View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11617_low_7 (Length: 412)

Name: NF11617_low_7
Description: NF11617
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11617_low_7
NF11617_low_7
[»] chr7 (5 HSPs)
chr7 (68-400)||(8799711-8800043)
chr7 (72-132)||(27616635-27616695)
chr7 (68-129)||(46014520-46014581)
chr7 (214-275)||(24363601-24363662)
chr7 (68-125)||(6440054-6440111)
[»] chr4 (6 HSPs)
chr4 (68-164)||(658225-658321)
chr4 (214-276)||(7694009-7694071)
chr4 (73-142)||(2641448-2641517)
chr4 (100-169)||(55681019-55681088)
chr4 (214-278)||(27721726-27721790)
chr4 (214-278)||(46019626-46019690)
[»] chr3 (11 HSPs)
chr3 (68-196)||(43921664-43921792)
chr3 (70-135)||(25092168-25092233)
chr3 (70-169)||(11411002-11411100)
chr3 (81-127)||(27064021-27064067)
chr3 (68-129)||(10515952-10516013)
chr3 (68-129)||(17715626-17715687)
chr3 (68-129)||(19016855-19016916)
chr3 (98-163)||(30121080-30121145)
chr3 (213-266)||(34414793-34414846)
chr3 (68-109)||(49861267-49861308)
chr3 (214-278)||(13709820-13709884)
[»] chr5 (4 HSPs)
chr5 (68-132)||(32676429-32676493)
chr5 (214-278)||(18543194-18543257)
chr5 (214-278)||(10272428-10272492)
chr5 (214-278)||(13604846-13604910)
[»] chr1 (9 HSPs)
chr1 (68-132)||(48632368-48632432)
chr1 (68-109)||(127937-127978)
chr1 (214-293)||(35017585-35017664)
chr1 (70-164)||(9148749-9148843)
chr1 (220-278)||(35707195-35707253)
chr1 (217-266)||(4025096-4025145)
chr1 (71-132)||(23432190-23432251)
chr1 (71-132)||(23636282-23636343)
chr1 (213-273)||(6279407-6279467)
[»] chr2 (8 HSPs)
chr2 (69-131)||(15989850-15989912)
chr2 (106-193)||(17651594-17651681)
chr2 (215-278)||(33192212-33192275)
chr2 (214-260)||(24097817-24097863)
chr2 (261-298)||(43489791-43489828)
chr2 (68-132)||(4747862-4747926)
chr2 (213-277)||(9530726-9530790)
chr2 (214-278)||(43065447-43065511)
[»] chr8 (8 HSPs)
chr8 (68-132)||(15850247-15850311)
chr8 (68-109)||(18602877-18602918)
chr8 (213-278)||(25869263-25869328)
chr8 (93-193)||(31772776-31772876)
chr8 (100-155)||(18393333-18393388)
chr8 (214-267)||(30277253-30277306)
chr8 (214-278)||(20672759-20672823)
chr8 (214-258)||(31862502-31862546)
[»] chr6 (6 HSPs)
chr6 (100-169)||(34013819-34013888)
chr6 (216-278)||(34939755-34939817)
chr6 (100-169)||(34010962-34011031)
chr6 (95-164)||(33234668-33234737)
chr6 (214-278)||(30782140-30782204)
chr6 (214-258)||(32386580-32386624)


