View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11618_low_1 (Length: 672)

Name: NF11618_low_1
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11618_low_1
NF11618_low_1
[»] chr3 (43 HSPs)
chr3 (390-660)||(24619325-24619595)
chr3 (22-217)||(24618788-24618983)
chr3 (280-391)||(24619092-24619203)
chr3 (75-242)||(1923117-1923278)
chr3 (78-236)||(46194123-46194280)
chr3 (112-242)||(1334732-1334861)
chr3 (78-243)||(38600723-38600887)
chr3 (106-241)||(44218979-44219112)
chr3 (90-213)||(36790750-36790872)
chr3 (116-242)||(48409611-48409738)
chr3 (78-235)||(51164986-51165142)
chr3 (78-169)||(30261420-30261509)
chr3 (129-236)||(41287295-41287402)
chr3 (78-205)||(26479785-26479918)
chr3 (116-169)||(9218244-9218297)
chr3 (116-241)||(21296458-21296582)
chr3 (111-243)||(9017827-9017958)
chr3 (78-170)||(17776911-17777002)
chr3 (78-170)||(19078212-19078303)
chr3 (116-236)||(39329705-39329824)
chr3 (108-171)||(2868672-2868734)
chr3 (133-235)||(54021429-54021531)
chr3 (113-241)||(54122176-54122303)
chr3 (84-158)||(39144770-39144845)
chr3 (114-237)||(53051058-53051180)
chr3 (132-235)||(53754034-53754137)
chr3 (78-236)||(5245445-5245602)
chr3 (78-156)||(36315651-36315729)
chr3 (132-222)||(38524263-38524352)
chr3 (95-236)||(32977724-32977864)
chr3 (78-135)||(38215761-38215818)
chr3 (78-242)||(21585327-21585490)
chr3 (116-243)||(42547061-42547187)
chr3 (108-171)||(51636843-51636905)
chr3 (95-133)||(26832197-26832235)
chr3 (84-146)||(34081017-34081079)
chr3 (112-197)||(39866504-39866588)
chr3 (116-241)||(43639471-43639595)
chr3 (106-151)||(47684858-47684903)
chr3 (108-175)||(11529023-11529092)
chr3 (96-136)||(12745094-12745134)
chr3 (155-243)||(31650937-31651024)
chr3 (186-242)||(45819676-45819732)
[»] chr1 (74 HSPs)
chr1 (76-242)||(29756057-29756223)
chr1 (78-243)||(26583754-26583919)
chr1 (113-242)||(37541065-37541194)
chr1 (78-242)||(24131318-24131481)
chr1 (78-236)||(26924037-26924195)
chr1 (311-391)||(29051305-29051385)
chr1 (78-221)||(3160604-3160747)
chr1 (396-496)||(29051074-29051174)
chr1 (83-236)||(46363332-46363486)
chr1 (77-227)||(50926789-50926939)
chr1 (112-236)||(5503453-5503575)
chr1 (78-242)||(29225322-29225489)
chr1 (111-236)||(37925192-37925321)
chr1 (83-236)||(40754336-40754488)
chr1 (111-227)||(16956585-16956701)
chr1 (78-236)||(34813950-34814107)
chr1 (78-236)||(27932746-27932908)
chr1 (78-242)||(4466072-4466235)
chr1 (84-164)||(26760381-26760461)
chr1 (108-242)||(16040104-16040237)
chr1 (139-236)||(31798451-31798546)
chr1 (89-236)||(3718779-3718924)
chr1 (78-241)||(11425787-11425949)
chr1 (83-212)||(14090697-14090822)
chr1 (133-239)||(36232761-36232867)
chr1 (78-158)||(2886323-2886403)
chr1 (112-236)||(10587533-10587656)
chr1 (92-235)||(25983565-25983702)
chr1 (114-236)||(27209921-27210042)
chr1 (115-236)||(705303-705424)
chr1 (77-213)||(36326122-36326257)
chr1 (78-241)||(2219366-2219528)
chr1 (113-232)||(13409730-13409849)
chr1 (114-213)||(28706577-28706675)
chr1 (96-243)||(32348244-32348390)
chr1 (133-242)||(14352593-14352705)
chr1 (114-171)||(4659529-4659585)
chr1 (133-237)||(37495861-37495963)
chr1 (108-236)||(27391380-27391507)
chr1 (106-162)||(34332217-34332272)
chr1 (116-236)||(40061842-40061961)
chr1 (113-169)||(40988450-40988506)
chr1 (111-171)||(49494114-49494173)
chr1 (108-220)||(49944981-49945092)
chr1 (113-237)||(50267391-50267514)
chr1 (133-237)||(51049540-51049643)
chr1 (106-169)||(7224500-7224563)
chr1 (40-79)||(29051382-29051421)
chr1 (78-243)||(29225779-29225942)
chr1 (153-236)||(33149306-33149389)
chr1 (111-227)||(44580558-44580676)
chr1 (125-235)||(45889212-45889322)
chr1 (113-214)||(50773301-50773399)
chr1 (178-236)||(2886204-2886262)
chr1 (113-235)||(21304760-21304880)
chr1 (133-227)||(9590554-9590650)
chr1 (108-197)||(40019831-40019919)
chr1 (112-236)||(32587798-32587921)
chr1 (111-171)||(36467146-36467205)
chr1 (108-243)||(28839365-28839499)
chr1 (108-170)||(5040523-5040584)
chr1 (113-171)||(5442438-5442495)
chr1 (112-174)||(6787342-6787403)
chr1 (135-237)||(12267605-12267707)
chr1 (108-169)||(25418743-25418802)
chr1 (106-163)||(39420692-39420750)
chr1 (116-161)||(2571469-2571514)
chr1 (105-150)||(18186142-18186187)
chr1 (115-243)||(27831872-27831997)
chr1 (111-175)||(37525134-37525195)
chr1 (115-163)||(28424279-28424327)
chr1 (108-171)||(42309528-42309589)
chr1 (158-234)||(46968113-46968189)
chr1 (111-239)||(52830365-52830492)
[»] chr8 (51 HSPs)
chr8 (78-242)||(14689987-14690151)
chr8 (89-236)||(8394180-8394329)
chr8 (78-236)||(33743809-33743967)
chr8 (78-236)||(14748620-14748780)
chr8 (78-213)||(32231302-32231437)
chr8 (111-234)||(45420888-45421011)
chr8 (111-227)||(1494197-1494313)
chr8 (96-236)||(25174519-25174659)
chr8 (457-615)||(1344916-1345072)
chr8 (96-242)||(5392076-5392221)
chr8 (111-236)||(886397-886522)
chr8 (89-242)||(8566041-8566191)
chr8 (116-243)||(2195494-2195620)
chr8 (89-236)||(39998196-39998342)
chr8 (108-243)||(42412330-42412464)
chr8 (114-235)||(29638335-29638455)
chr8 (133-241)||(14117490-14117598)
chr8 (78-236)||(29451382-29451540)
chr8 (114-237)||(28791340-28791462)
chr8 (116-235)||(40077705-40077823)
chr8 (107-236)||(27868271-27868399)
chr8 (84-237)||(27973609-27973761)
chr8 (84-237)||(28030878-28031030)
chr8 (112-227)||(9734119-9734232)
chr8 (78-169)||(2797139-2797230)
chr8 (108-243)||(7258314-7258448)
chr8 (81-151)||(8840445-8840514)
chr8 (117-235)||(15559086-15559203)
chr8 (88-242)||(37459377-37459521)
chr8 (73-237)||(41726553-41726714)
chr8 (78-169)||(36011909-36012001)
chr8 (335-382)||(1354159-1354206)
chr8 (106-184)||(325028-325105)
chr8 (111-237)||(29615830-29615955)
chr8 (139-237)||(41759607-41759705)
chr8 (78-167)||(2875005-2875094)
chr8 (119-236)||(5423122-5423238)
chr8 (115-227)||(26677115-26677227)
chr8 (112-236)||(139055-139178)
chr8 (101-236)||(11637173-11637308)
chr8 (108-171)||(37703085-37703147)
chr8 (133-236)||(5878196-5878300)
chr8 (111-193)||(12653763-12653844)
chr8 (118-236)||(28802800-28802917)
chr8 (156-236)||(325110-325190)
chr8 (311-343)||(1354105-1354137)
chr8 (126-162)||(10728885-10728921)
chr8 (105-149)||(33890478-33890522)
chr8 (108-160)||(36649664-36649715)
chr8 (125-173)||(44225885-44225933)
chr8 (113-237)||(44790374-44790497)
[»] chr4 (52 HSPs)
chr4 (78-242)||(28330821-28330985)
chr4 (89-237)||(8759811-8759959)
chr4 (78-242)||(20964204-20964368)
chr4 (78-242)||(37315838-37316002)
chr4 (115-236)||(38319944-38320065)
chr4 (89-236)||(32949775-32949923)
chr4 (112-242)||(42132840-42132972)
chr4 (111-236)||(49218732-49218856)
chr4 (92-236)||(53848679-53848823)
chr4 (112-236)||(48400582-48400705)
chr4 (112-236)||(22020462-22020584)
chr4 (78-239)||(25902378-25902539)
chr4 (78-169)||(5499349-5499440)
chr4 (78-197)||(54217441-54217562)
chr4 (78-236)||(22872303-22872462)
chr4 (133-242)||(42051627-42051736)
chr4 (92-163)||(18872585-18872656)
chr4 (105-236)||(47277625-47277756)
chr4 (96-236)||(4360343-4360482)
chr4 (78-178)||(41594764-41594864)
chr4 (96-243)||(33047518-33047664)
chr4 (113-236)||(34790903-34791026)
chr4 (95-236)||(39052835-39052975)
chr4 (76-240)||(28279866-28280029)
chr4 (116-236)||(41436514-41436633)
chr4 (84-160)||(46958828-46958904)
chr4 (96-171)||(8295127-8295201)
chr4 (114-237)||(29550680-29550802)
chr4 (108-243)||(41203763-41203897)
chr4 (105-150)||(36045994-36046039)
chr4 (108-236)||(49448874-49448999)
chr4 (113-169)||(13529961-13530017)
chr4 (96-243)||(42024136-42024282)
chr4 (178-236)||(36047116-36047174)
chr4 (84-141)||(11583647-11583704)
chr4 (108-243)||(40020892-40021029)
chr4 (108-164)||(12619792-12619847)
chr4 (108-236)||(17237076-17237203)
chr4 (108-236)||(38160099-38160226)
chr4 (186-237)||(10099749-10099800)
chr4 (84-243)||(35027420-35027578)
chr4 (133-236)||(35998088-35998191)
chr4 (108-243)||(41710091-41710225)
chr4 (113-151)||(1920846-1920884)
chr4 (116-241)||(25149479-25149604)
chr4 (115-236)||(54729434-54729558)
chr4 (132-233)||(13719811-13719912)
chr4 (138-235)||(49306621-49306718)
chr4 (126-239)||(49401686-49401798)
chr4 (115-171)||(28974404-28974459)
chr4 (106-151)||(38838740-38838787)
chr4 (107-171)||(52676977-52677040)
[»] chr2 (49 HSPs)
chr2 (78-242)||(13222095-13222259)
chr2 (78-241)||(314455-314618)
chr2 (83-236)||(6972462-6972614)
chr2 (78-236)||(4282934-4283093)
chr2 (89-227)||(928466-928603)
chr2 (112-236)||(2048325-2048448)
chr2 (112-243)||(43950399-43950529)
chr2 (112-237)||(9724910-9725034)
chr2 (71-242)||(37528981-37529151)
chr2 (108-242)||(2427387-2427521)
chr2 (107-242)||(38872867-38873000)
chr2 (89-236)||(7213508-7213654)
chr2 (80-243)||(43427005-43427167)
chr2 (114-237)||(24356143-24356265)
chr2 (96-158)||(5425969-5426031)
chr2 (106-236)||(10069530-10069659)
chr2 (113-224)||(38280148-38280258)
chr2 (116-237)||(18181168-18181288)
chr2 (148-235)||(31348545-31348632)
chr2 (75-237)||(39166606-39166771)
chr2 (108-175)||(45464162-45464228)
chr2 (140-242)||(1908472-1908574)
chr2 (114-236)||(18460521-18460642)
chr2 (114-236)||(36748181-36748302)
chr2 (115-242)||(3199925-3200049)
chr2 (107-184)||(14384057-14384133)
chr2 (116-236)||(31592583-31592703)
chr2 (96-236)||(9472455-9472594)
chr2 (108-171)||(32556270-32556330)
chr2 (113-243)||(2756700-2756829)
chr2 (89-171)||(6213778-6213859)
chr2 (113-213)||(14890373-14890470)
chr2 (108-168)||(883100-883159)
chr2 (112-171)||(8550593-8550651)
chr2 (105-224)||(12949908-12950026)
chr2 (108-171)||(28527062-28527124)
chr2 (112-171)||(40965112-40965170)
chr2 (108-171)||(44736964-44737026)
chr2 (113-227)||(3123688-3123801)
chr2 (115-161)||(5007194-5007240)
chr2 (113-199)||(43077678-43077763)
chr2 (101-151)||(44024825-44024875)
chr2 (138-236)||(44424241-44424337)
chr2 (111-171)||(435026-435087)
chr2 (78-174)||(10394202-10394295)
chr2 (95-136)||(14306031-14306072)
chr2 (106-171)||(39159717-39159780)
chr2 (106-171)||(39209414-39209477)
chr2 (126-214)||(39807268-39807355)
[»] chr6 (22 HSPs)
chr6 (89-242)||(15371791-15371943)
chr6 (78-236)||(15325180-15325337)
chr6 (89-236)||(15321153-15321299)
chr6 (91-236)||(15355608-15355752)
chr6 (78-236)||(34803621-34803781)
chr6 (78-237)||(33921386-33921544)
chr6 (89-236)||(15351311-15351457)
chr6 (132-234)||(3166078-3166180)
chr6 (91-243)||(31075854-31076005)
chr6 (132-235)||(3874020-3874123)
chr6 (111-242)||(4552936-4553059)
chr6 (78-162)||(16126318-16126402)
chr6 (113-241)||(3604552-3604679)
chr6 (111-171)||(15081521-15081580)
chr6 (111-175)||(33109467-33109530)
chr6 (127-214)||(20027637-20027724)
chr6 (108-174)||(7739465-7739530)
chr6 (83-169)||(20383944-20384030)
chr6 (115-241)||(31265807-31265932)
chr6 (176-242)||(33017958-33018024)
chr6 (95-227)||(9354374-9354505)
chr6 (78-227)||(34703643-34703792)
[»] chr7 (45 HSPs)
chr7 (78-242)||(32776010-32776174)
chr7 (78-237)||(29996945-29997104)
chr7 (82-232)||(47238254-47238404)
chr7 (78-242)||(37264340-37264502)
chr7 (112-236)||(32971968-32972092)
chr7 (112-232)||(23111039-23111159)
chr7 (128-236)||(10355701-10355809)
chr7 (146-242)||(38589761-38589857)
chr7 (92-227)||(8150001-8150135)
chr7 (114-237)||(45218111-45218233)
chr7 (114-236)||(2849288-2849409)
chr7 (83-169)||(33773965-33774051)
chr7 (107-236)||(43007927-43008057)
chr7 (114-242)||(30659433-30659560)
chr7 (113-236)||(9602894-9603017)
chr7 (113-236)||(9830465-9830588)
chr7 (78-236)||(34064248-34064405)
chr7 (107-220)||(6697130-6697242)
chr7 (111-227)||(21446478-21446594)
chr7 (89-168)||(39143601-39143680)
chr7 (71-193)||(27621913-27622035)
chr7 (126-236)||(36070138-36070247)
chr7 (113-169)||(9658937-9658993)
chr7 (96-171)||(11616660-11616733)
chr7 (158-242)||(18731466-18731550)
chr7 (108-192)||(45890805-45890888)
chr7 (133-235)||(39343644-39343744)
chr7 (113-178)||(5724660-5724724)
chr7 (113-241)||(7425829-7425957)
chr7 (106-190)||(36194599-36194684)
chr7 (116-236)||(3667832-3667951)
chr7 (107-236)||(14648862-14648993)
chr7 (153-236)||(24288456-24288539)
chr7 (108-243)||(29257573-29257707)
chr7 (113-236)||(37490570-37490692)
chr7 (106-174)||(39498768-39498838)
chr7 (96-171)||(44604413-44604487)
chr7 (120-158)||(37496354-37496392)
chr7 (114-171)||(23058916-23058972)
chr7 (95-136)||(31549556-31549597)
chr7 (138-243)||(33584589-33584694)
chr7 (111-168)||(49100453-49100509)
chr7 (111-171)||(30463114-30463173)
chr7 (107-151)||(32346635-32346679)
chr7 (83-235)||(40023649-40023800)
[»] chr5 (43 HSPs)
chr5 (78-235)||(5147413-5147570)
chr5 (78-236)||(38978937-38979095)
chr5 (95-242)||(13016298-13016444)
chr5 (78-236)||(15564810-15564963)
chr5 (95-236)||(13087676-13087816)
chr5 (76-242)||(5357733-5357898)
chr5 (112-234)||(42818938-42819060)
chr5 (90-226)||(4194975-4195112)
chr5 (91-236)||(31090337-31090482)
chr5 (78-241)||(16926006-16926171)
chr5 (78-242)||(39060340-39060503)
chr5 (89-242)||(25111078-25111229)
chr5 (89-242)||(25170169-25170320)
chr5 (76-236)||(31196352-31196512)
chr5 (112-243)||(11099429-11099559)
chr5 (89-242)||(25108600-25108751)
chr5 (89-242)||(25167692-25167843)
chr5 (78-235)||(39060868-39061028)
chr5 (139-236)||(15898224-15898321)
chr5 (177-238)||(7871344-7871405)
chr5 (94-242)||(35988661-35988808)
chr5 (113-241)||(42575591-42575718)
chr5 (115-237)||(4044433-4044553)
chr5 (106-236)||(6172926-6173055)
chr5 (106-235)||(7311128-7311254)
chr5 (114-242)||(36006849-36006973)
chr5 (83-156)||(6629318-6629391)
chr5 (78-232)||(35666922-35667073)
chr5 (78-136)||(22983076-22983134)
chr5 (78-151)||(792095-792168)
chr5 (108-192)||(41594795-41594878)
chr5 (108-171)||(858433-858495)
chr5 (112-171)||(3725284-3725342)
chr5 (78-141)||(15898605-15898668)
chr5 (112-163)||(25344692-25344742)
chr5 (124-163)||(35012812-35012851)
chr5 (132-227)||(35968762-35968857)
chr5 (108-171)||(42211427-42211489)
chr5 (106-156)||(39212500-39212550)
chr5 (107-239)||(4475276-4475405)
chr5 (108-237)||(33988232-33988360)
chr5 (140-220)||(39035834-39035914)
chr5 (111-171)||(41184758-41184817)
[»] scaffold0576 (1 HSPs)
scaffold0576 (91-236)||(598-742)
[»] scaffold0221 (1 HSPs)
scaffold0221 (89-235)||(10717-10864)
[»] scaffold0155 (1 HSPs)
scaffold0155 (78-202)||(7838-7960)
[»] scaffold0262 (1 HSPs)
scaffold0262 (111-235)||(12385-12509)
[»] scaffold0034 (1 HSPs)
scaffold0034 (96-171)||(98923-98997)
[»] scaffold0003 (1 HSPs)
scaffold0003 (113-237)||(352415-352536)
[»] scaffold0578 (1 HSPs)
scaffold0578 (115-161)||(4438-4484)
[»] scaffold0321 (1 HSPs)
scaffold0321 (111-228)||(9503-9618)
[»] scaffold0086 (1 HSPs)
scaffold0086 (115-236)||(5851-5969)
[»] scaffold0007 (1 HSPs)
scaffold0007 (148-214)||(158068-158134)
[»] scaffold0058 (1 HSPs)
scaffold0058 (115-171)||(14554-14609)
[»] scaffold0009 (1 HSPs)
scaffold0009 (78-158)||(220132-220212)


Alignment Details
Target: chr3 (Bit Score: 211; Significance: 1e-115; HSPs: 43)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 211; E-Value: 1e-115
Query Start/End: Original strand, 390 - 660
Target Start/End: Original strand, 24619325 - 24619595
Alignment:
Q  390 tagttcattattttagtttcacatgaagaaactttagccattgactgattgctgtagatgtaaccagttcttagttcaaattcatacttttatttatttt 489  Q
    |||||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||    
T  24619325 tagttcattattttagtttcacatgaagaaactttagccattgattgattgctctagatgtaaccagttcttagttcaaattcatacttttatttatctt 24619424  T
Q  490 gactttttggttgattttagtgtaatattcaatttagataatattgggataatttatttcacttttgcccttccatcgtttaagagaatccgagttgaaa 589  Q
    |||||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| || |||    
T  24619425 gactttttggttgattttagtggagtattcaatttagataatattgggatcatttatttcacttttgcccttccatcgtttaagagaatccgaattaaaa 24619524  T
Q  590 cctagtcgaaaaaatcattggtcagaaccaacttcccgacctaactgttgattattatcatggttcatctc 660  Q
    |||||||||||||||||||||||| ||||||| ||||  || || ||||||||||||||||||| ||||||    
T  24619525 cctagtcgaaaaaatcattggtcaaaaccaacctcccagccaaattgttgattattatcatggtccatctc 24619595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 22 - 217
Target Start/End: Original strand, 24618788 - 24618983
Alignment:
Q  22 atttagggtgtcctctcaaatattcaagtcctaaaacgtttaattgcccaaaaaagtacttcctccctcccattttaactgaaccttttgctcatttcac 121  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||    
T  24618788 atttagggtgtcctctcaaatattcaagtcctataacgtttaattgcccaaaaaagtactttctccctcccattttaactgaaccttttgctcgtttcac 24618887  T
Q  122 acttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaa 217  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||    
T  24618888 acttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaagtgcctttatcaactagtggtgtattcttctttagcataaatacaa 24618983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 104; E-Value: 2e-51
Query Start/End: Original strand, 280 - 391
Target Start/End: Original strand, 24619092 - 24619203
Alignment:
Q  280 gcaaatgactcggttagtatgagacggagggagtacaattttttcagctagtcattttgcagccattcaaagttgcattagaaaaaggaaccaaattgtt 379  Q
    ||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |    
T  24619092 gcaaatgactcagttagtatgagacggagggagtacaattttttcagctagtcattttgcagccattcaaagttgcattagaaaaaggaaccaaattgct 24619191  T
Q  380 ctgttcctaata 391  Q
    ||||||||||||    
T  24619192 ctgttcctaata 24619203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 75 - 242
Target Start/End: Complemental strand, 1923278 - 1923117
Alignment:
Q  75 aagtacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatg 174  Q
    ||||||| ||||| ||||||||||||||| || || ||||||||||||||||||||||||||||||||||||||||   |||||||||||||||    ||    
T  1923278 aagtactccctccgtcccattttaactgagccctt-gctcatttcacacttattaagaaaaagtgtataagtgaaa--aagagaaaaatggttt---gtg 1923185  T
Q  175 cctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    || ||||||||| |||||| ||| ||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  1923184 cccttatcaactgttggtgcattcttctttatcataaatgcaaagtagaatatattgaattgggagtg 1923117  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 46194123 - 46194280
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||| ||||||||| || ||  || |||||||||||||||||||||||||||||||| |||| ||||||||||||| ||| | ||||     
T  46194123 tactccctccgtcccaatttaactgagcccttgactaatttcacacttattaagaaaaagtgtataagttaaagagagagaaaaatgggtttgagtgccc 46194222  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    ||||||||| |||||| | || |||||| ||||||| ||||||||||||| ||||||||    
T  46194223 ttatcaactgttggtgca-ttctctttatcataaatgcaaagtagaatatattgaattg 46194280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 112 - 242
