View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11618_high_20 (Length: 219)
Name: NF11618_high_20
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11618_high_20 |
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Alignment Details
Target: chr5 (Bit Score: 171; Significance: 5e-92; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 171; E-Value: 5e-92
Query Start/End: Original strand, 16 - 202
Target Start/End: Original strand, 9439850 - 9440036
Alignment:
| Q |
16 |
tgaatatatatgactttgacaaagatattagttatggttgtggttatattgcttaaattgggtaaagtaatgtataataaattatgtcgtggtgtgcttt |
115 |
Q |
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| T |
9439850 |
tgaatatatataactttgacaaagatattatgtatggttgtggttatattgcttaaattgggtaaagtaatgtataataaaatatgtcgtggtgtgcttt |
9439949 |
T |
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| Q |
116 |
tctaaatatttaattttcgagttcttttgatgtaaatttatgtgagctaattcataaataggctctctcaacctctctatcacatat |
202 |
Q |
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| T |
9439950 |
tctaaatatttaattttcgagttcttttgatgtaaatttatgtgagctaattcataaataggctctctcaacctctctatcacatat |
9440036 |
T |
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