Alignment Details
Target: chr7 (Bit Score: 254; Significance: 1e-141; HSPs: 5)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 68 - 400
Target Start/End: Original strand, 8799711 - 8800043
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgtcagataccgacacatgtcagacaccgcgacacggct 167  Q
    |||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  8799711 caattttatttaggacaccggtcttatttgtccgacacgtgatgtacaagtgtcataggcgtgtcagataccgacacatgtcagacaccgcgacacggct 8799810  T
Q  168 agacccaattgtgtccgtgcttcatagcttcaatattatatttacattttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatgg 267  Q
    ||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||    
T  8799811 agaccgaaatgtgtccgtgcttcatagcttcaatattatatttacattttcataagttatcctgcagagtttatgaatataagctgaaaaccacttatgg 8799910  T
Q  268 aaatgtcataactcataagctgttttcataatctctctaattagttatgctagtaaatatgctaaacttagagaagnnnnnnnnnnnnnnnnntatttgg 367  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||                 |||||||    
T  8799911 aaatgtcataactcataagctgttttcataatctctctaattagttatgctagtaaatatgctaaacttagagaagaaaaaacaaaaccaaaatatttgg 8800010  T
Q  368 aacacaacacgaaacattaacaagctcatgttt 400  Q
    |||||||||||||||||||||||||||||||||    
T  8800011 aacacaacacgaaacattaacaagctcatgttt 8800043  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 72 - 132
Target Start/End: Original strand, 27616635 - 27616695
Alignment:
Q  72 tttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgtc 132  Q
    |||||||||||||||||||||||||||| ||||||||| |||| ||||||||| |||||||    
T  27616635 tttatttaggacaccggtcttagttgtctgacacgtgtcgtacgagtgtcatatgagtgtc 27616695  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Original strand, 46014520 - 46014581
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagt 129  Q
    ||||||||||||||||| ||||||| |||||||||||| ||| |||| ||||||||||||||    
T  46014520 caattttatttaggacaacggtcttggttgtccgacacatgtcgtacgagtgtcataggagt 46014581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 214 - 275
Target Start/End: Complemental strand, 24363662 - 24363601
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtca 275  Q
    |||||||||| |||||||||||| ||||| | ||| ||||||||| ||||||||| ||||||    
T  24363662 ttttcataagctatcctggagaggttatggaaataagctgaaaacaacttatggacatgtca 24363601  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 125
Target Start/End: Original strand, 6440054 - 6440111
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcatag 125  Q
    ||||||||||||||||||  || |||| ||| |||||||||| |||| ||||||||||    
T  6440054 caattttatttaggacacttgttttagatgtacgacacgtgtcgtacgagtgtcatag 6440111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 57; Significance: 1e-23; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 164
Target Start/End: Complemental strand, 658321 - 658225
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgtcagataccgacacatgtcagacaccgcgacacg 164  Q
    |||||||||||||||||| |||||| ||| |||||||||||| ||||||||||||||| |||||| || |||||||| |||| ||||| ||||||||    
T  658321 caattttatttaggacactggtcttggttatccgacacgtgtcgtacaagtgtcatagaagtgtcggacaccgacacgtgtcggacactgcgacacg 658225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 214 - 276
Target Start/End: Complemental strand, 7694071 - 7694009
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcat 276  Q
    ||||||||||||||||||||||||||||| | ||| ||||||||| ||||||| | |||||||    
T  7694071 ttttcataagttatcctggagagtttatggaaataagctgaaaacaacttatgaacatgtcat 7694009  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 73 - 142
Target Start/End: Original strand, 2641448 - 2641517
Alignment:
Q  73 ttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgtcagataccgac 142  Q
    |||||||||||||  ||||||||||||| |||||||| |||| |||||||| |||||||| || ||||||    
T  2641448 ttatttaggacactagtcttagttgtccaacacgtgtcgtacgagtgtcattggagtgtccgacaccgac 2641517  T

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Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 55681019 - 55681088
Alignment:
Q  100 cgacacgtgttgtacaagtgtcataggagtgtcagataccgacacatgtcagacaccgcgacacggctag 169  Q
    ||||| |||| |||||||||||||||||||||| || |||||| | |||| |||||||||||||| ||||    
T  55681019 cgacatgtgtcgtacaagtgtcataggagtgtcggacaccgacgcgtgtcggacaccgcgacacgcctag 55681088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 27721726 - 27721790
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcataa 278  Q
    ||||||||||||||||||||||| ||  ||| ||| |||||||||  |||||||| |||||||||    
T  27721726 ttttcataagttatcctggagagcttgcgaaaataagctgaaaacagcttatggatatgtcataa 27721790  T

