 - 370768
Alignment:
Q  254 aaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||||||||||||||||| |||||||||    
T  370800 aaaatttgtagcttttgattttaaaattgattt 370768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 6951392 - 6951340
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||| ||  ||||||||||||||||| || |||||||||    
T  6951392 aattgattctacttgaagttaggatttgtagcttttgattctataattgattt 6951340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 11648080 - 11648132
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||| |||||||  |||||||| || |||||||||    
T  11648080 aattgattctacttgaagctaagatttgtacattttgattataaaattgattt 11648132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 13)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 3482043 - 3482096
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| ||||||||| ||| ||||||||| ||||||||||||||||||||    
T  3482043 gaattgattatacttgaagttaagatttgtagcctttgattttagaattgattt 3482096  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 12126163 - 12126212
Alignment:
Q  237 tgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| |||||||| ||||||| ||||||||||||||||||||||||    
T  12126163 tgattttatttgaagctgaaatttgcagcttttgattttagaattgattt 12126212  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 30927040 - 30927093
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| ||||||||||||| ||| ||||||||||||| ||||||||||||    
T  30927040 gaattgattatacttgaagctaagattcgtagcttttgattatagaattgattt 30927093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 233 - 285
Target Start/End: Complemental strand, 765474 - 765422
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgatt 285  Q
    ||||||||| ||||||||||||  ||||||||||||||||| |||||||||||    
T  765474 gaattgattctacttgaagctatgatttgtagcttttgattctagaattgatt 765422  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 37; E-Value: 0.000000000007
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 4910906 - 4910958
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||  ||||||||||||||||| ||||||||||||    
T  4910906 aattgattctacttgaagctatgatttgtagcttttgattctagaattgattt 4910958  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 187 - 286
Target Start/End: Complemental strand, 6896084 - 6895985
Alignment:
Q  187 ctggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||| |||| | |||||| ||||| |||| |||||| ||||||  |||||||| ||| ||||| ||  ||||||||||||||||| ||||||| ||||    
T  6896084 ctggagatgtagaattgattatgacatgtttggttgttgtcgagtacaattgattctacctgaagttaggatttgtagcttttgattctagaatttattt 6895985  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 175 - 245
Target Start/End: Complemental strand, 33136647 - 33136577
Alignment:
Q  175 ccaaaattaatcctggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttac 245  Q
    ||||||||||| || |||||||||| |||||||||||| |||| |||| | ||||||  ||||||||||||    
T  33136647 ccaaaattaattctagaggtgtataattgattttgacatgtttggttgctctcgagtataattgattttac 33136577  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 434324 - 434272
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| || |||||| |||||||  |||||||||||||||||||||||||    
T  434324 aattgattatatttgaagttaaaattaatagcttttgattttagaattgattt 434272  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 244 - 286
Target Start/End: Complemental strand, 31305924 - 31305882
Alignment:
Q  244 acttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||||||| ||| ||||||||||| ||||||||||||    
T  31305924 acttgaagctaaaaattggagcttttgattctagaattgattt 31305882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 1485234 - 1485181
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| |||||||| ||| || ||| ||||||||||| ||||||||||||    
T  1485234 gaattgattctacttgaatctagaaattggagcttttgattctagaattgattt 1485181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 283
Target Start/End: Original strand, 16540105 - 16540154
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattga 283  Q
    |||||||| ||||||||||||  ||||||||||||||||| | |||||||    
T  16540105 aattgattctacttgaagctaggatttgtagcttttgattattgaattga 16540154  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 2234513 - 2234565
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||  ||||||||||||||  || ||||||||||| ||||||||||||    
T  2234513 aattgattcaacttgaagctaaaaactgaagcttttgattctagaattgattt 2234565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 274
Target Start/End: Original strand, 7280488 - 7280528
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattt 274  Q
    |||||||||||||| || |||||| ||||||||||||||||    
T  7280488 aattgattttacttaaaactaaaacttgtagcttttgattt 7280528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 38; Significance: 0.000000000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 201 - 286
Target Start/End: Complemental strand, 28287456 - 28287371
Alignment:
Q  201 ttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||| ||||||| || |||| | | |||| |||||| || |||||||||| |  ||||||||||||||||||||||||||||||    
T  28287456 ttgattctgacaaggttggttgcttttgagtagaattggttctacttgaagcaaggatttgtagcttttgattttagaattgattt 28287371  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 188 - 286
Target Start/End: Original strand, 11049202 - 11049300
Alignment:
Q  188 tggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||| | ||||||  |||| ||||  ||| | |||||| |||| |||| ||||||||||||  ||||||||||||||||| || |||||||||    