Target Start/End: Original strand, 1334732 - 1334861
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    ||||||||||||  |||||||||| | |||||| |||||| |||||||||||  |||| |||||||||||||| |||||||| ||| ||||||| |||||    
T  1334732 ctcatttcacacagattaagaaaa-gcgtataaatgaaagagagagaaaaataattttgaatgcctttatcaagtattggtgcattcttctttatcataa 1334830  T
Q  212 atacaaagtagaatatgttgaattggaagtg 242  Q
    ||  |||||||||||| ||||||||| ||||    
T  1334831 atgtaaagtagaatatattgaattgggagtg 1334861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 78 - 243
Target Start/End: Original strand, 38600723 - 38600887
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||| ||||| || ||| ||| |||||||| |||  |||||||||| |||||||| |||||  |||||||||||| |||| | | |||    
T  38600723 tactccctccatcccagtttaattggaccattttctcatttcgcacagattaagaaaa-gtgtataaatgaaaaagagagaaaaatgattttgagtccct 38600821  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtga 243  Q
    ||||||| |||||||| ||| ||||||| |||||||  |||||| ||||| ||||| ||| |||||    
T  38600822 ttatcaagtattggtgcattcttctttaccataaatgtaaagtataatatattgaactgggagtga 38600887  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 106 - 241
Target Start/End: Original strand, 44218979 - 44219112
Alignment:
Q  106 cttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttcttta 205  Q
    |||||| ||||||||||| |||||||||||||||||||||| ||||  |||||||||||||||| | || |||    || | |||||| |||   | |||    
T  44218979 cttttgttcatttcacacatattaagaaaaagtgtataagtcaaagaaagagaaaaatggttttgagtgtctt--gtaagtgttggtgcattccccatta 44219076  T
Q  206 gcataaatacaaagtagaatatgttgaattggaagt 241  Q
     ||||||||||||||||||||| |||||||||||||    
T  44219077 tcataaatacaaagtagaatatattgaattggaagt 44219112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 90 - 213
Target Start/End: Original strand, 36790750 - 36790872
Alignment:
Q  90 cccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactatt 189  Q
    |||||||||||||| ||||   ||||||| ||| ||||||| ||||| |||||||||||||| ||||||||||||  ||| |  ||  ||||||||||||    
T  36790750 cccattttaactgagccttga-ctcattttacatttattaaaaaaaattgtataagtgaaagagagagaaaaatgagtttgagcgcacttatcaactatt 36790848  T
Q  190 ggtgtatttttctttagcataaat 213  Q
    |||||||| ||||||| |||||||    
T  36790849 ggtgtattcttctttatcataaat 36790872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 116 - 242
Target Start/End: Complemental strand, 48409738 - 48409611
Alignment:
Q  116 tttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaa--tggttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    |||||||| |||||||||||| ||||||| |||||| |||||| |||  | ||||| | || |||| |||| |||||||| ||| ||||||| |||||||    
T  48409738 tttcacacatattaagaaaaa-tgtataaatgaaagagagagagaaagattgttttgagtgtctttgtcaagtattggtggattcttctttatcataaat 48409640  T
Q  214 acaaagtagaatatgttgaattggaagtg 242  Q
      |||||||||||||||||||||| ||||    
T  48409639 gtaaagtagaatatgttgaattgggagtg 48409611  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 78 - 235
Target Start/End: Complemental strand, 51165142 - 51164986
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||| | ||||| ||| || ||| || |||||||||  |||||||||| |||||||| | |||| |||||||||||  |||| | || ||    
T  51165142 tactccctccgtccgagtttaattgagccattttctgatttcacacaaattaagaaaa-gtgtataaataaaagagagagaaaaataattttgagtgtct 51165044  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaatt 235  Q
    ||||||| |||||||| ||| ||||||| |||||||  |||||||||||| |||||||    
T  51165043 ttatcaagtattggtgcattcttctttatcataaatgtaaagtagaatatattgaatt 51164986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 30261420 - 30261509
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttt 169  Q
    |||| ||||| ||||||||||||||| ||||||| ||||||||| | |||||||||| ||||  |||||||||| ||||||||||| |||||    
T  30261420 tactccctccgtcccattttaactgagccttttgttcatttcacgcatattaagaaagagtg--taagtgaaagagagagaaaaatagtttt 30261509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #13
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 129 - 236
Target Start/End: Complemental strand, 41287402 - 41287295
Alignment:
Q  129 aagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatg 228  Q
    |||||||  |||||||||||||| ||||||||||||||||| | |  |||| |||| ||||| || ||| ||||||| |||||||  ||||||||||||     
T  41287402 aagaaaacatgtataagtgaaagagagagaaaaatggttttgactatctttgtcaagtattgatgcattattctttatcataaatgtaaagtagaatata 41287303  T
Q  229 ttgaattg 236  Q
    ||||||||    
T  41287302 ttgaattg 41287295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #14
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 78 - 205
Target Start/End: Original strand, 26479785 - 26479918
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataa------gtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||||  | |||||||||||| || || | |||||||||||||||||||||||||| |||||      |||  || |||||| | |||||||| |    
T  26479785 tacttcctccgcctcattttaactgagcccttggttcatttcacacttattaagaaaaagtatataagtgtgtgtgtgagagagagagagatggttttga 26479884  T
Q  172 atgcctttatcaactattggtgtatttttcttta 205  Q
    |||| ||||||||||||||||| ||| |||||||    
T  26479885 atgcatttatcaactattggtgcattcttcttta 26479918  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #15
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 169
Target Start/End: Complemental strand, 9218297 - 9218244
Alignment:
Q  116 tttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttt 169  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||| |||||    
T  9218297 tttcacacatattaagaaaaagtgtataagtgaaagagagagaaaaatagtttt 9218244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #16
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 21296458 - 21296582
Alignment:
Q  116 tttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatac 215  Q
    |||||||| || ||||| ||| ||||||| |||| | ||||| |||||| ||||||||||  || | || |||||||| |||||||  || ||||||| |    
T  21296458 tttcacacatactaagacaaa-tgtataaatgaaggagagaggaaaatgattttaaatgctcttgttaagtattggtgcatttttcactatcataaatgc 21296556  T
Q  216 aaagtagaatatgttgaattggaagt 241  Q
    |||||||||||| |||||||||||||    
T  21296557 aaagtagaatatattgaattggaagt 21296582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #17
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 243
Target Start/End: Complemental strand, 9017958 - 9017827
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcata 210  Q
    ||||||||||||| |||||| ||||| ||||||| |||||| ||||||||||| ||||||| ||| ||| | || |||||||| ||| | |  ||  |||    
T  9017958 gctcatttcacacatattaaaaaaaa-tgtataaatgaaagagagagaaaaatagttttaagtgcttttgttaagtattggtgcattctccactattata 9017860  T
Q  211 aatacaaagtagaatatgttgaattggaagtga 243  Q
    ||| ||||||  ||||| |||||||||||||||    
T  9017859 aatgcaaagtgaaatatattgaattggaagtga 9017827  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #18
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 17776911 - 17777002
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttta 170  Q
    |||||||||| |||||  ||||||||  | |||||||||||||||| |||||| ||||| ||||||| |||| | ||||||||||||||||||    
T  17776911 tacttcctccgtcccagattaactgagtcatttgctcatttcacacgtattaa-aaaaaatgtataaatgaatgagagagaaaaatggtttta 17777002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 78 - 170
Target Start/End: Original strand, 19078212 - 19078303
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttta 170  Q
    |||||||||| |||||  ||||||||  | |||||||||||||||| |||||| ||||| ||||||| |||| | ||||||||||||||||||    
T  19078212 tacttcctccgtcccagattaactgagtcatttgctcatttcacacgtattaa-aaaaaatgtataaatgaatgagagagaaaaatggtttta 19078303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #20
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 39329705 - 39329824
Alignment:
Q  116 tttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatac 215  Q
    |||||||| |||||||||||| |||||||||||||| || ||| |||| ||||| |||| | || | || |||||||| ||| ||  ||| ||||||| |    
T  39329705 tttcacacatattaagaaaaaatgtataagtgaaagagaaagataaatagttttgaatgtc-ttgttaagtattggtgcattctttcttatcataaatgc 39329803  T
Q  216 aaagtagaatatgttgaattg 236  Q
    |||||||||||| ||||||||    
T  39329804 aaagtagaatatattgaattg 39329824  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 2868734 - 2868672
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||||||||||||||| |||||||||||| ||||||| |||| | |||||||||||||||||||    
T  2868734 tttgctcatttcacacatattaagaaaaa-tgtataaatgaaggagagagaaaaatggttttaa 2868672  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 54021429 - 54021531
Alignment:
Q  133 aaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttga 232  Q
    |||||||||||| | |||| |||||||||||| |||| | || ||||||||| ||||| || ||| |||||||  ||||||  |||||||||||| ||||    
T  54021429 aaaagtgtataaataaaagagagagaaaaatgattttgagtgtctttatcaaatattgttgcattcttctttattataaatgtaaagtagaatatattga 54021528  T
Q  233 att 235  Q
    |||    
T  54021529 att 54021531  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 241
Target Start/End: Original strand, 54122176 - 54122303
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    ||||||||||| |||||||| ||| ||||||| |||| | ||||||||||| ||||||||||  ||| | || |||||||| ||| | |  || ||||||    
T  54122176 tcatttcacacatattaagacaaa-tgtataaatgaaggagagagaaaaatagttttaaatgtttttgttaagtattggtgcattctccactatcataaa 54122274  T
Q  213 tacaaagtagaatatgttgaattggaagt 241  Q
    | ||||||  ||||| |||||||||||||    
T  54122275 tgcaaagtgaaatatattgaattggaagt 54122303  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #24
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 84 - 158
Target Start/End: Complemental strand, 39144845 - 39144770
Alignment:
Q  84 ctccctcccattttaactgaaccttttgctcatttcacacttattaaga-aaaagtgtataagtgaaagggagaga 158  Q
    |||| ||||||| ||| ||| ||||||| ||||||||||| |||||||| |||| |||||||||||||| ||||||    
T  39144845 ctccatcccattataagtgagccttttgttcatttcacacatattaagaaaaaaatgtataagtgaaagagagaga 39144770  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #25
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 53051180 - 53051058
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    ||||||||||  |||||||||| ||||||||   |||| ||||||||||| ||||| | ||||||| |||| |||| ||| ||| || |||| |||||||    
T  53051180 catttcacacagattaagaaaa-gtgtataaagtaaagagagagaaaaatagttttgagtgcctttttcaagtatttgtgcattcttgtttatcataaat 53051082  T
Q  214 acaaagtagaatatgttgaattgg 237  Q
      |||||| ||||| |||||||||    
T  53051081 gtaaagtataatatattgaattgg 53051058  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #26
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 53754034 - 53754137
Alignment:
Q  132 aaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttg 231  Q
    ||||||||||||| |||||  |||||||||||| |||| | || ||||   || |||||||| ||| ||||||| |||||||  |||||||||||| |||    
T  53754034 aaaaagtgtataaatgaaatagagagaaaaatgattttgagtgtctttggtaagtattggtgcattcttctttatcataaatgtaaagtagaatatattg 53754133  T
Q  232 aatt 235  Q
    ||||    
T  53754134 aatt 53754137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #27
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 5245602 - 5245445
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| |||||  |||||||| || ||||||||  ||| || |||||||| ||| ||||||  |||| | ||||||||||| ||||||| |||      
T  5245602 tactccctccgtcccagattaactgagccatttgctcaaatcatacatattaagacaaa-tgtatacatgaaggagagagaaaaatagttttaagtgctc 5245504  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    || | || |||||||||||| | |  || |||||||||||||| |||||| ||||||||    
T  5245503 ttgttaagtattggtgtattctccaatatcataaatacaaagtggaatatattgaattg 5245445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #28
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 156
Target Start/End: Original strand, 36315651 - 36315729
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggaga 156  Q
    |||| ||||| ||| ||| ||||| | | ||||||||||| ||||| |||||||||||||||||||||| |||| ||||    
T  36315651 tactccctccgtcctattataactaagctttttgctcattccacacatattaagaaaaagtgtataagtaaaagagaga 36315729  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 132 - 222
Target Start/End: Original strand, 38524263 - 38524352
Alignment:
Q  132 aaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtag 222  Q
    ||||| ||||||||||||||  | |||||||| ||||| ||||  |||||||| ||||| |||||||||| | | ||||||||||||||||    
T  38524263 aaaaaatgtataagtgaaagaaaaagaaaaatagttttgaatgt-tttatcaagtattgatgtatttttcatcatcataaatacaaagtag 38524352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 95 - 236
Target Start/End: Original strand, 32977724 - 32977864
Alignment:
Q  95 tttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgt 194  Q
    ||||||||| || |||  |||||||||||  |||||||||| ||||||||   |||| | ||||||||| ||||| | ||| ||| |||| ||||| ||     
T  32977724 tttaactgagccattttttcatttcacacggattaagaaaa-gtgtataaagtaaagagggagaaaaatagttttgagtgcatttttcaagtattgatgc 32977822  T
Q  195 atttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    ||||||||||| |||||||  ||  |||||||| ||||||||    
T  32977823 atttttctttatcataaatgtaatttagaatatattgaattg 32977864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #31
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 135
Target Start/End: Original strand, 38215761 - 38215818
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaa 135  Q
    |||||||||| || || ||||| |||| |||||||||||||||||||||| |||||||    
T  38215761 tacttcctccgtctcaatttaaatgaatcttttgctcatttcacacttataaagaaaa 38215818  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #32
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 21585327 - 21585490
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||||||||| ||||| ||| |  ||| |||||| |||| ||||| ||||||| | ||| |||||| |  ||||||||||| |||| | || ||    
T  21585327 tactccctccctcccaatttaattgagcaatttactcattccacatttattgagaaaaa-tatattagtgaaggacagagaaaaatgattttgagtgtct 21585425  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    || | || |||||||  ||| ||||||| |||||||  ||| |||||||| ||| ||||||||||    
T  21585426 ttgttaattattggttcattcttctttatcataaatgtaaaatagaatatattgtattggaagtg 21585490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 116 - 243
Target Start/End: Original strand, 42547061 - 42547187
Alignment:
Q  116 tttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatac 215  Q
    |||||||| |||||||||||| | ||||||| |||| |||| |||||| ||||| |||| | || | || |||||||| ||| ||  ||| ||||||| |    
T  42547061 tttcacacatattaagaaaaaatttataagtaaaagagagaaaaaaatagttttgaatgtc-ttgttaagtattggtgcattctttcttatcataaatgc 42547159  T
Q  216 aaagtagaatatgttgaattggaagtga 243  Q
    |||  ||||||| ||||||||| |||||    
T  42547160 aaaagagaatatattgaattgggagtga 42547187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Original strand, 51636843 - 51636905
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||| |||||||| | ||||||||||||| ||| |||||||| | |||||||||||||||||||    
T  51636843 tttgttcatttcataattattaagaaaaa-tgtttaagtgaaggagagagaaaaatggttttaa 51636905  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #35
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 95 - 133
Target Start/End: Complemental strand, 26832235 - 26832197
Alignment:
Q  95 tttaactgaaccttttgctcatttcacacttattaagaa 133  Q
    ||||||||| ||||||||||| |||||||||||||||||    
T  26832235 tttaactgagccttttgctcaattcacacttattaagaa 26832197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #36
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 84 - 146
Target Start/End: Original strand, 34081017 - 34081079
Alignment:
Q  84 ctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagt 146  Q
    |||| ||||||||||||  || |||||| | |||| |||| ||||||||||||||||||||||    
T  34081017 ctccatcccattttaacccaaacttttgtttattttacacatattaagaaaaagtgtataagt 34081079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #37
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 112 - 197
Target Start/End: Original strand, 39866504 - 39866588
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatt 197  Q
    |||||||||||| |||||||||||| ||||||| |||| |  |||||||||| ||||||| ||  ||| | || ||||||||||||    
T  39866504 ctcatttcacacatattaagaaaaa-tgtataaatgaaggaaagagaaaaatagttttaagtgattttgttaagtattggtgtatt 39866588  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #38
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 241
Target Start/End: Original strand, 43639471 - 43639595
Alignment:
Q  116 tttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatac 215  Q
    |||||||| |||||||| ||| | ||||| |||| | ||||||||||||||||||| |||  || | || ||||| || ||||| |  || ||||||| |    
T  43639471 tttcacacatattaagacaaa-tatataaatgaaggagagagaaaaatggttttaagtgctgttgttaagtattgatgcattttccactatcataaatgc 43639569  T
Q  216 aaagtagaatatgttgaattggaagt 241  Q
    |||||  ||||| |||||||||||||    
T  43639570 aaagtgaaatatattgaattggaagt 43639595  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 47684903 - 47684858
Alignment:
Q  106 cttttgctcatttcacacttattaagaaaaagtgtataagtgaaag 151  Q
    |||||| ||||||||||| ||||||||||| ||||| |||||||||    
T  47684903 cttttgttcatttcacacatattaagaaaaggtgtacaagtgaaag 47684858  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #40
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 11529023 - 11529092
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagag---aaaaatggttttaaatgc 175  Q
    |||||||||||||||| |||||||||||| | ||||| ||||||  ||||   ||||||||||||||||||    
T  11529023 tttgctcatttcacacatattaagaaaaa-tatataaatgaaagaaagagaaaaaaaatggttttaaatgc 11529092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #41
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 96 - 136
Target Start/End: Complemental strand, 12745134 - 12745094
Alignment:
Q  96 ttaactgaaccttttgctcatttcacacttattaagaaaaa 136  Q
    ||||||||  |||||||||||||||||| ||||||||||||    
T  12745134 ttaactgagtcttttgctcatttcacacatattaagaaaaa 12745094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 155 - 243
Target Start/End: Complemental strand, 31651024 - 31650937
Alignment:
Q  155 gagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtga 243  Q
    |||||||||| |||||| || |||  |||| |||| ||| ||||||| ||| |||||||||||| |||||||| || ||||| ||||||    
T  31651024 gagaaaaatgattttaagtgtcttg-tcaagtatttgtgcatttttcattatcataaatacaaattagaatatattaaattgaaagtga 31650937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 186 - 242