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Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 46019690 - 46019626
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcataa 278  Q
    |||||||||||||||| | |||| ||||||||||| | ||||||| ||||||  | |||||||||    
T  46019690 ttttcataagttatcccgaagagcttatgaatataagttgaaaacaacttatcaacatgtcataa 46019626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 57; Significance: 1e-23; HSPs: 11)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 68 - 196
Target Start/End: Complemental strand, 43921792 - 43921664
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgtcagataccgacacatgtcagacaccgcgacacggct 167  Q
    ||||||||| |||||||||| | |||||||||||||||||||   |||||||||||||||||||| || |||||  | |||| ||||||| |||||||||    
T  43921792 caattttatctaggacaccgattttagttgtccgacacgtgtcagacaagtgtcataggagtgtcggacaccgaagcgtgtcggacaccgtgacacggct 43921693  T
Q  168 agacccaattgtgtccgtgcttcatagct 196  Q
    || || |   |||||||||||||||||||    
T  43921692 agtcctagaggtgtccgtgcttcatagct 43921664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 70 - 135
Target Start/End: Complemental strand, 25092233 - 25092168
Alignment:
Q  70 attttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgtcaga 135  Q
    ||||||||||||||||| ||||| ||||||||||||||||||||| |||||||||| |||||||||    
T  25092233 attttatttaggacaccagtcttggttgtccgacacgtgttgtacgagtgtcatagaagtgtcaga 25092168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 70 - 169
Target Start/End: Original strand, 11411002 - 11411100
Alignment:
Q  70 attttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgtcagataccgacacatgtcagacaccgcgacacggctag 169  Q
    ||||||||||||||| || | |||||||||||||| ||||   |||||||||||||||||||| || | |||| | |||| ||| |||||||||||||||    
T  11411002 attttatttaggacatcgattttagttgtccgacatgtgtcagacaagtgtcataggagtgtcggaca-cgacgcgtgtcggactccgcgacacggctag 11411100  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 81 - 127
Target Start/End: Original strand, 27064021 - 27064067
Alignment:
Q  81 gacaccggtcttagttgtccgacacgtgttgtacaagtgtcatagga 127  Q
    |||||||||||||| |||||||||||||| ||| ||||||| |||||    
T  27064021 gacaccggtcttagctgtccgacacgtgtcgtataagtgtcttagga 27064067  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 10516013 - 10515952
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagt 129  Q
    |||||||||||| ||||| | | |||||||||| |||||| | | |||||||||||||||||    
T  10516013 caattttatttaagacactgattttagttgtccaacacgtatcggacaagtgtcataggagt 10515952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 17715687 - 17715626
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagt 129  Q
    ||||||||||||| ||| |  ||||||||||||||||||||| |||| || || ||||||||    
T  17715687 caattttatttagaacatcaatcttagttgtccgacacgtgtcgtacgagcgttataggagt 17715626  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 129
Target Start/End: Complemental strand, 19016916 - 19016855
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagt 129  Q
    ||||||||||||| ||| |  ||||||||||||||||||||| |||| || || ||||||||    
T  19016916 caattttatttagaacatcaatcttagttgtccgacacgtgtcgtacgagcgttataggagt 19016855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 98 - 163
Target Start/End: Original strand, 30121080 - 30121145
Alignment:
Q  98 tccgacacgtgttgtacaagtgtcataggagtgtcagataccgacacatgtcagacaccgcgacac 163  Q
    |||||||||||| ||||  || ||||||||||||||||||||||  | |||| || ||||||||||    
T  30121080 tccgacacgtgtcgtacgggtatcataggagtgtcagataccgatccgtgtcggataccgcgacac 30121145  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 213 - 266
Target Start/End: Complemental strand, 34414846 - 34414793
Alignment:
Q  213 attttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatg 266  Q
    ||||||||||  |||| ||||||||||||||| ||| ||||||||| |||||||    
T  34414846 attttcataaactatcatggagagtttatgaaaataagctgaaaacaacttatg 34414793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 49861267 - 49861308
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgt 109  Q
    |||||||||||||| |||| ||| ||||||||||||||||||    
T  49861267 caattttatttaggtcaccagtcctagttgtccgacacgtgt 49861308  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 13709884 - 13709820
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcataa 278  Q
    |||||||||| |||||||||||||||||  | |||  |||||||| |||||||||  ||||||||    
T  13709884 ttttcataagctatcctggagagtttattgaaataaactgaaaacaacttatggacttgtcataa 13709820  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 45; Significance: 2e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 32676493 - 32676429
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgtc 132  Q
    ||||||||||||||||| ||||| ||| ||||| |||||||| ||||||||||||||||||||||    
T  32676493 caattttatttaggacatcggtcatagctgtccaacacgtgtcgtacaagtgtcataggagtgtc 32676429  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 18543257 - 18543194
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcataa 278  Q
    |||||||||| |||||||||||| ||||||| ||| ||||||||| ||| ||||| |||||||||    
T  18543257 ttttcataagctatcctggagagcttatgaa-ataagctgaaaacaactcatggacatgtcataa 18543194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 10272492 - 10272428
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcataa 278  Q
    ||||||||||  ||| ||||||||||||||| ||| ||||||||| |||||  || |||||||||    
T  10272492 ttttcataagccatcttggagagtttatgaaaataagctgaaaacaacttacagacatgtcataa 10272428  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 13604910 - 13604846
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcataa 278  Q
    ||||||||||||||| || |||| ||||||| ||| | ||||||| || |||||| |||||||||    
T  13604910 ttttcataagttatcttgaagagcttatgaaaataagttgaaaacaacgtatggacatgtcataa 13604846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 45; Significance: 2e-16; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 48632432 - 48632368
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgtc 132  Q
    |||||||||||||||||||||||||||||||||||| |||||  ||| |||||||| ||||||||    
T  48632432 caattttatttaggacaccggtcttagttgtccgacgcgtgtcatacgagtgtcatgggagtgtc 48632368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 68 - 109
Target Start/End: Original strand, 127937 - 127978
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgt 109  Q
    |||||||||||||||||||||||||| |||||||||||||||    
T  127937 caattttatttaggacaccggtcttatttgtccgacacgtgt 127978  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 214 - 293
Target Start/End: Original strand, 35017585 - 35017664
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcataactcataagctgtttt 293  Q
    |||||||||| | |||||||||| ||||| | ||| | ||||||  ||||||||| ||||||||||||||| ||||||||    
T  35017585 ttttcataagctgtcctggagagcttatggaaataagttgaaaataacttatggacatgtcataactcataggctgtttt 35017664  T

