View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11618_high_9 (Length: 328)
Name: NF11618_high_9
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11618_high_9 |
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| [»] scaffold0009 (1 HSPs) |
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Alignment Details
Target: chr3 (Bit Score: 259; Significance: 1e-144; HSPs: 4)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 259; E-Value: 1e-144
Query Start/End: Original strand, 13 - 323
Target Start/End: Original strand, 41415600 - 41415910
Alignment:
| Q |
13 |
atcttagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaagg |
112 |
Q |
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|||| ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||| |
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| T |
41415600 |
atctaagggggcgtttgtttcccctctacaaaataagttcctgggaatgtaagatgggaactatttattgcaatgtttggtacacatgcatacaaaaagg |
41415699 |
T |
|
| Q |
113 |
ttccaaggaattaattatacccggtaattatttttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaa |
212 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
41415700 |
ttccaaggaattaattatacccggtaattatttttaactatattctcccattttttattcccagcacaaaggatgggaatgacttattcccagcggttaa |
41415799 |
T |
|
| Q |
213 |
catccattaatatctgaaaagttcatttctaccccttgtaaccgcatgacatcccacgtttctccctacttatgtgtcacgttttctttttgtctttgca |
312 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||| |||||||||| |||||||| || |
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| T |
41415800 |
catccattaatatctcaaaagttcatttctaccccttgtaaccgcatggcatcccacgtttctacctacttatgtgttacgttttcttcttgtctttaca |
41415899 |
T |
|
| Q |
313 |
caggttctgct |
323 |
Q |
| |
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|||||| |||| |
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| T |
41415900 |
caggttttgct |
41415910 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 78; E-Value: 3e-36
Query Start/End: Original strand, 20 - 141
Target Start/End: Complemental strand, 55448037 - 55447916
Alignment:
| Q |
20 |
ggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaag |
119 |
Q |
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| T |
55448037 |
ggggcgtttgtttcacttctacaaaataagtttctgagaatgtaagataggaactatttattccaatgtttgatacacatgcataaaaaaaggttataag |
55447938 |
T |
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| Q |
120 |
gaattaattatacccggtaatt |
141 |
Q |
| |
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|||||||||||||||||||||| |
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| T |
55447937 |
gaattaattatacccggtaatt |
55447916 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 128 - 323
Target Start/End: Complemental strand, 55447896 - 55447702
Alignment:
| Q |
128 |
tatacccggtaattatttttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaacatccatt-aatatc |
226 |
Q |
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|||||||| |||||||||| |||||| |||||||||||| ||||||| | |||||||||||||| ||||||||||||||||||||||||||| ||| || |
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| T |
55447896 |
tatacccgataattattttcaactat--tatcccattttttattcccaacccaaaggatgggaatcacttattcccagcggttaacatccattaaatgtc |
55447799 |
T |
|
| Q |
227 |
tgaaaagttcatttctacccctt--gtaaccgcatgacatcccacgtttctccctacttatgtgtcacgttttctttttgtctttgcacaggttctgct |
323 |
Q |
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|||| ||||||||||||| || ||||| |||| || ||||||| ||| |||| ||||||| ||||||||||| || |||| |||||||| |||| |
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| T |
55447798 |
acaaaatttcatttctaccctttaagtaactgcat--caccccacgtctctgcctatttatgtgccacgttttcttcctgcctttacacaggttttgct |
55447702 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 18 - 123
Target Start/End: Original strand, 24565335 - 24565440
Alignment:
| Q |
18 |
agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttcca |
117 |
Q |
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|||||| ||||||||| ||||| |||||| ||||| ||||| ||||||||||| |||||||||| |||||||| | ||||||||||||||| ||||| |
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| T |
24565335 |
agggggtgtttgtttcacctctgtaaattagattcctaggaatctaagatgggaattatttattcctatgtttggtatacatgcatacaaaaatattcca |
24565434 |
T |
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| Q |
118 |
aggaat |
123 |
Q |
| |
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|||||| |
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| T |
24565435 |
aggaat |
24565440 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 198; Significance: 1e-108; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 45 - 323
Target Start/End: Complemental strand, 41418503 - 41418229
Alignment:
| Q |
45 |
ttaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaaggaattaattatacccggtaattatt |
144 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||| |||||||||||| |
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| T |
41418503 |
ttaagttcctgggaatgtaagatgggaactatttattccaatatttggtacacatgcatacaaaaaggttccaagaaattaattatatccggtaattatt |
41418404 |
T |
|
| Q |
145 |
tttaactatattatcccatttttaattcccagcacaaaggatgggaatgacttattcccagcggttaacatccattaatatctgaaaagttcatttctac |
244 |
Q |
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||||||||||||||||||| ||| ||||||| || ||||||||||||||||||||||| ||| |||||||||||||||||||| |||||||||||||||| |
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| T |
41418403 |
tttaactatattatcccatattttattcccaacagaaaggatgggaatgacttattccaagcagttaacatccattaatatctcaaaagttcatttctac |
41418304 |
T |
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| Q |
245 |
cccttgtaaccgcatgacatcccacgtttctccctacttatgtgtcacgttttctttttgtctttgcacaggttctgct |
323 |
Q |
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|||||||||||||||| |||||||| ||| |||||||||||||||||||||||||||||||| || ||||| |||| |
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| T |
41418303 |
cccttgtaaccgcatggcatcccacattt----ctacttatgtgtcacgttttctttttgtctttacataggttttgct |
41418229 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 45355251 - 45355342
Alignment:
| Q |
39 |
tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaaggaattaattat |
130 |
Q |
| |
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|||||||| | |||| ||||| ||||||||||| |||||||||| |||||||| | ||||||| ||||||| ||||||||||| |||||| |
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| T |
45355251 |
tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccaaggaatgaattat |
45355342 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 40; E-Value: 0.0000000000001
Query Start/End: Original strand, 39 - 130
Target Start/End: Original strand, 45368992 - 45369083
Alignment:
| Q |
39 |
tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaaggaattaattat |
130 |
Q |
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|||||||| | |||| ||||| ||||||||||| |||||||||| |||||||| | ||||||| ||||||| ||||||||||| |||||| |
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| T |
45368992 |
tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccaaggaatgaattat |
45369083 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 35 - 134
Target Start/End: Original strand, 49525807 - 49525906
Alignment:
| Q |
35 |
cctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaaggaattaattataccc |
134 |
Q |
| |
|
|||||||||| |||||||| |||||||||||||||| |||||| || ||||||| | |||| | ||||||| ||| |||||||||||||||||| |
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| T |
49525807 |
cctctacaaactaagttcccaagaatgtaagatgggaaatatttactcacatgtttgatatacatatacacaaaaacattctaaggaattaattataccc |
49525906 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0009 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: scaffold0009
Description:
Target: scaffold0009; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 17 - 123
Target Start/End: Complemental strand, 18902 - 18796
Alignment:
| Q |
17 |
tagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttcc |
116 |
Q |
| |
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||||||| ||||||||| ||||| |||||| ||||| ||||| |||| |||||| |||||||||| |||||||| | ||||||||||||||| ||| |
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| T |
18902 |
tagggggtgtttgtttcacctctgtaaattagattcctaggaatctaaggtgggaattatttattcctatgtttggtatacatgcatacaaaaatattca |
18803 |
T |
|
| Q |
117 |
aaggaat |
123 |
Q |
| |
|
||||||| |
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|
| T |
18802 |
aaggaat |
18796 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 42; Significance: 0.000000000000008; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 42; E-Value: 0.000000000000008
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 6813479 - 6813374
Alignment:
| Q |
18 |
agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttcca |
117 |
Q |
| |
|
|||||| ||||||||| ||||| |||||| ||||| ||||| ||||||| ||| |||||||||| |||||||| | ||||||||||||||| || || |
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| T |
6813479 |
agggggtgtttgtttcacctctgtaaattagattcctaggaatctaagatgagaattatttattcctatgtttggtatacatgcatacaaaaatatttca |
6813380 |
T |
|
| Q |
118 |
aggaat |
123 |
Q |
| |
|
|||||| |
|
|
| T |
6813379 |
aggaat |
6813374 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 25 - 123
Target Start/End: Complemental strand, 46194119 - 46194021
Alignment:
| Q |
25 |
gtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaaggaat |
123 |
Q |
| |
|
||||||||| ||||| |||||| ||| | ||||| ||||||||||| ||||||||| |||||||| | ||||||||||||||| ||||||||||| |
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| T |
46194119 |
gtttgtttcacctctgtaaattagattcttaggaatctaagatgggaattatttattcttatgtttggtatacatgcatacaaaaatattccaaggaat |
46194021 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 18 - 123
Target Start/End: Complemental strand, 36366969 - 36366864
Alignment:
| Q |
18 |
agggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttcca |
117 |
Q |
| |
|
|||||| ||||||||| |||| |||||| ||||| ||||| ||||||| ||| |||||||||| |||||||| | ||||||||||||||| || || |
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| T |
36366969 |
agggggtgtttgtttcacctcagtaaattagattcctaggaatctaagatgagaattatttattcctatgtttggtatacatgcatacaaaaatatttca |
36366870 |
T |
|
| Q |
118 |
aggaat |
123 |
Q |
| |
|
|||||| |
|
|
| T |
36366869 |
aggaat |
36366864 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 39 - 136
Target Start/End: Complemental strand, 17902338 - 17902241
Alignment:
| Q |
39 |
tacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaaggaattaattatacccgg |
136 |
Q |
| |
|
|||||||| | |||| ||||| ||||||||||| |||||||||| |||||||| | ||||||| ||||||| ||||| ||||| |||||| ||||| |
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| T |
17902338 |
tacaaattgaattcccaggaatctaagatgggaattatttattcccatgtttggtagacatgcacacaaaaatattccagggaatgaattattcccgg |
17902241 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 37; Significance: 0.000000000008; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 16 - 102
Target Start/End: Original strand, 7968369 - 7968452
Alignment:
| Q |
16 |
ttagggggcgtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgca |
102 |
Q |
| |
|
|||||||||||||||||| ||| |||||||||| |||| |||| ||||||||||| ||||||||| ||||||| ||||||||| |
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|
| T |
7968369 |
ttagggggcgtttgtttcacctatacaaattaaattcc---gaatctaagatgggaataatttattcccatgtttgatacacatgca |
7968452 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 32; Significance: 0.000000007; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 25 - 130
Target Start/End: Original strand, 8037860 - 8037962
Alignment:
| Q |
25 |
gtttgtttcccctctacaaattaagttcctgggaatgtaagatgggaactatttattccaatgtttggaacacatgcatacaaaaaggttccaaggaatt |
124 |
Q |
| |
|
||||||||| |||| | ||||| | |||| ||||| ||||||||||| |||||||| |||||||| | ||||||| ||||||| || ||||||||| |
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|
| T |
8037860 |
gtttgtttcacctccaaaaatttaattcccaggaatttaagatgggaa---tttattcccatgtttggcagacatgcacacaaaaatatttcaaggaatt |
8037956 |
T |
|
| Q |
125 |
aattat |
130 |
Q |
| |
|
|||||| |
|
|
| T |
8037957 |
aattat |
8037962 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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