Target Start/End: Complemental strand, 45819732 - 45819676
Alignment:
Q  186 tattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    ||||||| ||||| || ||| |||||||| |||||| |||||||||||||| |||||    
T  45819732 tattggtttatttatcattatcataaataaaaagtaaaatatgttgaattgaaagtg 45819676  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 99; Significance: 2e-48; HSPs: 74)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 99; E-Value: 2e-48
Query Start/End: Original strand, 76 - 242
Target Start/End: Original strand, 29756057 - 29756223
Alignment:
Q  76 agtacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgc 175  Q
    |||||| ||||| |||||||||||| || || || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | |||    
T  29756057 agtactccctccgtcccattttaacggagcccttggctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgc 29756156  T
Q  176 ctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    | |||||||||||||||| ||| ||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  29756157 ccttatcaactattggtgcattcttctttatcataaatgcaaagtagaatatattgaattgggagtg 29756223  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 98; E-Value: 6e-48
Query Start/End: Original strand, 78 - 243
Target Start/End: Complemental strand, 26583919 - 26583754
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| |||||||||||||||||| ||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||  ||| | |||||    
T  26583919 tactccctccgtcccattttaactgaacccttgactcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgagtttgagtgcct 26583820  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtga 243  Q
    |||||||||||||||| ||| ||||||| ||||||| |||| |||||||| ||||||||| |||||    
T  26583819 ttatcaactattggtgcattcttctttatcataaatgcaaaatagaatatattgaattgggagtga 26583754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 90; E-Value: 4e-43
Query Start/End: Original strand, 113 - 242
Target Start/End: Original strand, 37541065 - 37541194
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||| |||||||||||||||||| ||| |||||||  |||||    
T  37541065 tcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttgaatgtctttatcaactattggtgcattcttctttattataaa 37541164  T
Q  213 tacaaagtagaatatgttgaattggaagtg 242  Q
    |  |||||||||||| ||||||||||||||    
T  37541165 tgtaaagtagaatatattgaattggaagtg 37541194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 83; E-Value: 6e-39
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 24131318 - 24131481
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttg-ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcc 176  Q
    |||| ||||| |||||||||||||||  | |||| |||||||||||||||||||||||||| |||||||||||||  |||||||||||||||| ||||||    
T  24131318 tactccctccgtcccattttaactgagtcatttgactcatttcacacttattaagaaaaagcgtataagtgaaag--agagaaaaatggttttgaatgcc 24131415  T
Q  177 tttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
     ||||||||||| |||| ||| ||||||| ||||||| ||||||| ||||| ||||||||| ||||    
T  24131416 cttatcaactataggtgcattcttctttatcataaatgcaaagtataatatattgaattgggagtg 24131481  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 26924037 - 26924195
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| |||| |||||||||| |  || ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||  ||| | ||||     
T  26924037 tactccctccgtcccgttttaactgagctcttggctcatttcacacttattaagaaaaagtgtaaaagtgaaagagagagaaaaatgagtttgagtgccc 26924136  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    |||||||||||||||| ||| ||||||| ||||||| ||||||| ||||| ||||||||    
T  26924137 ttatcaactattggtgcattcttctttatcataaatgcaaagtataatatattgaattg 26924195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 311 - 391
Target Start/End: Complemental strand, 29051385 - 29051305
Alignment:
Q  311 agtacaattttttcagctagtcattttgcagccattcaaagttgcattagaaaaaggaaccaaattgttctgttcctaata 391  Q
    |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  29051385 agtagaattttttcagctagtcattttgcagccattcaaagttgcattagaaaaaggaaccaaattgttctgttcctaata 29051305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 76; E-Value: 8e-35
Query Start/End: Original strand, 78 - 221
Target Start/End: Original strand, 3160604 - 3160747
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||||||||||||| || ||  |||||||||||||||||||||||||||||||||||||||| || |||||||||| ||| | ||||     
T  3160604 tactccctccgtcccattttaactgagcccttgactcatttcacacttattaagaaaaagtgtataagtgaaagagaaagaaaaatgggtttgagtgccc 3160703  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagta 221  Q
    || ||||||||||||| ||| ||||||| ||||||| |||||||    
T  3160704 ttgtcaactattggtgcattattctttatcataaatgcaaagta 3160747  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 73; E-Value: 5e-33
Query Start/End: Original strand, 396 - 496
Target Start/End: Complemental strand, 29051174 - 29051074
Alignment:
Q  396 attattttagtttcacatgaagaaactttagccattgactgattgctgtagatgtaaccagttcttagttcaaattcatacttttatttattttgacttt 495  Q
    ||||||||||||||| ||||| ||||||||||||||||||||||||| |||| ||||||| |||||||||||||||||||||||||||||| ||| ||||    
T  29051174 attattttagtttcatatgaaaaaactttagccattgactgattgctatagaagtaaccacttcttagttcaaattcatacttttatttatcttggcttt 29051075  T
Q  496 t 496  Q
    |    
T  29051074 t 29051074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 83 - 236
Target Start/End: Original strand, 46363332 - 46363486
Alignment:
Q  83 cctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgc-ctttat 181  Q
    ||||| ||| ||||||| ||| |||||  ||||||||||||||||||||||||||||||||||||| || |||||| |||||  ||| | ||| ||||||    
T  46363332 cctccgtccaattttaattgagcctttcactcatttcacacttattaagaaaaagtgtataagtgagagagagagagaaatgtgtttgagtgcactttat 46363431  T
Q  182 caactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    |||||||||||| ||| ||||||| ||||||| ||||||| ||||| ||||||||    
T  46363432 caactattggtgcattcttctttatcataaatgcaaagtaaaatatattgaattg 46363486  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 67; E-Value: 2e-29
Query Start/End: Original strand, 77 - 227
Target Start/End: Complemental strand, 50926939 - 50926789
Alignment:
Q  77 gtacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcc 176  Q
    ||||| ||||| || |||||||||||| | |||| |||||||||||  |||||||||||| ||||||||  |||| ||||||||||||||||| |||||     
T  50926939 gtactccctccgtctcattttaactgagcttttttctcatttcacatatattaagaaaaattgtataagaaaaagagagagaaaaatggttttgaatgca 50926840  T
Q  177 tttatcaactattggtgtatttttctttagcataaatacaaagtagaatat 227  Q
    ||| |||| |||||||| ||| ||||||| |||||||  ||||||||||||    
T  50926839 tttgtcaagtattggtgcattcttctttatcataaatgtaaagtagaatat 50926789  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 5503575 - 5503453
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    ||||||||||||||||||||||||||||||||| ||||  |||||||||||||||||||  | || |||||||||||||||| ||| ||||||| ||| |    
T  5503575 ctcatttcacacttattaagaaaaagtgtataaatgaa--ggagagaaaaatggttttaggtacccttatcaactattggtgcattcttctttatcatta 5503478  T
Q  212 atacaaagtagaatatgttgaattg 236  Q
    || ||||||| ||||| ||||||||    
T  5503477 attcaaagtataatatattgaattg 5503453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 29225322 - 29225489
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgta---taagtgaaagggagagaaaaatggttttaaatg 174  Q
    |||| ||||| ||||||| ||| |||  |||||||||||||||||| |||||||||||||||||   |||||||||| | |||||||||| |||| | ||    
T  29225322 tactccctccgtcccattataattgagtcttttgctcatttcacacatattaagaaaaagtgtagtataagtgaaagagtgagaaaaatgattttgagtg 29225421  T
Q  175 cctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    ||||| | || |||||||| ||| || |||| |||||||  |||||||||||| ||||||||||||||    
T  29225422 cctttgttaagtattggtgcattcttttttatcataaatggaaagtagaatatattgaattggaagtg 29225489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 37925192 - 37925321
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggaga----gaaaaatggttttaaatgcctttatcaactattggtgtatttttctttag 206  Q
    |||||||| |||||||||||||||||||||||||||||||| ||||    |||||||| |||| | |||  ||||||| |||||||| |||||||||||     
T  37925192 gctcatttaacacttattaagaaaaagtgtataagtgaaagagagagagagaaaaatgatttttagtgctcttatcaattattggtgcatttttctttat 37925291  T
Q  207 cataaatacaaagtagaatatgttgaattg 236  Q
    ||||||| ||||||||||||| ||||||||    
T  37925292 cataaatgcaaagtagaatatattgaattg 37925321  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 83 - 236
Target Start/End: Original strand, 40754336 - 40754488
Alignment:
Q  83 cctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatc 182  Q
    ||||| ||||| ||||||||| |  ||  ||||||||| |||||||||||||||||||||||||||||  |||||| |||||||||| | |||| |||||    
T  40754336 cctccgtcccaatttaactgagctcttgactcatttcatacttattaagaaaaagtgtataagtgaaa--gagagagaaatggttttgagtgcccttatc 40754433  T
Q  183 aa-ctattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    || ||||||||| ||| ||||||| ||||||| ||||||||||||| || |||||    
T  40754434 aacctattggtgcattcttctttatcataaatgcaaagtagaatatattaaattg 40754488  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 16956701 - 16956585
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcata 210  Q
    |||||||| |||| |||||||||||||||||||||||||||| |||||||||||| ||| | || |||||| || |||| ||| ||| || |||| ||||    
T  16956701 gctcatttgacacatattaagaaaaagtgtataagtgaaaggaagagaaaaatgggtttgagtgtctttattaagtatttgtgcattcttatttatcata 16956602  T
Q  211 aatacaaagtagaatat 227  Q
    |||| ||||||||||||    
T  16956601 aatataaagtagaatat 16956585  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 34814107 - 34813950
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||| ||||| ||||  |||||||||||||||||||||||||||||| ||||| |||||| | ||||||||||| ||||||| ||       
T  34814107 tactccctccgtcccaatttaagtgaattttttgctcatttcacacttattaagaaaaa-tgtattagtgaaggagagagaaaaatagttttaagtgttc 34814009  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    || | || |||| ||| |||| || ||| ||||||| ||||||||||||| ||||||||    
T  34814008 ttgttaagtattagtgcatttatcattatcataaatgcaaagtagaatatattgaattg 34813950  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 27932746 - 27932908
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttat----taagaaaaagtgtataagtgaaagggagagaaaaatggttttaaat 173  Q
    |||| ||||| ||||||||||||| |  | || |||||||||||| ||||    |||| |||||| |||||||||||| ||||||||||||  ||| | |    
T  27932746 tactccctccgtcccattttaactaagtcattggctcatttcacatttatatattaagtaaaagtatataagtgaaagagagagaaaaatgcgtttgagt 27932845  T
Q  174 gcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    | | || ||||||||||||| ||| ||||||| ||||||| ||||||||||||| ||||||||    
T  27932846 gtccttgtcaactattggtgcattcttctttatcataaatgcaaagtagaatatattgaattg 27932908  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 4466072 - 4466235
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||| ||||| ||| || |||| |||||||||||||||||||||||| | ||| |||||| | ||||||||||||| ||| | | |||    
T  4466072 tactccctccgtcccaatttaattgagccatttgttcatttcacacttattaagaaaaa-tatattagtgaatgagagagaaaaatgggtttgagtacct 4466170  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    || | || |||||||  ||| ||||||| |||||||  |||||||||||| ||| ||||||||||    
T  4466171 ttgttaagtattggtccattcttctttatcataaatgtaaagtagaatatattgtattggaagtg 4466235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 84 - 164
Target Start/End: Complemental strand, 26760461 - 26760381
Alignment:
Q  84 ctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatg 164  Q
    |||| |||||||||||| || |||||  ||||||||||||||||||||||||| |||||||||||||| ||||||||||||    
T  26760461 ctccgtcccattttaaccgagcctttgactcatttcacacttattaagaaaaaatgtataagtgaaagagagagaaaaatg 26760381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 16040237 - 16040104
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagc 207  Q
    ||||||||||||||| ||||||||||||| | ||| ||| || | ||||||||||||||||||| || |||| | || |||||||  ||| ||||||| |    
T  16040237 tttgctcatttcacatttattaagaaaaa-tatattagtcaaggagagagaaaaatggttttaagtgtctttgttaagtattggttcattcttctttatc 16040139  T
Q  208 ataaatacaaagtagaatatgttgaattggaagtg 242  Q
    ||||||  |||||||||||| ||| ||||||||||    
T  16040138 ataaatgtaaagtagaatatattgtattggaagtg 16040104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 31798546 - 31798451
Alignment:
Q  139 gtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    |||||||||||||  ||||||| |||||||| | |||| |||||||||||||||| ||| ||||||| ||||||| ||||||||||||| ||||||||    
T  31798546 gtataagtgaaag--agagaaatatggttttgagtgcccttatcaactattggtgcattattctttatcataaatgcaaagtagaatatattgaattg 31798451  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 3718779 - 3718924
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactat 188  Q
    ||||| ||||| ||||| |||||||||||||||||||||||||||||| ||||| | || ||| ||||||||||| ||||||| |||  || |||| |||    
T  3718779 tcccaatttaagtgaacattttgctcatttcacacttattaagaaaaa-tgtattaatg-aagagagagaaaaatagttttaagtgctcttgtcaagtat 3718876  T
Q  189 tggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    | ||| |||| || ||| |||||||  |||||| ||||| ||||||||    
T  3718877 ttgtgcatttatcattatcataaatgtaaagtataatatattgaattg 3718924  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 78 - 241
Target Start/End: Original strand, 11425787 - 11425949
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||| ||||| ||| || ||||||||||||||  ||||||||||||| | ||| |||||| | ||||||||||| ||||| | || ||    
T  11425787 tactccctccgtcccaatttaattgagccatttgctcatttcacgtttattaagaaaaa-tatattagtgaaggagagagaaaaatagttttgagtgtct 11425885  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagt 241  Q
    || | || |||||||  ||| ||||||| |||||||  |||||||||||| ||| |||||||||    
T  11425886 ttgttaagtattggtccattcttctttatcataaatgtaaagtagaatatattgtattggaagt 11425949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #24
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 83 - 212
Target Start/End: Complemental strand, 14090822 - 14090697
Alignment:
Q  83 cctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatc 182  Q
    ||||| |||||||||||||||||   | |||||||||||||||||||||| ||| |||||||||||||  ||||||||||| |  || | || |||||||    
T  14090822 cctccatcccattttaactgaactcctcgctcatttcacacttattaagacaaaatgtataagtgaaa--gagagaaaaatag--ttgattgtctttatc 14090727  T
Q  183 aactattggtgtatttttctttagcataaa 212  Q
    ||||||||||| ||| || |||| ||||||    
T  14090726 aactattggtgcattcttgtttatcataaa 14090697  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #25
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 133 - 239
Target Start/End: Original strand, 36232761 - 36232867
Alignment:
Q  133 aaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttga 232  Q
    ||||||||||||  ||||| |||||||||||| |||| | || ||||  ||| |||||||| ||| ||||||| |||||||| |||||||||||| ||||    
T  36232761 aaaagtgtataaacgaaagagagagaaaaatgattttgagtgtctttgacaagtattggtgcattcttctttatcataaatataaagtagaatatattga 36232860  T
Q  233 attggaa 239  Q
    |||||||    
T  36232861 attggaa 36232867  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #26
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 2886403 - 2886323
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagaga 158  Q
    |||||||| | ||||||||||| ||| || || |||||||||| ||||||||||||||||||||||||||| || ||||||    
T  2886403 tacttccttcgtcccattttaattgagcccttggctcatttcatacttattaagaaaaagtgtataagtgagagagagaga 2886323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #27
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 10587533 - 10587656
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    |||||||||||||||||||||||||||| |||||||||||  ||||||||||  |||||| || | ||||||| || || |  ||| ||| ||| |||||    
T  10587533 ctcatttcacacttattaagaaaaagtgcataagtgaaagaaagagaaaaataattttaagtgtcattatcaatta-tgatacattcttcattatcataa 10587631  T
Q  212 atacaaagtagaatatgttgaattg 236  Q
    || |||| |||||||| ||||||||    
T  10587632 atgcaaaatagaatatattgaattg 10587656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #28
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 92 - 235
Target Start/End: Original strand, 25983565 - 25983702
Alignment:
Q  92 cattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattgg 191  Q
    ||||||||||||  |||||| ||||| ||||| |||||||||||||||||||||||||    |||| ||||| ||||||| || | |||| || ||||||    
T  25983565 cattttaactgagtcttttgttcatt-cacacatattaagaaaaagtgtataagtgaa----agagtaaaattgttttaagtgtc-ttattaagtattgg 25983658  T
Q  192 tgtatttttctttagcataaatacaaagtagaatatgttgaatt 235  Q
    || |||  | |||| ||||||| |||| ||||||||||||||||    
T  25983659 tgcattcatttttatcataaatgcaaaatagaatatgttgaatt 25983702  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #29
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 114 - 236
Target Start/End: Original strand, 27209921 - 27210042
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    ||||| |||| ||||||||||| |||||||| |||||| |||||||||||| |||| | || ||||  ||| |||||||| ||| ||||||| |||||||    
T  27209921 cattttacacatattaagaaaa-gtgtataaatgaaagagagagaaaaatgattttgagtgtctttgacaagtattggtgcattcttctttatcataaat 27210019  T
Q  214 acaaagtagaatatgttgaattg 236  Q
      |||| ||||||| ||||||||    
T  27210020 gtaaaggagaatatattgaattg 27210042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #30
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 705303 - 705424
Alignment:
Q  115 atttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaata 214  Q
    |||||| || |||||||||||| ||||||||| |||| || ||||||||| |||| |||| |||||| || |||| ||| ||| ||||||| |||| ||     
T  705303 atttcatacatattaagaaaaaatgtataagttaaagagaaagaaaaatgattttgaatgtctttattaagtattagtgcattcttctttatcatagatg 705402  T
Q  215 caaagtagaatatgttgaattg 236  Q
     |||||| ||||| ||||||||    
T  705403 taaagtataatatattgaattg 705424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #31
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 77 - 213
Target Start/End: Original strand, 36326122 - 36326257
Alignment:
Q  77 gtacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcc 176  Q
    ||||| ||||| ||||| ||||||||| ||  |||  ||||||||||  |||||||||| |||||||| |||||| ||||||| ||||||||| | || |    
T  36326122 gtactccctccatcccagtttaactgagccagttgaacatttcacacagattaagaaaa-gtgtataaatgaaagagagagaacaatggttttgagtgtc 36326220  T
