View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11617_low_16 (Length: 284)
Name: NF11617_low_16
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_low_16 |
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Alignment Details
Target: chr5 (Bit Score: 243; Significance: 1e-135; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 243; E-Value: 1e-135
Query Start/End: Original strand, 1 - 274
Target Start/End: Complemental strand, 14437785 - 14437503
Alignment:
| Q |
1 |
aacttaaatgtaaaattatttttataaacatccataaatgtatgatctaaaagtctcataagaaggcaaccaaataaggctcctgtatatgacaaacacg |
100 |
Q |
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| T |
14437785 |
aacttaaatgtaaaattatttttataaacatccataaatgtatgatctaaaagtctcataagaaggcaaccaaataaggctcctgtatatgacaaacacg |
14437686 |
T |
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| Q |
101 |
tatagaataagaaaaatt---------aaatatcattttcggaaaacaaacaaataaggctggccaatccatatttataagttagtagtctagaggtact |
191 |
Q |
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|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||| |
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| T |
14437685 |
tatagaataagaaaaattcaatatattaaatatcattttcggaaaacaaacaaataaggctggccaatccatatttataagttagcagtctagaagtact |
14437586 |
T |
|
| Q |
192 |
atattttttctgttacccttattttcataactttactttattaatcatatcattcaatttctaacatctttcaccgtcctttg |
274 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
14437585 |
atattttttctgttacccttattttcataactttactttattaatcatatcattcaatttctaacatctttcaccgtcctttg |
14437503 |
T |
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