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Target: chr1; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 70 - 164
Target Start/End: Complemental strand, 9148843 - 9148749
Alignment:
Q  70 attttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgtcagataccgacacatgtcagacaccgcgacacg 164  Q
    |||||||||| ||||||| |||| |||||| |||||||||||| | ||| |||||||||| || || || | ||| ||| ||||||| |||||||    
T  9148843 attttatttaagacaccgatctttgttgtctgacacgtgttgttcgagtttcataggagtatcggacactggcacgtgtaagacaccacgacacg 9148749  T

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Target: chr1; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 220 - 278
Target Start/End: Complemental strand, 35707253 - 35707195
Alignment:
Q  220 taagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcataa 278  Q
    |||||||||||| |||| ||||||| ||||||||||||| |||| |||  |||||||||    
T  35707253 taagttatcctgtagagcttatgaaaatatgctgaaaacaacttgtgggcatgtcataa 35707195  T

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Target: chr1; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 217 - 266
Target Start/End: Original strand, 4025096 - 4025145
Alignment:
Q  217 tcataagttatcctggagagtttatgaatatatgctgaaaaccacttatg 266  Q
    |||||||||||||||||||||| ||| | ||| ||||||||| |||||||    
T  4025096 tcataagttatcctggagagttaatggaaataagctgaaaacaacttatg 4025145  T

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Target: chr1; HSP #7
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 23432190 - 23432251
Alignment:
Q  71 ttttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgtc 132  Q
    ||||||||| || |||| | |||||||| |||||||||| | |||| |||||||||||||||    
T  23432190 ttttatttaagataccgattttagttgttcgacacgtgtcggacaaatgtcataggagtgtc 23432251  T

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Target: chr1; HSP #8
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 71 - 132
Target Start/End: Original strand, 23636282 - 23636343
Alignment:
Q  71 ttttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgtc 132  Q
    |||||||||| ||||  || | |||||||||||||||||  ||| |||||||||||||||||    
T  23636282 ttttatttagcacacttgtttgagttgtccgacacgtgtcttacgagtgtcataggagtgtc 23636343  T

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Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 273
Target Start/End: Original strand, 6279407 - 6279467
Alignment:
Q  213 attttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgt 273  Q
    ||||||||||| |||||| ||||| ||||| | ||| ||||||||| ||||||||| ||||    
T  6279407 attttcataagctatcctagagagcttatggaaatacgctgaaaacaacttatggacatgt 6279467  T