Q  177 tttatcaactattggtgtatttttctttagcataaat 213  Q
    ||| |||| |||||||| ||| || |||| |||||||    
T  36326221 tttgtcaaatattggtgcattcttgtttatcataaat 36326257  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #32
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 241
Target Start/End: Original strand, 2219366 - 2219528
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| |||||  |||| |||||| |||  |||||||||||| |||||| |||  ||||||| |||||| ||||||| |||| |||| | || ||    
T  2219366 tactccctccgtcccagattaattgaaccattttttcatttcacactgattaagtaaat-tgtataaatgaaagagagagaataatgattttgagtgtct 2219464  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagt 241  Q
    |||| ||  |||| || ||| ||||||| |||||||  |||||| ||||| |||||||||||||    
T  2219465 ttataaaagattgatgcattcttctttatcataaatgtaaagtaaaatatattgaattggaagt 2219528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #33
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 113 - 232
Target Start/End: Original strand, 13409730 - 13409849
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    ||||||||||  |||||||||||| | ||||||||||||| |||||||||| ||||||   |  ||||| || ||||| || ||||||||||| ||||||    
T  13409730 tcatttcacatatattaagaaaaaatatataagtgaaaggaagagaaaaatagttttactagtatttattaagtattgatgcatttttctttatcataaa 13409829  T
Q  213 tacaaagtagaatatgttga 232  Q
    ||  | ||||||||| ||||    
T  13409830 tatgaggtagaatatattga 13409849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #34
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 213
Target Start/End: Original strand, 28706577 - 28706675
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    |||||||||| |||||| ||||| ||||||| ||||   ||||||||||||||||| | ||||||| |||| ||||| || ||||||||||| |||||||    
T  28706577 catttcacacatattaaaaaaaa-tgtataaatgaataagagagaaaaatggttttgagtgcctttgtcaagtattgatgcatttttctttatcataaat 28706675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #35
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 243
Target Start/End: Complemental strand, 32348390 - 32348244
Alignment:
Q  96 ttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgta 195  Q
    |||||||| || ||||||||  |||||| |||||||| ||| ||||||| |||| | ||||||||||||||||||| |||  || | || ||||||| ||    
T  32348390 ttaactgagccatttgctcaaatcacacatattaagacaaa-tgtataaatgaaggagagagaaaaatggttttaagtgctcttgttaagtattggtcta 32348292  T
Q  196 tttttctttagcataaatacaaagtagaatatgttgaattggaagtga 243  Q
    |||| |  || || |||| |||||| |||||| ||||||||| |||||    
T  32348291 ttttccactatcacaaatgcaaagtggaatatattgaattgggagtga 32348244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #36
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 133 - 242
Target Start/End: Complemental strand, 14352705 - 14352593
Alignment:
Q  133 aaaagtgtataagtgaaagggagagaaaaa---tggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgt 229  Q
    |||||||||||| |||||  ||||||||||   ||||||| | || |||| |||| |||||||| ||| ||||||| | |||||| |||||||||||| |    
T  14352705 aaaagtgtataaatgaaatagagagaaaaaaaatggttttgagtgtctttgtcaagtattggtgcattcttctttatcgtaaatataaagtagaatatat 14352606  T
Q  230 tgaattggaagtg 242  Q
    |||||||| ||||    
T  14352605 tgaattgggagtg 14352593  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #37
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 4659585 - 4659529
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||||||||||||||||| ||||| |||||| ||||||||||||| |||||||    
T  4659585 catttcacacttattaagaaaaa-tgtattagtgaaggggagagaaaaatagttttaa 4659529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #38
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 37495963 - 37495861
Alignment:
Q  133 aaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttga 232  Q
    |||||||||||| |||||  ||||||||  || |||| |||| ||||||||| |||||||| ||| |||||||  ||||||  |||||||||||| ||||    
T  37495963 aaaagtgtataaatgaaaaagagagaaa--tgattttgaatgtctttatcaagtattggtgcattcttctttattataaatgtaaagtagaatatattga 37495866  T
Q  233 attgg 237  Q
    |||||    
T  37495865 attgg 37495861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #39
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 236
Target Start/End: Complemental strand, 27391507 - 27391380
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagc 207  Q
    |||| ||| ||||||||||||| |||||| |||||||||||| | |||||||||||| |||||| |||  |||| || |||||||  ||||    ||| |    
T  27391507 tttgttcaattcacacttattacgaaaaa-tgtataagtgaaggagagagaaaaatgattttaagtgctcttattaagtattggttcatttactattatc 27391409  T
Q  208 ataaatacaaagtagaatatgttgaattg 236  Q
    |||||| |||||| |||||| ||||||||    
T  27391408 ataaatgcaaagtggaatatattgaattg 27391380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #40
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 106 - 162
Target Start/End: Complemental strand, 34332272 - 34332217
Alignment:
Q  106 cttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaa 162  Q
    |||||| ||||||||||| |||||||||||| |||||||||||||| ||||||||||    
T  34332272 cttttgttcatttcacacatattaagaaaaa-tgtataagtgaaagagagagaaaaa 34332217  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #41
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 40061961 - 40061842
Alignment:
Q  116 tttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatac 215  Q
    ||||||||||||||| | ||| |||||||| |||   |||||||||||| |||||||||   ||||||| ||||| |  ||||||| ||| ||||||| |    
T  40061961 tttcacacttattaaaagaaa-tgtataagcgaagaagagagaaaaatgattttaaatgttcttatcaagtattgttacatttttcattatcataaatgc 40061863  T
Q  216 aaagtagaatatgttgaattg 236  Q
    ||| |||||||| ||||||||    
T  40061862 aaattagaatatattgaattg 40061842  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #42
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 40988506 - 40988450
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttt 169  Q
    ||||||||||| ||||||||||||  ||||||||||||| |||||| ||||||||||    
T  40988506 tcatttcacacatattaagaaaaatagtataagtgaaagagagagacaaatggtttt 40988450  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #43
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 49494114 - 49494173
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||||||| |||||||||||| ||||||| |||||| ||||||||||| |||||||    
T  49494114 gctcatttcacacgtattaagaaaaa-tgtataaatgaaagagagagaaaaatagttttaa 49494173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #44
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 220
Target Start/End: Complemental strand, 49945092 - 49944981
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagc 207  Q
    |||||||||||||||| |||||||||||| ||||||| ||||   ||||||||||||||||||| |||  || | || |||| ||| ||| |||| || |    
T  49945092 tttgctcatttcacacatattaagaaaaa-tgtataaatgaagaagagagaaaaatggttttaagtgctcttgttaagtatttgtgcattcttctctatc 49944994  T
Q  208 ataaatacaaagt 220  Q
    |||||| ||||||    
T  49944993 ataaatgcaaagt 49944981  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #45
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 237
Target Start/End: Original strand, 50267391 - 50267514
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    ||||||||||| |||||||||||| ||||||| |||||| ||||||||||| ||||||| |||  || | || |||||||| ||| | | ||| ||||||    
T  50267391 tcatttcacacgtattaagaaaaa-tgtataaatgaaagtgagagaaaaatagttttaagtgcacttgttaagtattggtgcattctccattatcataaa 50267489  T
Q  213 tacaaagtagaatatgttgaattgg 237  Q
    |  |||||  ||||| |||||||||    
T  50267490 tgtaaagtgaaatatattgaattgg 50267514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #46
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 133 - 237
Target Start/End: Complemental strand, 51049643 - 51049540
Alignment:
Q  133 aaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttga 232  Q
    |||||||||||| | |||| ||||||||||||||||| |||| ||||||||| | || ||| ||| || |||| |||||||  |||||| ||||| ||||    
T  51049643 aaaagtgtataaataaaagagagagaaaaatggttttgaatgtctttatcaagt-ttagtgcattcttttttatcataaatgtaaagtataatatattga 51049545  T
Q  233 attgg 237  Q
    |||||    
T  51049544 attgg 51049540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #47
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 106 - 169
Target Start/End: Complemental strand, 7224563 - 7224500
Alignment:
Q  106 cttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttt 169  Q
    |||||| ||||||||||| |||||| ||||| ||||||||||||||  || |||||||||||||    
T  7224563 cttttgttcatttcacacatattaaaaaaaaatgtataagtgaaagaaagcgaaaaatggtttt 7224500  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #48
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 40 - 79
Target Start/End: Complemental strand, 29051421 - 29051382
Alignment:
Q  40 aatattcaagtcctaaaacgtttaattgcccaaaaaagta 79  Q
    ||||||||||||||||||||||||| ||||||||||||||    
T  29051421 aatattcaagtcctaaaacgtttaagtgcccaaaaaagta 29051382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #49
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 243
Target Start/End: Complemental strand, 29225942 - 29225779
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagaga-aaaatggttttaaatgcc 176  Q
    |||| ||||| |||||| |||||||| | ||||| | |||| ||||  |||||||||||||||| ||||||||| |||||| ||||| | ||| | || |    
T  29225942 tactccctccgtcccatgttaactgagcattttgttaattttacac--attaagaaaaagtgtacaagtgaaagagagagagaaaataggtttgagtgtc 29225845  T
Q  177 tttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtga 243  Q
     || |||| |||||||| |||  |  ||| ||||||| ||||||||||||| ||||||||| |||||    
T  29225844 -ttgtcaagtattggtgcattcattcttatcataaatgcaaagtagaatatattgaattgggagtga 29225779  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #50
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 33149389 - 33149306
Alignment:
Q  153 gagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    ||||||||||||| ||| | || | |||| || |||||||| ||| ||||||| ||||||| ||||||||||||| ||||||||    
T  33149389 gagagaaaaatggatttgagtgtccttattaattattggtggattcttctttatcataaatgcaaagtagaatatattgaattg 33149306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #51
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 44580676 - 44580558
Alignment:
Q  111 gctcatttcacacttat--taag--aaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttag 206  Q
    |||||||||||||||||  ||||  ||| || |||||||||||||  |||||||||||| ||  | || | |||||||||||| ||| |||||| ||||     
T  44580676 gctcatttcacacttatattaagtgaaagagagtataagtgaaag--agagaaaaatgggttagagtgaccttatcaactatttgtgcatttttttttat 44580579  T
Q  207 cataaatacaaagtagaatat 227  Q
    ||||||| |||||||||||||    
T  44580578 cataaatgcaaagtagaatat 44580558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #52
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 125 - 235
Target Start/End: Original strand, 45889212 - 45889322
Alignment:
Q  125 tattaagaaaaagtgtataagtgaaagg-gagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtaga 223  Q
    |||||||| ||| ||||||| ||||||| ||||||||||||||||||| |||  || | |||||||||| |||| | | ||| ||||||| |||||| ||    
T  45889212 tattaagacaaa-tgtataaatgaaaggagagagaaaaatggttttaagtgctcttgttaactattggtctattctccattatcataaatgcaaagtgga 45889310  T
Q  224 atatgttgaatt 235  Q
    |||| |||||||    
T  45889311 atatattgaatt 45889322  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #53
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 113 - 214
Target Start/End: Original strand, 50773301 - 50773399
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    ||||||| ||||||||||||||| ||||||||||||||| |||||||   ||| ||| | |||  |||||||||||| ||||||| || | || ||||||    
T  50773301 tcatttcgcacttattaagaaaacgtgtataagtgaaagagagagaa---tgggtttgagtgctcttatcaactattagtgtattcttttctatcataaa 50773397  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #54
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Complemental strand, 2886262 - 2886204
Alignment:
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    |||||||||||||| | ||| ||||||| ||||||| ||||||||||||| ||||||||    
T  2886262 ttatcaactattggagcattcttctttatcataaatgcaaagtagaatatattgaattg 2886204  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #55
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 235
Target Start/End: Original strand, 21304760 - 21304880
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    ||||||||||   ||||||||||| ||||||| |||||| |||| |||| || |||| | || |||| |||| ||||| || ||||||||||| ||||||    
T  21304760 tcatttcacataaattaagaaaaa-tgtataaatgaaagagagataaaattg-ttttgagtgtctttgtcaagtattgatgcatttttctttatcataaa 21304857  T
Q  213 tacaaagtagaatatgttgaatt 235  Q
    || |||||| ||||| |||||||    
T  21304858 tataaagtataatatattgaatt 21304880  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #56
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 133 - 227
Target Start/End: Complemental strand, 9590650 - 9590554
Alignment:
Q  133 aaaagtgtataagtgaaagggagagaaaa--atggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatat 227  Q
    |||| ||||||| |||||| |||||| ||  |||||||||| ||||||| |||| |||| ||| ||| || |||| |||||||| ||||||||||||    
T  9590650 aaaattgtataaatgaaagagagagataataatggttttaagtgcctttgtcaagtatttgtgcattattatttatcataaatataaagtagaatat 9590554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #57
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 197
Target Start/End: Complemental strand, 40019919 - 40019831
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatt 197  Q
    |||| |||||| ||||| ||||||||||| |||||||||||| | ||||||||||| ||||||| |||  || |||| |||| |||||||    
T  40019919 tttgttcattttacactgattaagaaaaa-tgtataagtgaatgagagagaaaaattgttttaagtgctcttgtcaagtatttgtgtatt 40019831  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #58
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 32587921 - 32587798
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    |||||||||||| |||||||||||| ||||||| |||| | |||||||||||  |||||| ||  ||| | || ||||| || ||||| | ||| |||||    
T  32587921 ctcatttcacacatattaagaaaaa-tgtataaatgaaggtgagagaaaaataattttaagtgtttttgttaagtattgatgcattttccattatcataa 32587823  T
Q  212 atacaaagtagaatatgttgaattg 236  Q
    || ||||||  ||||| ||||||||    
T  32587822 atgcaaagtgaaatatattgaattg 32587798  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #59
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 36467146 - 36467205
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||||||| |||||||||||| ||||||| |||| | ||||||||||| |||||||    
T  36467146 gctcatttcacacgtattaagaaaaa-tgtataaatgaatgagagagaaaaatagttttaa 36467205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #60
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 243
Target Start/End: Complemental strand, 28839499 - 28839365
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagc 207  Q
    ||||||||  |||||  |||||||| ||| ||||||| |||| | ||||||||||| |||||||||||  || | || ||||||| |||| | |  || |    
T  28839499 tttgctcaaatcacatatattaagacaaa-tgtataaatgaaggagagagaaaaatagttttaaatgctcttgttaagtattggtctattctccactatc 28839401  T
Q  208 ataaatacaaagtagaatatgttgaattggaagtga 243  Q
    |||||| |||||| |||||| ||||||||| |||||    
T  28839400 ataaatgcaaagtggaatatattgaattgggagtga 28839365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #61
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 108 - 170
Target Start/End: Original strand, 5040523 - 5040584
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttta 170  Q
    |||||||||||||||| |||| ||| ||| ||||||| |||| | ||||||||||||||||||    
T  5040523 tttgctcatttcacacatatttagacaaa-tgtataaatgaatgagagagaaaaatggtttta 5040584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #62
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 113 - 171
Target Start/End: Complemental strand, 5442495 - 5442438
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||||| |||||||| ||| ||||||| |||| | |||||||||||||||||||    
T  5442495 tcatttcacacctattaagacaaa-tgtataaatgaatgagagagaaaaatggttttaa 5442438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #63
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 112 - 174
Target Start/End: Complemental strand, 6787403 - 6787342
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatg 174  Q
    |||||||||||| |||||||||||| | |||||  ||||| ||||||||||| ||||||||||    
T  6787403 ctcatttcacacgtattaagaaaaa-tatataaacgaaagagagagaaaaatagttttaaatg 6787342  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #64
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 135 - 237
Target Start/End: Original strand, 12267605 - 12267707
Alignment:
Q  135 aagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaat 234  Q
    ||||||||||   |||| || |||||||| ||||| | ||| ||| |||| |||||||  ||| ||||||| |||||||  |||||||||||| ||||||    
T  12267605 aagtgtataaagaaaagagaaagaaaaatagttttgagtgcatttttcaagtattggtacattcttctttatcataaatgtaaagtagaatatattgaat 12267704  T
Q  235 tgg 237  Q
    |||    
T  12267705 tgg 12267707  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #65
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 108 - 169
Target Start/End: Complemental strand, 25418802 - 25418743
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttt 169  Q
    ||||||||||||| || |||||||||||| | |||||||||||  ||||||||||| |||||    
T  25418802 tttgctcatttcatacatattaagaaaaattatataagtgaaa--gagagaaaaatagtttt 25418743  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #66
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 163
Target Start/End: Complemental strand, 39420750 - 39420692
Alignment:
Q  106 cttttgctcatttcacacttattaagaaaaa-gtgtataagtgaaagggagagaaaaat 163  Q
    |||||| ||||||||| | |||||||||||| |||||||| |||||| |||||||||||    
T  39420750 cttttgttcatttcacgcatattaagaaaaaagtgtataaatgaaagagagagaaaaat 39420692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #67
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 116 - 161
Target Start/End: Complemental strand, 2571514 - 2571469
Alignment:
Q  116 tttcacacttattaagaaaaagtgtataagtgaaagggagagaaaa 161  Q
    |||||||| |||||||||||| ||||||| |||||| |||||||||    
T  2571514 tttcacacatattaagaaaaaatgtataaatgaaagagagagaaaa 2571469  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #68
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 18186142 - 18186187
Alignment:
Q  105 ccttttgctcatttcacacttattaagaaaaagtgtataagtgaaa 150  Q
    |||||| |||||||||||| |||||||||||| ||||| |||||||    
