View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11617_low_3 (Length: 542)
Name: NF11617_low_3
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11617_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 351; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 351; E-Value: 0
Query Start/End: Original strand, 15 - 523
Target Start/End: Complemental strand, 11173213 - 11172708
Alignment:
| Q |
15 |
cagagatagacttcgagaacaataccttcagtgaaagcctttgtgctatgctgaagttaattggaatcttcatatttgaattgtatgtgtcatatagaaa |
114 |
Q |
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| T |
11173213 |
cagagatagacttcgagaacaataccttcagtgaa-gcctttgtgctatgctgaagttaattggaatcttcatatttgaattgtatgtgtcatatagaaa |
11173115 |
T |
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| Q |
115 |
actttgtttctcatcattggtgaatatggactcataagttaataagttattcggttgagtcggatttttcagttaaatttgtttattggagggtataatg |
214 |
Q |
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| T |
11173114 |
actttgtttctcatcattggtgaatatggattcatatgctaataagttattcggttgagtcggatttttcagttaaatttgtttattggggggtataa-- |
11173017 |
T |
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| Q |
215 |
ttgttttccatattata-----------------tatttcacctgggattattatatattatggtcattgttgctataaatcaatttatcatttgctaat |
297 |
Q |
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| T |
11173016 |
-tgttttccatattatatatatatgtacttgaattatttcacctgggattattatatattatggtcattgttgctaaatatcaatttatcatttggtaat |
11172918 |
T |
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| Q |
298 |
tttgtgtgtgatattgtttagagttaatcgttctttaaattatgttgctcatagttaagttgggctagctttcaaaaactattaataggttttgagttaa |
397 |
Q |
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| T |
11172917 |
tttgtgtgtgatattgtttagagttgatcgttctttaaattatgttgctcatagttaagttgggctagctttcaaaaactatt----------------g |
11172834 |
T |
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| Q |
398 |
gttataggatttgagtgaagagtatattaatggaatgttttgagtggagagtacatttatatgaactatatacactagaatgagagagattgggagatac |
497 |
Q |
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| T |
11172833 |
gttataggatttgagtgaagagtatattaatggaatgttttgagtgaagagtacatttatatgaactatatacactagaatgagagagattgggagatag |
11172734 |
T |
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| Q |
498 |
aatggtttgagagtaatctataggta |
523 |
Q |
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| T |
11172733 |
aatggtttgagagtaatctataggta |
11172708 |
T |
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