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Target: chr2 (Bit Score: 43; Significance: 0.000000000000003; HSPs: 8)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 69 - 131
Target Start/End: Complemental strand, 15989912 - 15989850
Alignment:
Q  69 aattttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgt 131  Q
    |||||||||||||||| ||||||||||||||||||| |||| |||  ||||||||||||||||    
T  15989912 aattttatttaggacatcggtcttagttgtccgacatgtgtcgtaagagtgtcataggagtgt 15989850  T

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Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 106 - 193
Target Start/End: Original strand, 17651594 - 17651681
Alignment:
Q  106 gtgttgtacaagtgtcataggagtgtcagataccgacacatgtcagacaccgcgacacggctagacccaattgtgtccgtgcttcata 193  Q
    ||||||||||||||||||| ||||||| || || ||| | |||| |||||||||||||| |||  || ||  ||||||||||||||||    
T  17651594 gtgttgtacaagtgtcataagagtgtcggacactgacgcgtgtcggacaccgcgacacgcctaatcctaaaggtgtccgtgcttcata 17651681  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 215 - 278
Target Start/End: Original strand, 33192212 - 33192275
Alignment:
Q  215 tttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcataa 278  Q
    ||||||||| |||||||||||| |||| |||||| |||||||||  |||||||| |||||||||    
T  33192212 tttcataagctatcctggagagcttataaatataagctgaaaacagcttatggatatgtcataa 33192275  T

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Target: chr2; HSP #4
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 214 - 260
Target Start/End: Original strand, 24097817 - 24097863
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaacca 260  Q
    ||||||||||||||||||||||| ||||||| ||| |||||||||||    
T  24097817 ttttcataagttatcctggagagcttatgaaaataagctgaaaacca 24097863  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 261 - 298
Target Start/End: Original strand, 43489791 - 43489828
Alignment:
Q  261 cttatggaaatgtcataactcataagctgttttcataa 298  Q
    |||||||| ||||||||||||||||||| |||||||||    
T  43489791 cttatggatatgtcataactcataagctattttcataa 43489828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 4747926 - 4747862
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgtc 132  Q
    ||||||||||| ||| ||  | |||||||||||||||| ||  ||||||||||||||||| ||||    
T  4747926 caattttatttgggatacttgccttagttgtccgacacatgccgtacaagtgtcataggattgtc 4747862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 213 - 277
Target Start/End: Complemental strand, 9530790 - 9530726
Alignment:
Q  213 attttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcata 277  Q
    ||||||||||| |||||||||||| |||||||  || ||| ||||  ||||||||| ||||||||    
T  9530790 attttcataagctatcctggagagcttatgaaagtaagctaaaaataacttatggacatgtcata 9530726  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 278
Target Start/End: Complemental strand, 43065511 - 43065447
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcataa 278  Q
    ||||||||||||||| ||||||| ||||  | ||| ||||||||| | ||||||| |||||||||    
T  43065511 ttttcataagttatcgtggagagcttattgaaataagctgaaaacaatttatggacatgtcataa 43065447  T