T  18186142 ccttttactcatttcacacgtattaagaaaaattgtatgagtgaaa 18186187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #69
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 115 - 243
Target Start/End: Complemental strand, 27831997 - 27831872
Alignment:
Q  115 atttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaata 214  Q
    ||||||||  ||||||||||| ||| || ||||||||  |||||||||| ||||||| |||| || |||| |||||||| |||   | ||| |||||||     
T  27831997 atttcacaaatattaagaaaa-gtgcatgagtgaaag--agagaaaaatagttttaagtgcccttgtcaagtattggtgcattcaccattatcataaatg 27831901  T
Q  215 caaagtagaatatgttgaattggaagtga 243  Q
    |||||| ||| || ||||||||| |||||    
T  27831900 caaagtggaagatattgaattgggagtga 27831872  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #70
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 37525195 - 37525134
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgc 175  Q
    ||||||||||||  |||||||||||| ||||||| ||||  |||||||||||| |||||||||||    
T  37525195 gctcatttcacatgtattaagaaaaa-tgtataaatgaa--ggagagaaaaatagttttaaatgc 37525134  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #71
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 163
Target Start/End: Original strand, 28424279 - 28424327
Alignment:
Q  115 atttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaat 163  Q
    ||||||||| |||||||||||||||||||| | |||  |||||||||||    
T  28424279 atttcacacatattaagaaaaagtgtataaataaaatagagagaaaaat 28424327  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #72
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 42309589 - 42309528
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||| ||||||||||  |||||||||||| | |||||||||||  ||| |||||||||||||||    
T  42309589 tttgttcatttcacatatattaagaaaaaatatataagtgaaa--gagtgaaaaatggttttaa 42309528  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #73
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 158 - 234
Target Start/End: Complemental strand, 46968189 - 46968113
Alignment:
Q  158 aaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaat 234  Q
    |||||||||||||||||   || | || |||| |||||||| || ||| |||||||| |||||| ||||||||||||    
T  46968189 aaaaatggttttaaatgttattgttaagtattagtgtatttatcattatcataaatataaagtaaaatatgttgaat 46968113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #74
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 239
Target Start/End: Original strand, 52830365 - 52830492
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcata 210  Q
    ||||||||||||| |||||| ||||| ||||||| |||| | |||||||||||  |||| | ||| ||| | || |||||||| ||||| |  || ||||    
T  52830365 gctcatttcacacgtattaaaaaaaa-tgtataaatgaaggagagagaaaaataattttgagtgcatttgttaagtattggtgcattttccactatcata 52830463  T
Q  211 aatacaaagtagaatatgttgaattggaa 239  Q
    |||  ||||| |||||| || ||||||||    
T  52830464 aatgtaaagtggaatatattcaattggaa 52830492  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 93; Significance: 6e-45; HSPs: 51)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 93; E-Value: 6e-45
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 14690151 - 14689987
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||||||||||||| || ||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | || |     
T  14690151 tactccctccgtcccattttaactgagcccttgactcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttgagtgtcc 14690052  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    |||||||||||||||| ||| || |||| ||||||| ||||||||||||| ||||||||| ||||    
T  14690051 ttatcaactattggtgcattcttttttatcataaatgcaaagtagaatatattgaattgggagtg 14689987  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 8394180 - 8394329
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaaggga--gagaaaaatggttttaaatgcctttatcaact 186  Q
    |||||||||||||||||  ||  |||||||||||||||||||||||||||||||||||  ||| ||  ||||||||||  |||||||||  |||||||||    
T  8394180 tcccattttaactgaactcttaactcatttcacacttattaagaaaaagtgtataagtataagagaaagagaaaaatgagtttaaatgctcttatcaact 8394279  T
Q  187 attggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    ||||||| ||| ||||||| ||||||||||||||| ||||| ||||||||    
T  8394280 attggtgcattattctttatcataaatacaaagtaaaatatattgaattg 8394329  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 33743967 - 33743809
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgct-catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcc 176  Q
    |||||||||  ||||||||||| ||||| | ||||| ||||||||||||||||||||||||||||||| |||||| ||||||||||||| ||| | ||      
T  33743967 tacttcctcgatcccattttaattgaac-tcttgcttcatttcacacttattaagaaaaagtgtataaatgaaagagagagaaaaatgggtttgagtgta 33743869  T
Q  177 tttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
     |||||||||||| ||| ||| ||||||| ||||||||||||||||||||| || |||||    
T  33743868 cttatcaactatttgtgcattcttctttatcataaatacaaagtagaatatattaaattg 33743809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 14748620 - 14748780
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaa--agggagagaaaaatggttttaaatgc 175  Q
    |||| ||||| ||||||||||||||| || ||  ||||||| ||||||||||||||||||||||||||||||  || |||||||| |||| ||| | |||    
T  14748620 tactccctccgtcccattttaactgagcccttgactcattttacacttattaagaaaaagtgtataagtgaaagagagagagaaatatgggtttgagtgc 14748719  T
Q  176 ctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
      |||||||||||| ||| ||| ||||||| ||||||| ||||||||||||| ||||||||    
T  14748720 tcttatcaactattagtgcattcttctttatcataaatgcaaagtagaatatattgaattg 14748780  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 78 - 213
Target Start/End: Original strand, 32231302 - 32231437
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||||||||| ||| || ||  ||||||||||| ||||||||||||| |||||||||||||| ||||| ||||||||||| | ||||     
T  32231302 tactccctccgtcccattttaattgagcccttgtctcatttcacatttattaagaaaaaatgtataagtgaaagagagaggaaaatggttttgagtgccc 32231401  T
Q  178 ttatcaactattggtgtatttttctttagcataaat 213  Q
    ||||||||||||| |||||| ||||||| |||||||    
T  32231402 ttatcaactattgatgtattcttctttatcataaat 32231437  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 111 - 234
Target Start/End: Original strand, 45420888 - 45421011
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcata 210  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | |||| || |||||| |||| | ||| ||||||| ||||    
T  45420888 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcccttgtcaacttttggagcattcttctttatcata 45420987  T
Q  211 aatacaaagtagaatatgttgaat 234  Q
    ||| ||||||| ||||| ||||||    
T  45420988 aatgcaaagtaaaatatattgaat 45421011  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 111 - 227
Target Start/End: Original strand, 1494197 - 1494313
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcata 210  Q
    ||||||||||||||||||||| |||| |||||| ||||||| | |||||||||| |||| | |||| ||||||| ||||| || ||| ||||||| ||||    
T  1494197 gctcatttcacacttattaaggaaaaatgtatatgtgaaagagtgagaaaaatgattttgagtgcccttatcaattattgatgcattcttctttatcata 1494296  T
Q  211 aatacaaagtagaatat 227  Q
    ||| |||||||||||||    
T  1494297 aatgcaaagtagaatat 1494313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 25174519 - 25174659
Alignment:
Q  96 ttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgta 195  Q
    |||||||| |||||  ||||||||| | ||||||||||||| ||||||||| |||| |||| || |||| |||| | |||| |||| ||||||||||| |    
T  25174519 ttaactgagcctttgactcatttcatatttattaagaaaaaatgtataagtaaaagagagaaaagaatgattttgagtgcccttattaactattggtgca 25174618  T
Q  196 tttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    || |||||||  |||||| ||||||||||||| ||||||||    
T  25174619 ttattctttattataaatgcaaagtagaatatattgaattg 25174659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 457 - 615
Target Start/End: Original strand, 1344916 - 1345072
Alignment:
Q  457 ttcttagttcaaattcatacttttatttattttgactttttggttgattttagtgtaatattcaatttagataatattgggataatttatttcacttttg 556  Q
    ||||||||| ||||||||| |||||||||| ||| ||||| |||| ||||||||| |||||||||||||||||| || |||||  |||| |||||||||     
T  1344916 ttcttagtt-aaattcatatttttatttatcttggctttt-ggtttattttagtggaatattcaatttagataacatagggatcttttaattcacttttt 1345013  T
Q  557 cccttccatcgtttaagagaatccgagttgaaacctagtcgaaaaaatcattggtcaga 615  Q
    ||| ||||||| |||||| ||||| |||   || ||| ||| || ||||||||||||||    
T  1345014 cccatccatcgattaagaaaatcctagtacgaatctaatcggaataatcattggtcaga 1345072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 96 - 242
Target Start/End: Complemental strand, 5392221 - 5392076
Alignment:
Q  96 ttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgta 195  Q
    |||||||| || |||||||||||||||| |||||||| ||| ||||||| |||| | ||||||||||||||||||| ||| ||| |||| |||||||| |    
T  5392221 ttaactgagccatttgctcatttcacacctattaagacaaa-tgtataaatgaaggagagagaaaaatggttttaagtgcttttgtcaagtattggtgca 5392123  T
Q  196 tttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    || | |  || ||||||| |||||| |||||| ||||||||| ||||    
T  5392122 ttctccactatcataaatgcaaagtggaatatattgaattgggagtg 5392076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #11
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 886397 - 886522
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcata 210  Q
    ||||||||||||||||||||||||||||||| ||||||||| |||||  |||||  ||| | || | |||||||||||  ||| ||| ||||||| ||||    
T  886397 gctcatttcacacttattaagaaaaagtgtacaagtgaaagagagagggaaatgagtttgattgtccttatcaactatctgtgcattcttctttatcata 886496  T
Q  211 aatacaaagtagaatatgttgaattg 236  Q
    ||| ||||||||||||| | ||||||    
T  886497 aatgcaaagtagaatatatcgaattg 886522  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #12
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 89 - 242
Target Start/End: Original strand, 8566041 - 8566191
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactat 188  Q
    |||||||||||||||  | ||  |||||||||||||||||||||||| ||||||||||||||| | ||||||||||  ||| | |||| |||||||||||    
T  8566041 tcccattttaactgagtcattgactcatttcacacttattaagaaaacgtgtataagtgaaagagggagaaaaatgtgtttgagtgcccttatcaactat 8566140  T
Q  189 tggtg--tatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    || ||  | |||||||||| |||||||     | ||||||| ||||||||||||||    
T  8566141 tgatgcatttttttctttatcataaat-----gcagaatatattgaattggaagtg 8566191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 116 - 243
Target Start/End: Complemental strand, 2195620 - 2195494
Alignment:
Q  116 tttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatac 215  Q
    |||||||| ||||||||||||||||||||||||||| ||||||||||| ||||| | || | || | || |||||||| ||| ||  ||| ||||||| |    
T  2195620 tttcacacatattaagaaaaagtgtataagtgaaagagagagaaaaatagttttgagtgtc-ttgttaagtattggtgcattctttcttatcataaatgc 2195522  T
Q  216 aaagtagaatatgttgaattggaagtga 243  Q
    |||||||||||| ||||||||| |||||    
T  2195521 aaagtagaatatattgaattgggagtga 2195494  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #14
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 39998342 - 39998196
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactat 188  Q
    ||||| ||||| ||| || ||| ||||||||| || ||||||||||| | |||||| |||||| |||||||||||| |||||| || ||||||||| |||    
T  39998342 tcccagtttaattgagccattttctcatttcatacatattaagaaaa-gagtataaatgaaagagagagaaaaatgattttaagtgtctttatcaagtat 39998244  T
Q  189 tggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    | | | ||| ||||||| |||||||  |||||||||||| ||||||||    
T  39998243 ttgagcattcttctttatcataaatgtaaagtagaatatattgaattg 39998196  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #15
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 108 - 243
Target Start/End: Original strand, 42412330 - 42412464
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagc 207  Q
    |||||||||||||||| |||||||||||| |||||||||||| | ||||||||||| ||||||| |||  || |||  |||||||| ||| | | ||| |    
T  42412330 tttgctcatttcacacatattaagaaaaa-tgtataagtgaatgagagagaaaaatagttttaagtgctcttgtcatatattggtgcattctccattatc 42412428  T
Q  208 ataaatacaaagtagaatatgttgaattggaagtga 243  Q
    |||||| |||||| |||||| ||||||||| |||||    
T  42412429 ataaatgcaaagtggaatatattgaattgggagtga 42412464  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 114 - 235
Target Start/End: Complemental strand, 29638455 - 29638335
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    ||||||||||  |||||||||| |||||||| ||||||  |||||||||||||||| ||||||||| |||| |||||||  ||| ||||||| |||||||    
T  29638455 catttcacacagattaagaaaa-gtgtataaatgaaagaaagagaaaaatggttttgaatgcctttgtcaagtattggttcattattctttatcataaat 29638357  T
Q  214 acaaagtagaatatgttgaatt 235  Q
      |||||| ||||| |||||||    
T  29638356 gtaaagtataatatattgaatt 29638335  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #17
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 133 - 241
Target Start/End: Complemental strand, 14117598 - 14117490
Alignment:
Q  133 aaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttga 232  Q
    ||||||||||||  ||||| ||||||||| | ||||| | ||||||| |||| |||||||||||| ||||||| |||||||  ||||| |||||| ||||    
T  14117598 aaaagtgtataaaggaaagagagagaaaattagttttgagtgcctttttcaagtattggtgtattcttctttatcataaatgtaaagttgaatatattga 14117499  T
Q  233 attggaagt 241  Q
    |||| ||||    
T  14117498 attgaaagt 14117490  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #18
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 29451540 - 29451382
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaa---gtgtataagtgaaagggagagaaaaatggttttaaatg 174  Q
    |||||||||| |||||||||||| |||||||||| ||||||||||| ||||||||||||    ||||||| |||||  ||||||||||| ||||| ||      
T  29451540 tacttcctccatcccattttaaccgaaccttttgttcatttcacacatattaagaaaaaatgatgtataaatgaaa--gagagaaaaatagttttgaa-c 29451444  T
Q  175 cctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
      ||| |||| |||| ||||||| ||  ||| ||||||| ||||||| ||||| ||||||||    
T  29451443 attttgtcaagtattagtgtattctttcttatcataaatccaaagtataatatattgaattg 29451382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #19
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 28791462 - 28791340
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    ||||||||||  |||||||||| ||||||||   |||| ||||||||||| ||||| | ||||||| |||| |||||||| ||| ||||||| |||||||    
T  28791462 catttcacacagattaagaaaa-gtgtataaagtaaagagagagaaaaatagttttgagtgcctttttcaagtattggtgcattcttctttatcataaat 28791364  T
Q  214 acaaagtagaatatgttgaattgg 237  Q
      ||| |||||||| |||||||||    
T  28791363 gtaaactagaatatattgaattgg 28791340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #20
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 116 - 235
Target Start/End: Original strand, 40077705 - 40077823
Alignment:
Q  116 tttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatac 215  Q
    |||||| | ||||||||||| |||||||| |||||| |||| ||||||| |||| | || |||| |||| |||||||| ||| ||||||| |||||||      
T  40077705 tttcactcatattaagaaaa-gtgtataaatgaaagagagaaaaaaatgattttgagtgtctttgtcaagtattggtgcattcttctttatcataaatgt 40077803  T
Q  216 aaagtagaatatgttgaatt 235  Q
    |||||||||||| |||||||    
T  40077804 aaagtagaatatattgaatt 40077823  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #21
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 27868271 - 27868399
Alignment:
Q  107 ttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttag 206  Q
    |||||||||||||||||||||||||||||| ||||| |||||| |   ||||||||||||||||  ||   || |||| ||||| |  |||| || |||     
T  27868271 ttttgctcatttcacacttattaagaaaaa-tgtattagtgaatgatggagaaaaatggttttacgtgttcttgtcaagtattgatccatttatcattat 27868369  T
Q  207 cataaatacaaagtagaatatgttgaattg 236  Q
    ||||||| ||||||||||||| ||||||||    
T  27868370 cataaatgcaaagtagaatatattgaattg 27868399  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #22
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 237
Target Start/End: Original strand, 27973609 - 27973761
Alignment:
Q  84 ctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatca 183  Q
    |||| ||||| ||||| ||| | |||||||||||||||||||||||||||||| ||||| |||||| |   ||||||||||||||||| ||   || |||    
T  27973609 ctccgtcccaatttaagtgagcattttgctcatttcacacttattaagaaaaa-tgtattagtgaaggatggagaaaaatggttttaagtgttcttgtca 27973707  T
Q  184 actattggtgtatttttctttagcataaatacaaagtagaatatgttgaattgg 237  Q
    | ||||| |  ||||  | ||| ||||||| ||||||||||||  |||||||||    
T  27973708 agtattgatccatttaccattatcataaatgcaaagtagaatacattgaattgg 27973761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 84 - 237
Target Start/End: Original strand, 28030878 - 28031030
Alignment:
Q  84 ctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatca 183  Q
    |||| ||||| ||||| ||| | |||||||||||||||||||||||||||||| ||||| |||||| |   ||||||||||||||||| ||   || |||    
T  28030878 ctccgtcccaatttaagtgagcattttgctcatttcacacttattaagaaaaa-tgtattagtgaaggatggagaaaaatggttttaagtgttcttgtca 28030976  T
Q  184 actattggtgtatttttctttagcataaatacaaagtagaatatgttgaattgg 237  Q
    | ||||| |  ||||  | ||| ||||||| ||||||||||||  |||||||||    
T  28030977 agtattgatccatttaccattatcataaatgcaaagtagaatacattgaattgg 28031030  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 112 - 227
Target Start/End: Original strand, 9734119 - 9734232
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    ||||||||||| ||||||| ||||| ||||||| ||||||  |||||||||||| ||| | |    |||||||||||||||| ||| ||||||| |||||    
T  9734119 ctcatttcacatttattaaaaaaaaatgtataaatgaaag--agagaaaaatggatttgagtattcttatcaactattggtgcattcttctttatcataa 9734216  T
Q  212 atacaaagtagaatat 227  Q
    || ||||||| |||||    
T  9734217 atgcaaagtaaaatat 9734232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #25
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 78 - 169
Target Start/End: Complemental strand, 2797230 - 2797139
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttt 169  Q
    |||| ||||| ||| ||| ||| ||| | ||||| ||||||||||  ||||||||||||||| |||||||||||  ||||||||||||||||    
T  2797230 tactccctccgtccaattataaatgagctttttgttcatttcacaactattaagaaaaagtgaataagtgaaagaaagagaaaaatggtttt 2797139  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #26
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 243
Target Start/End: Original strand, 7258314 - 7258448
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagc 207  Q
    |||||| |||||||||||||||| ||||| | ||| | |||| |  ||||||||||||||||||  ||  || |||| |||||||| |||| || ||| |    
