View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11618_high_19 (Length: 229)

Name: NF11618_high_19
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11618_high_19
NF11618_high_19
[»] chr4 (1 HSPs)
chr4 (1-37)||(41920758-41920794)
[»] chr5 (1 HSPs)
chr5 (1-36)||(28550818-28550853)
[»] chr7 (1 HSPs)
chr7 (1-31)||(18891539-18891569)
[»] chr8 (1 HSPs)
chr8 (1-33)||(15719650-15719682)
[»] chr6 (1 HSPs)
chr6 (1-33)||(12298816-12298848)
[»] chr2 (1 HSPs)
chr2 (1-37)||(29859477-29859513)


Alignment Details
Target: chr4 (Bit Score: 33; Significance: 0.000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 41920794 - 41920758
Alignment:
Q  1 tgcagggactaaaaccatattttaaccaaaatttaaa 37  Q
    ||||||||||||||||||||||||||||| |||||||    
T  41920794 tgcagggactaaaaccatattttaaccaagatttaaa 41920758  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 1 - 36
Target Start/End: Complemental strand, 28550853 - 28550818
Alignment:
Q  1 tgcagggactaaaaccatattttaaccaaaatttaa 36  Q
    |||||||||||||||||||||||| |||||||||||    
T  28550853 tgcagggactaaaaccatattttagccaaaatttaa 28550818  T

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Target: chr7 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 31
Target Start/End: Original strand, 18891539 - 18891569
Alignment:
Q  1 tgcagggactaaaaccatattttaaccaaaa 31  Q
    |||||||||||||||||||||||||||||||    
T  18891539 tgcagggactaaaaccatattttaaccaaaa 18891569  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 15719682 - 15719650
Alignment:
Q  1 tgcagggactaaaaccatattttaaccaaaatt 33  Q
    |||||||||||||||||||||||| ||||||||    
T  15719682 tgcagggactaaaaccatattttagccaaaatt 15719650  T

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Target: chr6 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 33
Target Start/End: Complemental strand, 12298848 - 12298816
Alignment:
Q  1 tgcagggactaaaaccatattttaaccaaaatt 33  Q
    ||||||||| |||||||||||||||||||||||    
T  12298848 tgcagggaccaaaaccatattttaaccaaaatt 12298816  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 1 - 37
Target Start/End: Complemental strand, 29859513 - 29859477
Alignment:
Q  1 tgcagggactaaaaccatattttaaccaaaatttaaa 37  Q
    ||||||||| |||||||||||||||||||| ||||||    
T  29859513 tgcagggaccaaaaccatattttaaccaaattttaaa 29859477  T

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