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Target: chr8 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 8)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 68 - 132
Target Start/End: Complemental strand, 15850311 - 15850247
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgttgtacaagtgtcataggagtgtc 132  Q
    |||||||||||||||||||| | ||||||||| || |||||| |||| |||||||||||||||||    
T  15850311 caattttatttaggacaccgattttagttgtctgatacgtgtcgtacgagtgtcataggagtgtc 15850247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 68 - 109
Target Start/End: Complemental strand, 18602918 - 18602877
Alignment:
Q  68 caattttatttaggacaccggtcttagttgtccgacacgtgt 109  Q
    |||||||||||||||||||| | |||||||||||||||||||    
T  18602918 caattttatttaggacaccgattttagttgtccgacacgtgt 18602877  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 213 - 278
Target Start/End: Complemental strand, 25869328 - 25869263
Alignment:
Q  213 attttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcataa 278  Q
    ||||||||| | |||| ||||||||||||| | ||| ||||||||| ||||||||| |||||||||    
T  25869328 attttcataggctatcatggagagtttatggaaataagctgaaaacaacttatggacatgtcataa 25869263  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 93 - 193
Target Start/End: Original strand, 31772776 - 31772876
Alignment:
Q  93 agttgtccgacacgtgttgtacaagtgtcataggagtgtcagataccgacacatgtcagacaccgcgacacggctagacccaattgtgtccgtgcttcat 192  Q
    |||||||||||||||||  |||||||||||||| |||||  || | |||||| |||| |||||| |||| || || | || ||  |||||||||||||||    
T  31772776 agttgtccgacacgtgtcatacaagtgtcatagcagtgttggacatcgacacgtgtcggacaccacgacgcgcctggtcctaaaggtgtccgtgcttcat 31772875  T
Q  193 a 193  Q
    |    
T  31772876 a 31772876  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 32; E-Value: 0.000000009
Query Start/End: Original strand, 100 - 155
Target Start/End: Complemental strand, 18393388 - 18393333
Alignment:
Q  100 cgacacgtgttgtacaagtgtcataggagtgtcagataccgacacatgtcagacac 155  Q
    |||||||||| |||| |||||||||||||||||  | ||| |||||||||||||||    
T  18393388 cgacacgtgtcgtacgagtgtcataggagtgtcgaacacctacacatgtcagacac 18393333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 267
Target Start/End: Complemental strand, 30277306 - 30277253
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatgg 267  Q
    |||||||||| |||||| ||||||||||| | ||| ||||||||| ||||||||    
T  30277306 ttttcataagctatcctagagagtttatggaaataagctgaaaacaacttatgg 30277253  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 20672759 - 20672823
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcataa 278  Q
    |||| ||||| |||||||||||| ||||||| ||| |||||||||  |||||| | |||||||||    
T  20672759 tttttataagctatcctggagagcttatgaaaataagctgaaaacagcttatgaacatgtcataa 20672823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Original strand, 31862502 - 31862546
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaac 258  Q
    ||||||||||||||||| ||||| ||||||| ||| |||||||||    
T  31862502 ttttcataagttatcctagagagcttatgaaaataagctgaaaac 31862546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 38; Significance: 0.000000000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 100 - 169
Target Start/End: Original strand, 34013819 - 34013888
Alignment:
Q  100 cgacacgtgttgtacaagtgtcataggagtgtcagataccgacacatgtcagacaccgcgacacggctag 169  Q
    |||||||||| ||||||||||||| |||||||| || |||||| | |||| |||||||||||||| ||||    
T  34013819 cgacacgtgtcgtacaagtgtcattggagtgtcggacaccgacgcttgtcggacaccgcgacacgcctag 34013888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 216 - 278
Target Start/End: Original strand, 34939755 - 34939817
Alignment:
Q  216 ttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcataa 278  Q
    |||||||| |||||||||||||||||| | ||| ||||||||| | ||||||| |||||||||    
T  34939755 ttcataagctatcctggagagtttatggaaataagctgaaaacaatttatggacatgtcataa 34939817  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 100 - 169
Target Start/End: Complemental strand, 34011031 - 34010962
Alignment:
Q  100 cgacacgtgttgtacaagtgtcataggagtgtcagataccgacacatgtcagacaccgcgacacggctag 169  Q
    |||||||||| | ||||||||||| |||||||| || |||||| | |||| |||||||||||||| ||||    
T  34011031 cgacacgtgtcgcacaagtgtcattggagtgtcggacaccgacgcgtgtcggacaccgcgacacgcctag 34010962  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 95 - 164
Target Start/End: Complemental strand, 33234737 - 33234668
Alignment:
Q  95 ttgtccgacacgtgttgtacaagtgtcataggagtgtcagataccgacacatgtcagacaccgcgacacg 164  Q
    |||||| |||||||| |||| |||||| |||  ||||| || |||||| |||||| ||||||||||||||    
T  33234737 ttgtccaacacgtgtcgtacgagtgtcttagatgtgtccgacaccgacgcatgtcggacaccgcgacacg 33234668  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 278
Target Start/End: Original strand, 30782140 - 30782204
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaaccacttatggaaatgtcataa 278  Q
    |||| |||||||||| ||||||||||||| |||||  |||||||| |||||| ||  ||||||||    
T  30782140 tttttataagttatcatggagagtttatggatataatctgaaaactacttatagacgtgtcataa 30782204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 214 - 258
Target Start/End: Complemental strand, 32386624 - 32386580
Alignment:
Q  214 ttttcataagttatcctggagagtttatgaatatatgctgaaaac 258  Q
    ||||||| ||||||||||||||| ||||||| ||| |||||||||    
T  32386624 ttttcattagttatcctggagagcttatgaaaataagctgaaaac 32386580  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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