T  7258314 tttgcttatttcacacttattaaaaaaaa-tatattaatgaaggaaagagaaaaatggttttaagcgctcttgtcaagtattggtgcatttatcattatc 7258412  T
Q  208 ataaatacaaagtagaatatgttgaattggaagtga 243  Q
    |||||| |||| |||||||| ||||||||| |||||    
T  7258413 ataaatgcaaactagaatatattgaattgggagtga 7258448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #27
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 81 - 151
Target Start/End: Complemental strand, 8840514 - 8840445
Alignment:
Q  81 ttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaag 151  Q
    ||||||| ||||||| ||| ||| ||||||| ||||||||||| |||||||||||| ||||||||||||||    
T  8840514 ttcctccgtcccattataagtgagccttttg-tcatttcacacatattaagaaaaattgtataagtgaaag 8840445  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #28
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 117 - 235
Target Start/End: Original strand, 15559086 - 15559203
Alignment:
Q  117 ttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaataca 216  Q
    |||||| ||||||||||||| ||||| |||||| | |||| ||||||| |||||| ||   || |||| |||||||||||||  | ||| ||||||| ||    
T  15559086 ttcacatttattaagaaaaa-tgtattagtgaaggagagacaaaaatgattttaagtgttcttgtcaagtattggtgtatttaccattatcataaatgca 15559184  T
Q  217 aagtagaatatgttgaatt 235  Q
    ||||||||||| |||||||    
T  15559185 aagtagaatatattgaatt 15559203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #29
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 88 - 242
Target Start/End: Complemental strand, 37459521 - 37459377
Alignment:
Q  88 ctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaacta 187  Q
    |||||||||||||| |  | || ||||||||||||||||||||| |||||||||||| |||||  |||| |||||||       |||  || ||||||||    
T  37459521 ctcccattttaactaagtcattggctcatttcacacttattaag-aaaagtgtataaatgaaaaagagaaaaaaatg-------atg--ttgatcaacta 37459432  T
Q  188 ttggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    ||| |||||| ||||||| ||||||| |||||| |||||| || |||||| ||||    
T  37459431 ttgatgtattcttctttatcataaatgcaaagttgaatatattaaattgggagtg 37459377  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 73 - 237
Target Start/End: Complemental strand, 41726714 - 41726553
Alignment:
Q  73 aaaagtacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaa 172  Q
    |||| |||| ||||| ||||| |||||||||||   ||   ||||||||||  ||||||||||| |||||||  |||||  ||||||| || ||||| |     
T  41726714 aaaattactccctccgtcccagtttaactgaactaattttccatttcacacagattaagaaaaa-tgtataaaagaaag--agagaaatatagttttgag 41726618  T
Q  173 tgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattgg 237  Q
    ||||||| |||| ||||| || ||| ||||||| |||||||  |||||||||||| |||||||||    
T  41726617 tgcctttttcaagtattgttgcattcttctttatcataaatgtaaagtagaatatattgaattgg 41726553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #31
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 36011909 - 36012001
Alignment:
Q  78 tacttcctccctcccattttaactgaac-cttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttt 169  Q
    |||||||||| ||||||||||| | ||  |||||| ||||||||||  | ||||||||| ||||||||||||||| || ||| ||||||||||    
T  36011909 tacttcctccgtcccattttaagtcaagtcttttgttcatttcacatatgttaagaaaatgtgtataagtgaaagagaaagagaaatggtttt 36012001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #32
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 335 - 382
Target Start/End: Original strand, 1354159 - 1354206
Alignment:
Q  335 tttgcagccattcaaagttgcattagaaaaaggaaccaaattgttctg 382  Q
    ||||||||||||||||||||||| ||||||| ||||||||||| ||||    
T  1354159 tttgcagccattcaaagttgcataagaaaaatgaaccaaattgatctg 1354206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #33
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 106 - 184
Target Start/End: Original strand, 325028 - 325105
Alignment:
Q  106 cttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaa 184  Q
    |||||| |||||||| || |||||||| ||| ||||||||||||| ||| |||||||||||||| | ||||||| ||||    
T  325028 cttttgttcatttcaaacatattaagacaaa-tgtataagtgaaaaggaaagaaaaatggttttgattgcctttgtcaa 325105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 111 - 237
Target Start/End: Complemental strand, 29615955 - 29615830
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcata 210  Q
    ||||||||||||| |||||||||||| ||||||| |||| | |||||||||||  ||||||||||  || | || |||||||||| ||| |  |  ||||    
T  29615955 gctcatttcacacgtattaagaaaaa-tgtataaatgaaggagagagaaaaataattttaaatgcacttgttaagtattggtgtactttccactgtcata 29615857  T
Q  211 aatacaaagtagaatatgttgaattgg 237  Q
    |||  ||||| |||||| |||||||||    
T  29615856 aatgtaaagtggaatatattgaattgg 29615830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #35
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 139 - 237
Target Start/End: Original strand, 41759607 - 41759705
Alignment:
Q  139 gtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattgg 237  Q
    ||||| ||||||| |||| |||||||  ||| | || | || |||| |||||||| ||| ||||||| ||||||||||||||| ||||| |||||||||    
T  41759607 gtatatgtgaaagagagaaaaaaatgagtttgagtgtccttgtcaattattggtgcattcttctttatcataaatacaaagtaaaatatattgaattgg 41759705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 167
Target Start/End: Original strand, 2875005 - 2875094
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtt 167  Q
    |||| ||||| ||||||| ||| | | | ||||| ||||||||||  ||||||||||| ||| |||||||||||  ||||||||||||||    
T  2875005 tactccctccgtcccattataaataagctttttgttcatttcacaactattaagaaaaggtgaataagtgaaagaaagagaaaaatggtt 2875094  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #37
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 119 - 236
Target Start/End: Original strand, 5423122 - 5423238
Alignment:
Q  119 cacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaa 218  Q
    ||||| |||||||| ||| || ||||||||||| |||||||||||| |||| | || | || ||||  ||||||||||||  | ||| ||||||||||||    
T  5423122 cacacatattaagataaa-tgcataagtgaaagagagagaaaaatgattttgagtgtccttgtcaagcattggtgtatttaccattatcataaatacaaa 5423220  T
Q  219 gtagaatatgttgaattg 236  Q
    || ||| || ||||||||    
T  5423221 gtggaagatattgaattg 5423238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #38
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 115 - 227
Target Start/End: Complemental strand, 26677227 - 26677115
Alignment:
Q  115 atttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatg-gttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    ||||||||| |||||||||||| |||||||||||||| |||||||||||  ||||||| || | || | || |||||||| |||   | ||| |||||||    
T  26677227 atttcacacatattaagaaaaa-tgtataagtgaaagagagagaaaaatttgttttaagtgtcattgtaaaatattggtgcattcaccattatcataaat 26677129  T
Q  214 acaaagtagaatat 227  Q
     |||||||||||||    
T  26677128 gcaaagtagaatat 26677115  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 139178 - 139055
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    |||||||||||| |||||||||||| ||||||| |||| | |||| ||||||| |||||||| |  || | || |||||||| ||||| |  || |||||    
T  139178 ctcatttcacacatattaagaaaaa-tgtataaatgaatgagagataaaaatgattttaaattctcttgttaagtattggtgcattttccgctatcataa 139080  T
Q  212 atacaaagtagaatatgttgaattg 236  Q
    || |||||| ||||||  |||||||    
T  139079 atgcaaagtggaatataatgaattg 139055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #40
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 101 - 236
Target Start/End: Complemental strand, 11637308 - 11637173
Alignment:
Q  101 tgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaa-agggagagaaaaatggttttaaatgcctttatcaactattggtgtatttt 199  Q
    ||||| ||||| |||| |||||| |||||||||||||||||||||| ||    ||||||||||| ||||| | || ||||  ||| ||||| |  ||| |    
T  11637308 tgaacattttgttcatgtcacacatattaagaaaaagtgtataagtaaattaagagagaaaaat-gttttgagtgtctttgccaagtattgatacattat 11637210  T
Q  200 tctttagcataaatacaaagtagaatatgttgaattg 236  Q
    |||||| |||||||  |||||||||||| ||||||||    
T  11637209 tctttatcataaatgtaaagtagaatatattgaattg 11637173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 37703147 - 37703085
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||| ||||||||||| |||||||||||| |||||||| ||||  |||||||||||| ||||||    
T  37703147 tttgatcatttcacacatattaagaaaaa-tgtataagcgaaaaagagagaaaaatgattttaa 37703085  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #42
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 5878196 - 5878300
Alignment:
Q  133 aaaagtgtataagtgaaagggaga--gaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgtt 230  Q
    |||||||||||| |||||| ||||  |||||||||||||||||| |||| |||| |||| ||  ||| | | ||| |||||||  |||||||||||| ||    
T  5878196 aaaagtgtataaatgaaagagagagagaaaaatggttttaaatgtctttgtcaagtattagttcattctac-ttatcataaatgtaaagtagaatatatt 5878294  T
Q  231 gaattg 236  Q
    ||||||    
T  5878295 gaattg 5878300  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #43
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 193
Target Start/End: Complemental strand, 12653844 - 12653763
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtg 193  Q
    ||||||||||||| |||||||||||| ||||||| ||||   ||||||||||| ||||||| ||| ||| | || ||||||||    
T  12653844 gctcatttcacacgtattaagaaaaa-tgtataaatgaagtagagagaaaaatagttttaagtgcgtttgttaaatattggtg 12653763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #44
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 118 - 236
Target Start/End: Complemental strand, 28802917 - 28802800
Alignment:
Q  118 tcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaa 217  Q
    |||||| |||||||| ||| ||||||| |||||| ||||||||||||||||||| |||  || | || ||||| | |||| | |  || ||||||| |||    
T  28802917 tcacacgtattaagacaaa-tgtataaatgaaagagagagaaaaatggttttaagtgctcttgttaagtattgatctattctccactatcataaatgcaa 28802819  T
Q  218 agtagaatatgttgaattg 236  Q
    ||| |||||| ||||||||    
T  28802818 agtggaatatattgaattg 28802800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 156 - 236
Target Start/End: Original strand, 325110 - 325190
Alignment:
Q  156 agaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    |||||||||||||| | ||||||| |||| |||||||| |||   | ||| |||||||| ||||| |||||| ||||||||    
T  325110 agaaaaatggttttgattgcctttgtcaagtattggtgcattcaccgttatcataaatataaagtggaatatattgaattg 325190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #46
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 311 - 343
Target Start/End: Original strand, 1354105 - 1354137
Alignment:
Q  311 agtacaattttttcagctagtcattttgcagcc 343  Q
    ||||||||||||||||||||||||||| |||||    
T  1354105 agtacaattttttcagctagtcatttttcagcc 1354137  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #47
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 162
Target Start/End: Original strand, 10728885 - 10728921
Alignment:
Q  126 attaagaaaaagtgtataagtgaaagggagagaaaaa 162  Q
    |||||||||||||||||||||||||| |||| |||||    
T  10728885 attaagaaaaagtgtataagtgaaagagagaaaaaaa 10728921  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #48
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 105 - 149
Target Start/End: Complemental strand, 33890522 - 33890478
Alignment:
Q  105 ccttttgctcatttcacacttattaagaaaaagtgtataagtgaa 149  Q
    ||||||||||||||||||| ||||||||| || ||||||| ||||    
T  33890522 ccttttgctcatttcacacgtattaagaataaatgtataaatgaa 33890478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #49
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 108 - 160
Target Start/End: Original strand, 36649664 - 36649715
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaa 160  Q
    |||| |||||| ||||||||||||||||| |||| ||||||||| ||||||||    
T  36649664 tttgttcattttacacttattaagaaaaa-tgtaaaagtgaaagagagagaaa 36649715  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #50
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 125 - 173
Target Start/End: Original strand, 44225885 - 44225933
Alignment:
Q  125 tattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaat 173  Q
    ||||||||||||||||||| |||||||  ||||||||||  ||||||||    
T  44225885 tattaagaaaaagtgtatacgtgaaagaaagagaaaaataattttaaat 44225933  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #51
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 113 - 237
Target Start/End: Original strand, 44790374 - 44790497
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    ||||||||||| |||||||| ||| ||||||| |||| | ||||||||||| ||||||| |||  || | || |||||||| ||| | |  || ||||||    
T  44790374 tcatttcacacgtattaagacaaa-tgtataaatgaaggagagagaaaaatagttttaagtgcacttgttaagtattggtgcattctccactatcataaa 44790472  T
Q  213 tacaaagtagaatatgttgaattgg 237  Q
    |  ||||| |||||| |||||||||    
T  44790473 tgtaaagtggaatatattgaattgg 44790497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 89; Significance: 1e-42; HSPs: 52)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 28330985 - 28330821
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||||||||||||| || ||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | ||||     
T  28330985 tactccctccgtcccattttaactgagccattgactcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgccc 28330886  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    |||||||||||||||| ||| ||||||| ||||||| ||||| ||| ||| ||||||||| ||||    
T  28330885 ttatcaactattggtgcattcttctttatcataaatgcaaagcagattatattgaattgggagtg 28330821  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 89 - 237
Target Start/End: Complemental strand, 8759959 - 8759811
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactat 188  Q
    |||||||||||| ||||||||| ||||||||| ||||||||| ||||||||||||| |||||| ||||||||||||| ||| | | |  |||||||||||    
T  8759959 tcccattttaaccgaaccttttactcatttcaaacttattaaaaaaaagtgtataaatgaaagagagagaaaaatgggtttcagttcacttatcaactat 8759860  T
Q  189 tggtgtatttttctttagcataaatacaaagtagaatatgttgaattgg 237  Q
    || || ||||||||||| ||||||| ||||||||||||| |||||||||    
T  8759859 tgatgcatttttctttatcataaatgcaaagtagaatatattgaattgg 8759811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 20964204 - 20964368
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||||||||||||| |  ||  |||||||||||||||||||||||||||||||||||||||| ||||||||||||  |||   || ||    
T  20964204 tactccctccgtcccattttaactgagctcttgactcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgagtttgcgtgtct 20964303  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    |||||||||||||||| ||| ||||||| | ||||| ||||||||||||| | ||||||||||||    
T  20964304 ttatcaactattggtgcattcttctttatcgtaaatgcaaagtagaatatatcgaattggaagtg 20964368  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 37315838 - 37316002
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaa-gtgtataagtgaaagggagagaaaaatggttttaaatgcc 176  Q
    |||| ||||| |||| |||||| |||  |||| |||||||| ||||||||||||||||| ||| ||||||||||| |||||||||||||||||  |||||    
T  37315838 tactccctccgtcccgttttaattgagactttggctcatttaacacttattaagaaaaaagtg-ataagtgaaagagagagaaaaatggttttggatgcc 37315936  T
Q  177 tttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
     |||| ||||||| ||| ||||||||||| ||||||| ||||||||||||||||||||||| ||||    
T  37315937 cttattaactattagtgcatttttctttatcataaatgcaaagtagaatatgttgaattgggagtg 37316002  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 38320065 - 38319944
Alignment:
Q  115 atttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaata 214  Q
    |||||||| |||||||||||||||||||||||||||| ||||||||||||| ||| | |||| |||||||||||||||| ||| ||||||| |||||||     
T  38320065 atttcacatttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcccttatcaactattggtgcattcttctttatcataaatg 38319966  T
Q  215 caaagtagaatatgttgaattg 236  Q
    ||||||||||||| ||||||||    
T  38319965 caaagtagaatatattgaattg 38319944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 32949775 - 32949923
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatgg-ttttaaatgcctttatcaacta 187  Q
    ||||||||||||||| |||||  ||||||||||||||||||| ||||||||||||| |||||  || |||||||||| |||| | || ||||||||||||    
T  32949775 tcccattttaactgagcctttgactcatttcacacttattaaaaaaaagtgtataaatgaaatagatagaaaaatggtttttgagtgtctttatcaacta 32949874  T
Q  188 ttggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    |||||| ||||||||||| |||||||  |||||||||||| ||||||||    
T  32949875 ttggtgcatttttctttatcataaatgtaaagtagaatatattgaattg 32949923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 74; E-Value: 1e-33
Query Start/End: Original strand, 112 - 242
Target Start/End: Complemental strand, 42132972 - 42132840
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaat--gcctttatcaactattggtgtatttttctttagcat 209  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||| | |  ||| |||| |||||||| || ||| ||||||| |||    
T  42132972 ctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggtttgagtgcgcccttataaactattgatgcattcttctttatcat 42132873  T
Q  210 aaatacaaagtagaatatgttgaattggaagtg 242  Q
    |||| ||||||||||||| ||||||||||||||    
T  42132872 aaatgcaaagtagaatatattgaattggaagtg 42132840  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 66; E-Value: 8e-29
Query Start/End: Original strand, 111 - 236
Target Start/End: Original strand, 49218732 - 49218856
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcata 210  Q
    ||||||||||||||||||||||||||||||||||||||||| ||||||||||||| ||  | |||| |||||| ||||||||| | || |||||| ||||    
T  49218732 gctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatgggttagagtgcccttatcagctattggtgca-ttctctttatcata 49218830  T
Q  211 aatacaaagtagaatatgttgaattg 236  Q
    ||| ||||||| ||||| ||||||||    
T  49218831 aattcaaagtataatatattgaattg 49218856  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 92 - 236
Target Start/End: Complemental strand, 53848823 - 53848679
Alignment:
Q  92 cattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattgg 191  Q
    |||||||| ||| | ||| | |||||||||  |||||||||||||||||||||||| ||| |||| ||||||| |||| | |||| ||||||||||||||    
T  53848823 cattttaattgagcttttggttcatttcacgtttattaagaaaaagtgtataagtgtaagagagaaaaaaatgattttgagtgcccttatcaactattgg 53848724  T
Q  192 tgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    || ||| || |||| ||||||| ||||||||||||| ||||||||    
T  53848723 tgcattattatttatcataaatgcaaagtagaatatattgaattg 53848679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 48400582 - 48400705
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    ||||||||||||  ||||||||||| ||||||| |||||| |||||||||||| |||| ||||| |||||||| ||||| |||||| ||||||| |||||    