T  11049202 tggaggtgtagaattgattcagacatgtttcattgctttcgagtagaatcgattctacttgaagctaggatttgtagcttttgattctaaaattgattt 11049300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 28083975 - 28083923
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| |||||||||||| |||||||||||||||||| || |||| ||||    
T  28083975 aattgattctacttgaagctagaatttgtagcttttgattctataattaattt 28083923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Complemental strand, 48549099 - 48549047
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| |||||||||||| || ||||||||| ||||| ||||||||||||    
T  48549099 aattgattctacttgaagctagaaattgtagcttctgattctagaattgattt 48549047  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 284
Target Start/End: Original strand, 3016160 - 3016210
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgat 284  Q
    |||||||| ||||||||  || |||||||||||||||||| ||||||||||    
T  3016160 aattgattctacttgaacttagaatttgtagcttttgattctagaattgat 3016210  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 241 - 286
Target Start/End: Original strand, 7524118 - 7524163
Alignment:
Q  241 tttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||||| ||  ||||||||||||||||| ||||||||||||    
T  7524118 tttacttgaagttaggatttgtagcttttgattatagaattgattt 7524163  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 188 - 241
Target Start/End: Complemental strand, 47322057 - 47322004
Alignment:
Q  188 tggaggtgtatatttgattttgacaagtttagttgttatcgagtggaattgatt 241  Q
    |||||||||| | |||||||||||| |||| |||||| |||||| |||||||||    
T  47322057 tggaggtgtagaattgattttgacatgttttgttgttgtcgagtagaattgatt 47322004  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 3416078 - 3416130
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||| ||| ||| |||||||| |||| ||||||||||||||||    
T  3416078 aattgattatacttaaagttaagatttgtagttttttattttagaattgattt 3416130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 238 - 286
Target Start/End: Original strand, 3515820 - 3515868
Alignment:
Q  238 gattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||| |||||||||||| || ||||||||||| ||| ||||||||||||    
T  3515820 gattctacttgaagctagaaattgtagcttttcattctagaattgattt 3515868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 35; Significance: 0.0000000001; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Original strand, 32111991 - 32112045
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagctttt-gattttagaattgattt 286  Q
    ||||||||| |||||||||||| |||||||||||||| | |||||||||||||||    
T  32111991 gaattgattctacttgaagctacaatttgtagcttttggcttttagaattgattt 32112045  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 40147938 - 40147885
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    ||||||||| ||||| |||||| |||||| ||||||||||| ||||||||||||    
T  40147938 gaattgattctacttcaagctagaatttggagcttttgattctagaattgattt 40147885  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 234 - 276
Target Start/End: Complemental strand, 30948117 - 30948075
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgatttta 276  Q
    |||||||| || ||||||||| |||||||||||||||||||||    
T  30948117 aattgattatatttgaagctagaatttgtagcttttgatttta 30948075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 234 - 271
Target Start/End: Complemental strand, 7742230 - 7742193
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttga 271  Q
    |||| |||||||||||| ||||||||||||||||||||    
T  7742230 aattaattttacttgaaactaaaatttgtagcttttga 7742193  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 286
Target Start/End: Complemental strand, 37335122 - 37335069
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||||||||| |||| || || | ||||||||||||| ||||||||||||    
T  37335122 gaattgattttactagaagttagaaatcgtagcttttgattctagaattgattt 37335069  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 233 - 270
Target Start/End: Complemental strand, 41115450 - 41115413
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagcttttg 270  Q
    ||||||||| |||||||||||| |||||||||||||||    
T  41115450 gaattgattctacttgaagctagaatttgtagcttttg 41115413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 237 - 286
Target Start/End: Original strand, 54596819 - 54596868
Alignment:
Q  237 tgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| |||||| || |||||||| ||||| ||||||||||||||||    
T  54596819 tgattttatttgaagttagaatttgtaacttttaattttagaattgattt 54596868  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 35058065 - 35058117
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||| ||||||||  ||||||||||||| ||| ||||||||||||    
T  35058065 aattgattctacatgaagctaggatttgtagcttttaattatagaattgattt 35058117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 233 - 269
Target Start/End: Original strand, 40339223 - 40339259
Alignment:
Q  233 gaattgattttacttgaagctaaaatttgtagctttt 269  Q
    ||||||||| |||||||||||| ||||||||||||||    
T  40339223 gaattgattctacttgaagctacaatttgtagctttt 40339259  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0168 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: scaffold0168
Description:

Target: scaffold0168; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 234 - 286
Target Start/End: Original strand, 31824 - 31876
Alignment:
Q  234 aattgattttacttgaagctaaaatttgtagcttttgattttagaattgattt 286  Q
    |||||||| ||||||||||||  ||||||||||||||||| | ||||||||||    
T  31824 aattgattatacttgaagctaggatttgtagcttttgattattgaattgattt 31876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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