View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11618_high_13 (Length: 289)
Name: NF11618_high_13
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11618_high_13 |
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Alignment Details
Target: chr3 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 17 - 281
Target Start/End: Complemental strand, 26884580 - 26884316
Alignment:
| Q |
17 |
aacaacaatgtcttcagagaagctcagagtccccatagccatcacgactctcagagcctctctgatgaatctccaccaccatgttcaccgccgtcaatga |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |
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| T |
26884580 |
aacaacaatgtcttcagagaagctcagagtccccatagccatcacgactctcagagcctctctgatgaatctccaccaccatgttcaccgtcgtcaatgg |
26884481 |
T |
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| Q |
117 |
accgaactcatagaccgtagcaccatctccattccagaatcactcacggaagcnnnnnnncgaatccggaagaatgtttactacttccgcatcaattaca |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||| |
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| T |
26884480 |
accgaactcatagaccgtagcaccatctccattccagaatcactcacggaagcctttttccgaatccggaagaacatttactacttccgaatcaattaca |
26884381 |
T |
|
| Q |
217 |
tcattgtgttaacgttggttctcgcagtgttcctcctctcgcgtcctctttcactccttcttctc |
281 |
Q |
| |
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||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
26884380 |
tcattgtgttaacgttggttctcgcagcgttcctcctctcgcgtcctctttcactccttcttctc |
26884316 |
T |
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