T  48400582 ctcatttcacacagattaagaaaaa-tgtataaatgaaagagagagaaaaatgatttttaatgcttttatcaagtattgatgtattcttctttatcataa 48400680  T
Q  212 atacaaagtagaatatgttgaattg 236  Q
    ||  |||||||||||| ||||||||    
T  48400681 atgtaaagtagaatatattgaattg 48400705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 22020462 - 22020584
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    ||||||||||||||||||||||||||||||||| ||| || ||||| ||||||||||| | | ||||| ||||||||| ||  ||||||| ||| |||||    
T  22020462 ctcatttcacacttattaagaaaaagtgtataaatgagagtgagag-aaaatggttttgagttcctttgtcaactatttgtacatttttc-ttatcataa 22020559  T
Q  212 atacaaagtagaatatgttgaattg 236  Q
    || ||||||||||||| ||||||||    
T  22020560 atgcaaagtagaatatattgaattg 22020584  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 54; E-Value: 1e-21
Query Start/End: Original strand, 78 - 239
Target Start/End: Original strand, 25902378 - 25902539
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||||||||| ||||||  ||||||| | |||| |||||||||||| ||||||||||||||||||||||||||| |  || ||||||||||| | ||  |    
T  25902378 tacttcctccgtcccataataactgagcattttcctcatttcacacatattaagaaaaagtgtataagtgaaagaggaagtaaaatggttttgagtgttt 25902477  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaa 239  Q
    || | || |||| ||| ||| ||||||   ||||||| ||||| |||||| |||||||||||    
T  25902478 ttgttaagtattagtgcattcttctttgttataaatataaagttgaatatattgaattggaa 25902539  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 78 - 169
Target Start/End: Original strand, 5499349 - 5499440
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttt 169  Q
    |||| ||||| |||||||||||| || ||||||| |||||| |||| ||||||||||||||||||||||||||| || |||||||| |||||    
T  5499349 tactccctccgtcccattttaaccgagccttttgttcatttgacacatattaagaaaaagtgtataagtgaaagagaaagaaaaatagtttt 5499440  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 78 - 197
Target Start/End: Complemental strand, 54217562 - 54217441
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagag--aaaaatggttttaaatgc 175  Q
    |||| ||||| |||||||||||| |  |||||  ||||||||| |||||||||||||||||||||||||||||| |||||  |||||||| ||| | | |    
T  54217562 tactccctccgtcccattttaacggggcctttgactcatttcatacttattaagaaaaagtgtataagtgaaagagagagaaaaaaatgggtttgagtac 54217463  T
Q  176 ctttatcaactattggtgtatt 197  Q
    | || |||||||||||||||||    
T  54217462 ccttgtcaactattggtgtatt 54217441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 22872303 - 22872462
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatg--c 175  Q
    |||| ||||| |||||  |||| ||| || |||||||||||||||| |||||||||||| ||||||||||||   ||||||||||||||||||| ||  |    
T  22872303 tactccctccgtcccaaattaagtgagccatttgctcatttcacacatattaagaaaaa-tgtataagtgaagaagagagaaaaatggttttaagtgctc 22872401  T
Q  176 ctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
     ||| |||| |||||||| ||| | | ||| ||||||| |||||| |||||| ||||||||    
T  22872402 gtttgtcaagtattggtgcattctccattatcataaatgcaaagtggaatatattgaattg 22872462  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 133 - 242
Target Start/End: Original strand, 42051627 - 42051736
Alignment:
Q  133 aaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttga 232  Q
    |||||||||||| |||||| || |||||||||||||| | || ||||| ||| |||||||| ||| ||||||| |||||||  ||||||||||||  |||    
T  42051627 aaaagtgtataaatgaaagagatagaaaaatggtttttagtgtctttagcaagtattggtgcattcttctttatcataaatgtaaagtagaatataatga 42051726  T
Q  233 attggaagtg 242  Q
    ||||||||||    
T  42051727 attggaagtg 42051736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #17
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 92 - 163
Target Start/End: Original strand, 18872585 - 18872656
Alignment:
Q  92 cattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaat 163  Q
    |||||||| ||||| ||||| ||||||||||| ||||||||||||||||||||||||||| ||| |||||||    
T  18872585 cattttaagtgaacattttgttcatttcacacgtattaagaaaaagtgtataagtgaaagagagcgaaaaat 18872656  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #18
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 105 - 236
Target Start/End: Original strand, 47277625 - 47277756
Alignment:
Q  105 ccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttcttt 204  Q
    ||||||||||||||||||| |||||||||||| ||||||||| ||||  ||| ||||||  |||| |||||| || |||  |||| ||  ||||||||||    
T  47277625 ccttttgctcatttcacacatattaagaaaaaatgtataagtaaaagatagataaaaatatttttcaatgcccttgtcaggtatttgtacatttttcttt 47277724  T
Q  205 agcataaatacaaagtagaatatgttgaattg 236  Q
    | |||||||  |||||| ||||| ||||||||    
T  47277725 atcataaatgtaaagtaaaatatattgaattg 47277756  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #19
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 96 - 236
Target Start/End: Original strand, 4360343 - 4360482
Alignment:
Q  96 ttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgta 195  Q
    |||||||| || |||| ||||||||||| ||||||||||||  |||||| |||| |  |||||||||||||||||| ||| ||| | || |||||||| |    
T  4360343 ttaactgagccatttgttcatttcacacatattaagaaaaaa-gtataaatgaatgaaagagaaaaatggttttaagtgcttttgttaagtattggtgca 4360441  T
Q  196 tttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    || | |  |||||||||| |||||| |||||| ||||||||    
T  4360442 ttctccactagcataaatgcaaagtggaatatattgaattg 4360482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #20
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 78 - 178
Target Start/End: Original strand, 41594764 - 41594864
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||||| |||  || ||||||| ||||||||||  |||| ||||||||||| |||||||||| ||||||||||||||||| | |||||    
T  41594764 tactccctccgtcccattataagcgagccttttgttcatttcacatatattgagaaaaagtgtttaagtgaaagagagagaaaaatggttttgagtgcct 41594863  T
Q  178 t 178  Q
    |    
T  41594864 t 41594864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #21
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 96 - 243
Target Start/End: Complemental strand, 33047664 - 33047518
Alignment:
Q  96 ttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgta 195  Q
    |||||||| || || ||||||||||||| |||||||||||| |||||||   ||   ||||||||||||||||||| ||| ||| | || |||||||  |    
T  33047664 ttaactgagccattagctcatttcacacctattaagaaaaa-tgtataaacaaagaagagagaaaaatggttttaagtgcttttgttaagtattggtaga 33047566  T
Q  196 tttttctttagcataaatacaaagtagaatatgttgaattggaagtga 243  Q
    || | |  || |||||||||||||| |||||| |||||||||||||||    
T  33047565 ttctccactatcataaatacaaagtggaatatattgaattggaagtga 33047518  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #22
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 34790903 - 34791026
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    ||||| ||||| ||||||||||| |||||||| |||||| |||||||||||| |||| | ||| |||||||| |||| ||| ||| ||||||| ||||||    
T  34790903 tcattgcacacatattaagaaaa-gtgtataaatgaaagtgagagaaaaatgattttgagtgcttttatcaagtatttgtgcattcttctttatcataaa 34791001  T
Q  213 --tacaaagtagaatatgttgaattg 236  Q
      || |||||||||||| ||||||||    
T  34791002 agta-aaagtagaatatattgaattg 34791026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #23
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 95 - 236
Target Start/End: Original strand, 39052835 - 39052975
Alignment:
Q  95 tttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgt 194  Q
    ||||| |||||  ||| ||||||||||||  ||||||||||| ||||||| |||||| || | ||||| |  ||| | || ||||||||| ||||||||     
T  39052835 tttaattgaacaattttctcatttcacacagattaagaaaaa-tgtataaatgaaagagaaaaaaaaaagaatttgagtgtctttatcaagtattggtgc 39052933  T
Q  195 atttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    ||| ||||||| |||||||  |||||||||||| ||||||||    
T  39052934 attcttctttatcataaatgtaaagtagaatatattgaattg 39052975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #24
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 76 - 240
Target Start/End: Complemental strand, 28280029 - 28279866
Alignment:
Q  76 agtacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgc 175  Q
    |||||||||||| ||||| ||||||||| ||  ||   |||||||||   ||||||||||| |||||||   |||| || ||| |||| ||||| | ||     
T  28280029 agtacttcctccgtcccagtttaactgagccaattttccatttcacagagattaagaaaaa-tgtataaagaaaagagaaagagaaatagttttgagtgt 28279931  T
Q  176 ctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaag 240  Q
    |||| | || |||||||| ||||||||||| |||||||| |||||||||||| || |||||||||    
T  28279930 ctttgttaagtattggtgcatttttctttatcataaatataaagtagaatatatttaattggaag 28279866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #25
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 41436633 - 41436514
Alignment:
Q  116 tttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatac 215  Q
    |||||||| ||||||||||| |||||||||||| || |||| |||||||||||||| ||| ||| | |  |||||||| ||| | |  || ||||||| |    
T  41436633 tttcacacatattaagaaaa-gtgtataagtgagagagagaaaaaaatggttttaagtgcttttgttatgtattggtgcattctccactatcataaatgc 41436535  T
Q  216 aaagtagaatatgttgaattg 236  Q
    |||||||||||| ||||||||    
T  41436534 aaagtagaatattttgaattg 41436514  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #26
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 84 - 160
Target Start/End: Complemental strand, 46958904 - 46958828
Alignment:
Q  84 ctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaa 160  Q
    |||| |||| ||||||||||   ||||| ||||||||||| |||||||||||||||||||||||||||  |||||||    
T  46958904 ctccgtccccttttaactgagtattttgttcatttcacacatattaagaaaaagtgtataagtgaaagatagagaaa 46958828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #27
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 8295201 - 8295127
Alignment:
Q  96 ttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||||||| || ||||||||||||||||  ||||||||||| ||||||| |||||| ||||||||||| |||||||    
T  8295201 ttaactgagccatttgctcatttcacacaaattaagaaaaa-tgtataaatgaaagagagagaaaaattgttttaa 8295127  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #28
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 29550680 - 29550802
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    ||||||||||  ||||||||||| |||||||  ||||| ||||||||||| ||||| | ||||||| | || ||||| ||| |  ||||||| |||||||    
T  29550680 catttcacacagattaagaaaaa-tgtataaaggaaagagagagaaaaatagttttgagtgccttttttaagtattgatgtttcattctttatcataaat 29550778  T
Q  214 acaaagtagaatatgttgaattgg 237  Q
      |||||||||||| |||||||||    
T  29550779 gtaaagtagaatatattgaattgg 29550802  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #29
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 243
Target Start/End: Complemental strand, 41203897 - 41203763
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagc 207  Q
    ||||||| |||||||| |||||||||||| ||||||| |||| | || |||||||||||||| | |||  || | || ||||| || ||| |||  || |    
T  41203897 tttgctcgtttcacacgtattaagaaaaa-tgtataaatgaaggagatagaaaaatggtttttagtgctcttgttaagtattgatgcattcttcactacc 41203799  T
Q  208 ataaatacaaagtagaatatgttgaattggaagtga 243  Q
    ||||||||||||| |||||| |||||||| ||||||    
T  41203798 ataaatacaaagtggaatatattgaattgaaagtga 41203763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #30
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 105 - 150
Target Start/End: Original strand, 36045994 - 36046039
Alignment:
Q  105 ccttttgctcatttcacacttattaagaaaaagtgtataagtgaaa 150  Q
    ||||| ||||||||||||||||||||||||||||||||||| ||||    
T  36045994 cctttggctcatttcacacttattaagaaaaagtgtataagagaaa 36046039  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #31
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 108 - 236
Target Start/End: Complemental strand, 49448999 - 49448874
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagc 207  Q
    |||| ||||||||||  |||||||||||| |||||||||||| | ||||||||||||||||||| |||  || |||| |||| ||| ||| |   ||| |    
T  49448999 tttgttcatttcaca--tattaagaaaaa-tgtataagtgaaggagagagaaaaatggttttaagtgctcttgtcaagtatttgtgcattctctattatc 49448903  T
Q  208 ataaatacaaagtagaatatgttgaattg 236  Q
    |||||| ||||||| ||||| ||||||||    
T  49448902 ataaatgcaaagtataatatattgaattg 49448874  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #32
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 13530017 - 13529961
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttt 169  Q
    ||||||||||| |||||||||||| |||| ||| ||||| |||||||||||||||||    
T  13530017 tcatttcacacatattaagaaaaaatgtacaagcgaaagagagagaaaaatggtttt 13529961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #33
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 96 - 243
Target Start/End: Original strand, 42024136 - 42024282
Alignment:
Q  96 ttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgta 195  Q
    |||||||| || ||||||||  |||||| |||||||| ||| ||||||| |||| | ||||||||||||||||||| | |  || | || ||||||| ||    
T  42024136 ttaactgagccatttgctcaaatcacacatattaagacaaa-tgtataaatgaaggagagagaaaaatggttttaactactcttgttaagtattggtcta 42024234  T
Q  196 tttttctttagcataaatacaaagtagaatatgttgaattggaagtga 243  Q
    || | |  ||  |||||| |||||| |||||| |||||||||||||||    
T  42024235 ttctccactattataaatgcaaagtggaatatattgaattggaagtga 42024282  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #34
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 178 - 236
Target Start/End: Original strand, 36047116 - 36047174
Alignment:
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    |||||||||||| ||| ||| ||||||| ||||||| ||||||||||||| ||||||||    
T  36047116 ttatcaactattagtgcattcttctttatcataaatgcaaagtagaatatattgaattg 36047174  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #35
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 84 - 141
Target Start/End: Original strand, 11583647 - 11583704
Alignment:
Q  84 ctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgta 141  Q
    |||| |||||||||| |||| ||||| |||||||||||| ||||||||||||| ||||    
T  11583647 ctccgtcccattttagctgagcctttggctcatttcacatttattaagaaaaaatgta 11583704  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #36
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 108 - 243
Target Start/End: Original strand, 40020892 - 40021029
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaa-gtgta-taagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttcttta 205  Q
    |||| ||||||||||| |||||||||||| || || |||||||| | ||||||||||||||||| ||||  ||| |||| |||||||| ||||  | |||    
T  40020892 tttggtcatttcacacatattaagaaaaatgtatactaagtgaatgagagagaaaaatggttttgaatgtttttgtcaagtattggtgcatttaccatta 40020991  T
Q  206 gcataaatacaaagtagaatatgttgaattggaagtga 243  Q
     |||| || ||||  ||||||| || |||||| |||||    
T  40020992 tcatagatgcaaaaaagaatatattaaattgggagtga 40021029  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #37
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 164
Target Start/End: Complemental strand, 12619847 - 12619792
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatg 164  Q
    |||| |||||||| ||||||||||||||| |||||||||||||| | ||||||||||    
T  12619847 tttgttcatttcatacttattaagaaaaa-tgtataagtgaaagagcgagaaaaatg 12619792  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #38
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 236
Target Start/End: Complemental strand, 17237203 - 17237076
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagc 207  Q
    |||||||||||||||| |||||||||||| | ||||| |||| | ||||||||||| ||||||| ||  ||| | || |||| ||| ||| ||   || |    
T  17237203 tttgctcatttcacacctattaagaaaaa-tatataaatgaaggagagagaaaaatagttttaagtgattttgttaagtattagtggattctttactatc 17237105  T
Q  208 ataaatacaaagtagaatatgttgaattg 236  Q
    |||||| |||||| |||||| ||||||||    
T  17237104 ataaatgcaaagtggaatatattgaattg 17237076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #39
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 236
Target Start/End: Original strand, 38160099 - 38160226
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagc 207  Q
    ||||||||||| | |  |||||||||||| ||||||| | || | ||||||||||| ||||||| || |||| |||| ||||| || ||| | | ||| |    
T  38160099 tttgctcattttatatatattaagaaaaa-tgtataaataaaggagagagaaaaattgttttaagtgtctttgtcaaatattgatgcattctccattatc 38160197  T
Q  208 ataaatacaaagtagaatatgttgaattg 236  Q
    |||||||||||||  ||||| ||||||||    
T  38160198 ataaatacaaagtgaaatatattgaattg 38160226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #40
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 186 - 237
Target Start/End: Original strand, 10099749 - 10099800
Alignment:
Q  186 tattggtgtatttttctttagcataaatacaaagtagaatatgttgaattgg 237  Q
    |||||||| ||||||||||| |||||||  |||||||||||| |||||||||    
T  10099749 tattggtgcatttttctttatcataaatttaaagtagaatatattgaattgg 10099800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #41
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 84 - 243
Target Start/End: Original strand, 35027420 - 35027578
Alignment:
Q  84 ctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatca 183  Q
    |||| ||| |||||||||||   ||||| | ||||||||| |||||| ||||||||||||| |||||  | |||||||||  ||||||||| | || |||    
T  35027420 ctccatcctattttaactgagtattttgtttatttcacacatattaaaaaaaagtgtataattgaaaaagggagaaaaataattttaaatgtc-ttgtca 35027518  T
Q  184 actattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtga 243  Q
    | |||||||| |||| |  ||| ||||||  ||||||  ||||| || ||||| ||||||    
T  35027519 aatattggtgcatttattattatcataaacgcaaagttaaatatattaaattgaaagtga 35027578  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #42
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 133 - 236
Target Start/End: Original strand, 35998088 - 35998191
Alignment:
Q  133 aaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttga 232  Q
    |||||||||||| |||||| ||  |||||||  |||| | || ||||||||| |||||||  ||| ||||||| |||||||  |||||| ||||| ||||    
T  35998088 aaaagtgtataaatgaaagcgaacgaaaaataattttgagtgtctttatcaagtattggtacattcttctttatcataaatgtaaagtaaaatatattga 35998187  T
Q  233 attg 236  Q
    ||||    
T  35998188 attg 35998191  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #43
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 243
Target Start/End: Original strand, 41710091 - 41710225
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagc 207  Q
    ||||||||  |||||| |||||||| ||| ||||||| ||||   |||| |||||||||||||| |||  || | || ||||||| |||||| |  || |    
T  41710091 tttgctcaaatcacacatattaagacaaa-tgtataaatgaagcagagaaaaaaatggttttaagtgctcttgttaattattggtctattttccactatc 41710189  T
Q  208 ataaatacaaagtagaatatgttgaattggaagtga 243  Q
    |||||| |||||| |||||| ||||||||| |||||    
T  41710190 ataaatgcaaagtggaatatattgaattgggagtga 41710225  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #44
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 113 - 151
Target Start/End: Complemental strand, 1920884 - 1920846
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaag 151  Q
    ||||||||||| |||||||||||| ||||||||||||||    
T  1920884 tcatttcacacatattaagaaaaaatgtataagtgaaag 1920846  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #45
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 116 - 241
Target Start/End: Complemental strand, 25149604 - 25149479
Alignment:
Q  116 tttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttc-tttagcataaata 214  Q
    ||||||||  |||||||||| ||||||||   |||| ||||||||||| ||||| | ||||||| | || |||||||| |||  || |||| |||||||     
T  25149604 tttcacacagattaagaaaa-gtgtataacgaaaagagagagaaaaatagttttgagtgccttttttaagtattggtgcattcctcttttatcataaatg 25149506  T
Q  215 caaagtagaatatgttgaattggaagt 241  Q
     ||||| |||||| |||||||||||||    
T  25149505 taaagtggaatatattgaattggaagt 25149479  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #46
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 236
Target Start/End: Original strand, 54729434 - 54729558
Alignment:
Q  115 atttcacacttattaagaaa---aagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    ||||||||| ||||||||||   || ||||||| |||||| ||||||||||| ||||||| ||  ||| | || |||| ||||||| | |  || |||||    
T  54729434 atttcacacatattaagaaagaaaaatgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtattagtgtattctccactatcataa 54729533  T
Q  212 atacaaagtagaatatgttgaattg 236  Q
    || |||||| |||||| ||||||||    
T  54729534 atgcaaagtggaatatattgaattg 54729558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 132 - 233
Target Start/End: Complemental strand, 13719912 - 13719811
Alignment:
Q  132 aaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttg 231  Q
    ||||||||||||| |||||| || |||||||||| ||| | || |||| | || || || |||||| ||||||| |||||||  |||||| ||||| |||    
T  13719912 aaaaagtgtataaatgaaagagaaagaaaaatgggtttgagtgtctttgttaagtaatgatgtattattctttatcataaatgtaaagtataatatattg 13719813  T
Q  232 aa 233  Q
    ||    
T  13719812 aa 13719811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 235
Target Start/End: Complemental strand, 49306718 - 49306621
Alignment:
Q  138 tgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaatt 235  Q
    ||||||| |||||| ||||||||||||||||||| |||  || | || ||||||| |||| | |  || ||||||| |||||| |||||| |||||||    
T  49306718 tgtataaatgaaagagagagaaaaatggttttaagtgctcttgttaagtattggtctattctcccctatcataaatgcaaagtggaatatattgaatt 49306621  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #49
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 239
Target Start/End: Complemental strand, 49401798 - 49401686
Alignment:
Q  126 attaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaat 225  Q
    ||||||||||| |||||||   |||| ||||||||||| ||||| |||| | || |||| ||||| |  ||| |||||||  ||||||  ||||||||||    
T  49401798 attaagaaaaa-tgtataaagtaaagagagagaaaaatagttttgaatgtccttttcaagtattgatacattgttctttattataaatgtaaagtagaat 49401700  T
Q  226 atgttgaattggaa 239  Q
    || |||||||||||    
T  49401699 atattgaattggaa 49401686  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #50
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 28974459 - 28974404
Alignment:
Q  115 atttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||| |||||||| ||| ||||||| ||||||||||| |||| |||||||||    
T  28974459 atttcacacatattaagacaaa-tgtataaatgaaagggagataaaagtggttttaa 28974404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #51
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 106 - 151
Target Start/End: Complemental strand, 38838787 - 38838740
Alignment:
Q  106 cttttgctcatttcacacttat--taagaaaaagtgtataagtgaaag 151  Q
    |||||||||||||||||| |||  ||||||||||||| ||||||||||    
T  38838787 cttttgctcatttcacacatatattaagaaaaagtgtctaagtgaaag 38838740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #52
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 171
Target Start/End: Original strand, 52676977 - 52677040
Alignment:
Q  107 ttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||||||||||||| | ||||||||||||| ||||| |||||| |  ||||||||||| ||||||    
T  52676977 ttttgctcatttcatatttattaagaaaaa-tgtattagtgaatgaaagagaaaaatgattttaa 52677040  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 89; Significance: 1e-42; HSPs: 49)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 89; E-Value: 1e-42
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 13222259 - 13222095
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| |||||||||||| || || ||  || |||||||||||||||||||||| |||||||||||||| ||||||||||||| ||| | ||||     
T  13222259 tactccctccgtcccattttaaccgagccattgacttatttcacacttattaagaaaaaatgtataagtgaaagagagagaaaaatgggtttgagtgccc 13222160  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    |||||||||||||||||||| ||||||| ||||||| ||||||| ||||| ||||||||||||||    
T  13222159 ttatcaactattggtgtattcttctttatcataaatgcaaagtaaaatatattgaattggaagtg 13222095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 88; E-Value: 6e-42
Query Start/End: Original strand, 78 - 241
Target Start/End: Complemental strand, 314618 - 314455
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||||||||||||| |  ||  |||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| | ||||     
T  314618 tactccctccgtcccattttaactgagcgattgactcatttcacacttattaagaaaaagtgtataagtgaaagagagaggaaaatggttttgagtgccc 314519  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagt 241  Q
    ||||||||||||| || ||| ||||||| ||||||| ||||||||||||| |||||||| ||||    
T  314518 ttatcaactattgatgcattcttctttatcataaatgcaaagtagaatatattgaattgaaagt 314455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 83 - 236
Target Start/End: Original strand, 6972462 - 6972614
Alignment:
Q  83 cctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatc 182  Q
    ||||| |||||||||||||||  ||||  ||||||||||||||||||||||||| |||||||||||||| ||||| ||||||||||| | |||| |||||    
T  6972462 cctccgtcccattttaactgagtctttgactcatttcacacttattaagaaaaaatgtataagtgaaagagagag-aaaatggttttgagtgcccttatc 6972560  T
Q  183 aactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    ||||||| ||| ||| ||||||| ||||||| ||||||||||||| ||||||||    
T  6972561 aactatttgtgcattcttctttatcataaatgcaaagtagaatatattgaattg 6972614  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 4282934 - 4283093
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaa-agtgtataagtgaaagggagagaaaaatggttttaaatgcc 176  Q
    |||||||||| || ||||||||||||  ||||||||||||| ||  |||||||||||| ||||||||||| |||| ||||||||||||||||| ||||||    
T  4282934 tacttcctccgtctcattttaactgagtcttttgctcattttacgtttattaagaaaaaagtgtataagtaaaagagagagaaaaatggttttgaatgcc 4283033  T
Q  177 tttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
     ||||||| |||||||| |||  |||||| |||||||  ||| |||||||| ||||||||    
T  4283034 cttatcaagtattggtgcattcctctttatcataaatgtaaaatagaatatattgaattg 4283093  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 89 - 227
Target Start/End: Original strand, 928466 - 928603
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactat 188  Q
    ||||||||||||||| || || ||||||||||||||||||||||||||  ||||||||||||| || | |||||||| ||| | ||||||||||||||||    
T  928466 tcccattttaactgagcccttggctcatttcacacttattaagaaaaaacgtataagtgaaagaga-aaaaaaatgggtttgagtgcctttatcaactat 928564  T
Q  189 tggtgtatttttctttagcataaatacaaagtagaatat 227  Q
    ||||| ||| ||||||| ||||||| |||| ||||||||    
T  928565 tggtgcattcttctttatcataaatgcaaaatagaatat 928603  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 112 - 236
Target Start/End: Complemental strand, 2048448 - 2048325
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||||||||||||| | | |||  |||||||||||||||| ||| || |||| |||||    
T  2048448 ctcatttcacacttattaaaaaaaa-tgtataagtgaaagagagagaaaaatggttatgagtgctcttatcaactattggtgcattcttgtttatcataa 2048350  T
Q  212 atacaaagtagaatatgttgaattg 236  Q
    || ||||||||||||| ||||||||    
T  2048349 atgcaaagtagaatatattgaattg 2048325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 64; E-Value: 1e-27
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 43950399 - 43950529
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    ||||||||||||||||||| ||||| |||||||||||||| ||||||||||| ||||||||||  ||| | || ||||| |||||||| | ||| |||||    
T  43950399 ctcatttcacacttattaaaaaaaa-tgtataagtgaaagagagagaaaaatagttttaaatgtttttgttaagtattgatgtattttccattaacataa 43950497  T
Q  212 atacaaagtagaatatgttgaattggaagtga 243  Q
    || ||||||||||||| |||||||| ||||||    
T  43950498 atgcaaagtagaatatattgaattgaaagtga 43950529  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 112 - 237
Target Start/End: Complemental strand, 9725034 - 9724910
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    |||||||||||| ||||||||||| |||||||| |||||| |||||| ||||| |||| | ||| |||||||| |||||||| ||| ||||||| |||||    
T  9725034 ctcatttcacacatattaagaaaa-gtgtataaatgaaagagagagagaaatgattttgagtgcttttatcaagtattggtgcattcttctttatcataa 9724936  T
Q  212 atacaaagtagaatatgttgaattgg 237  Q
    ||  |||||||||||| |||||||||    
T  9724935 atgtaaagtagaatatattgaattgg 9724910  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 71 - 242
Target Start/End: Original strand, 37528981 - 37529151
Alignment:
Q  71 aaaaaagtacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttta 170  Q
    |||||| |||| ||||| ||||| |||||||||  | |||| |||||||||||||||||| ||||| | ||| ||| || |  ||||||||||||||||     
T  37528981 aaaaaattactccctccgtcccaatttaactgagtcatttgttcatttcacacttattaaaaaaaa-tatattagtaaaggatagagaaaaatggttttg 37529079  T
Q  171 aatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    | || |||| | || ||||||| |||||||||||| |||||||  |||||||||||  ||||||||||||||    
T  37529080 agtgtctttgttaagtattggtctatttttctttatcataaatgtaaagtagaataaattgaattggaagtg 37529151  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 55; E-Value: 3e-22
Query Start/End: Original strand, 108 - 242
Target Start/End: Complemental strand, 2427521 - 2427387
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagc 207  Q
    ||||||||||||| | ||||||||||||||||||||| ||| |   |||||||||||| ||| |||||| |||| || |||||| | ||| ||||||  |    
T  2427521 tttgctcatttcatatttattaagaaaaagtgtataactgacatatagagaaaaatgggtttgaatgcccttattaattattggagcattcttctttgtc 2427422  T
Q  208 ataaatacaaagtagaatatgttgaattggaagtg 242  Q
    |||||| ||||||||||||| ||||||||| ||||    
T  2427421 ataaatgcaaagtagaatatattgaattgggagtg 2427387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 53; E-Value: 5e-21
Query Start/End: Original strand, 107 - 242
Target Start/End: Original strand, 38872867 - 38873000
Alignment:
Q  107 ttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttag 206  Q
    |||||||||||||| |||||||||||||||||||| ||||| ||| || | |||||||||||| | || | ||||||||||||| || |||  ||||||     
T  38872867 ttttgctcatttcatacttattaagaaaaagtgtaaaagtggaagagaaaaaaaaatggttttgagtgtccttatcaactattgatgcattcctctttat 38872966  T
Q  207 cataaatacaaagtagaatatgttgaattggaagtg 242  Q
    |||||||| |||||  ||||| ||||||||| ||||    
T  38872967 cataaatataaagt--aatatattgaattgggagtg 38873000  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 89 - 236
Target Start/End: Complemental strand, 7213654 - 7213508
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactat 188  Q
    ||||| ||||| ||| || ||| ||||||||||||  ||||||||||| ||||||| |||||  |||||||||||| |||| | |||||||||||| |||    
T  7213654 tcccagtttaattgagccattttctcatttcacacagattaagaaaaa-tgtataaatgaaatagagagaaaaatgattttgagtgcctttatcaaatat 7213556  T
Q  189 tggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    ||||| ||| |||||||  ||||||  ||||| |||||| ||||||||    
T  7213555 tggtgcattcttctttattataaatgtaaagtggaatatattgaattg 7213508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 80 - 243
Target Start/End: Original strand, 43427005 - 43427167
Alignment:
Q  80 cttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgccttt 179  Q
    |||||||| ||||||||||||||| |  ||  ||||||||| |||| |||||||||||||||||| |||||  ||||||||||| | ||| | |||| ||    
T  43427005 cttcctccgtcccattttaactgagctattgactcatttcatactttttaagaaaaagtgtataaatgaaa--gagagaaaaataggtttgagtgccctt 43427102  T
Q  180 at-caactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtga 243  Q
     |  ||||||| ||| ||| ||||||| ||||||| |||| |||||||| ||||||||| |||||    
T  43427103 gtgaaactattagtgcattcttctttatcataaatgcaaaatagaatatattgaattgggagtga 43427167  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 114 - 237
Target Start/End: Complemental strand, 24356265 - 24356143
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    ||||||||||  |||||||||| ||||||||  ||||| ||||||||| | ||||| | ||||||| |||| ||||| || ||| ||||||| |||||||    
T  24356265 catttcacacagattaagaaaa-gtgtataaaggaaagagagagaaaactagttttgagtgcctttttcaagtattgatgcattcttctttatcataaat 24356167  T
Q  214 acaaagtagaatatgttgaattgg 237  Q
      ||||||||||||||||||||||    
T  24356166 gtaaagtagaatatgttgaattgg 24356143  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 96 - 158
Target Start/End: Complemental strand, 5426031 - 5425969
Alignment:
Q  96 ttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagaga 158  Q
    |||||||| ||||||| ||||||||||| ||||||||||||||||||||||||||| ||||||    
T  5426031 ttaactgatccttttgttcatttcacacgtattaagaaaaagtgtataagtgaaagagagaga 5425969  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 10069530 - 10069659
Alignment:
Q  106 cttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttcttta 205  Q
    ||||||||||||||||||| ||||||||||| | |||||||||||| |||| ||||||| |||||| | | ||| |||| |||| ||| ||||  | |||    
T  10069530 cttttgctcatttcacactcattaagaaaaa-tatataagtgaaagagagataaaaatgattttaagtacttttgtcaagtatttgtgcatttaccatta 10069628  T
Q  206 gcataaatacaaagtagaatatgttgaattg 236  Q
     ||||||| |||||| |||||| ||||||||    
T  10069629 tcataaatgcaaagtcgaatatattgaattg 10069659  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 224
Target Start/End: Original strand, 38280148 - 38280258
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    ||||||||||| |||||||||||| |||||||  ||||  ||||||||||||||||| | ||||||| | || |||||||| ||| ||||||| ||||||    
T  38280148 tcatttcacacatattaagaaaaa-tgtataaaggaaatagagagaaaaatggttttgagtgccttttttaaatattggtgcattcttctttatcataaa 38280246  T
Q  213 tacaaagtagaa 224  Q
    |  |||||||||    
T  38280247 tgtaaagtagaa 38280258  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 116 - 237
Target Start/End: Original strand, 18181168 - 18181288
Alignment:
Q  116 tttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatac 215  Q
    ||||||||  |||||||||| |||||||||||| || ||||||||||||||||||| ||| ||| | |  |||||||| ||| | |  || ||||||| |    
T  18181168 tttcacacagattaagaaaa-gtgtataagtgagagagagagaaaaatggttttaagtgcttttgttatgtattggtgcattctccactatcataaatgc 18181266  T
Q  216 aaagtagaatatgttgaattgg 237  Q
    |||||||||||| |||||||||    
T  18181267 aaagtagaatattttgaattgg 18181288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 148 - 235
Target Start/End: Complemental strand, 31348632 - 31348545
Alignment:
Q  148 aaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaatt 235  Q
    |||| ||||||||||||| ||| | |||| |||||||||||||||| ||| || |||| ||||||| || |||||||||| |||||||    
T  31348632 aaagagagagaaaaatgggtttgagtgcccttatcaactattggtgcattcttttttatcataaatgcatagtagaatatattgaatt 31348545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 75 - 237
Target Start/End: Original strand, 39166606 - 39166771
Alignment:
Q  75 aagtacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaa---gtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||||||  |||| ||||||||||| ||| | |||||||||||||||| ||||||| |||||    | |||||||||||| || ||||||||| |||| |    
T  39166606 aagtactcgctccgtcccattttaattgagctttttgctcatttcacatttattaaaaaaaatatatatataagtgaaagagaaagaaaaatgattttga 39166705  T
Q  172 atgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattgg 237  Q
    ||||| |||| || |||  ||  ||| || |||| |||||||  |||||| ||||| |||||||||    
T  39166706 atgcccttattaattatgtgtacattcttttttatcataaatgtaaagtataatatattgaattgg 39166771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 108 - 175
Target Start/End: Original strand, 45464162 - 45464228
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgc 175  Q
    |||||||||||||||| |||||||||||| |||||||||||| | |||| ||||||| ||||||||||    
T  45464162 tttgctcatttcacacatattaagaaaaa-tgtataagtgaatgagagaaaaaaatgattttaaatgc 45464228  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 140 - 242
Target Start/End: Original strand, 1908472 - 1908574
Alignment:
Q  140 tataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaa 239  Q
    ||||| |||||  ||||||||||||||||| | || ||||  ||| |||| ||| ||| ||||||| |||||||  |||||||||||| |||||||||||    
T  1908472 tataaatgaaatagagagaaaaatggttttgagtgtcttttgcaagtattagtgcattcttctttatcataaatgtaaagtagaatatattgaattggaa 1908571  T
Q  240 gtg 242  Q
    |||    
T  1908572 gtg 1908574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 18460642 - 18460521
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    ||||||||||  |||||||||| |||||||| |||||| || ||||||||| |||| | || |||| |||| |||||||  ||| ||||||  |||||||    
T  18460642 catttcacacagattaagaaaa-gtgtataaatgaaagagatagaaaaatgattttgagtgtctttgtcaaatattggtacattcttctttgtcataaat 18460544  T
Q  214 acaaagtagaatatgttgaattg 236  Q
      |||||||||||| ||||||||    
T  18460543 gtaaagtagaatatattgaattg 18460521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 36748302 - 36748181
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    |||||||||| ||||||||||| ||||||||  ||||  ||||||||||| ||||| | | ||||| |||| ||||||||  || ||||||| |||||||    
T  36748302 catttcacacatattaagaaaa-gtgtataaaagaaatagagagaaaaatagttttgagttcctttttcaagtattggtgcgttattctttatcataaat 36748204  T
Q  214 acaaagtagaatatgttgaattg 236  Q
      |||||| ||||| ||||||||    
T  36748203 ttaaagtaaaatatattgaattg 36748181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 115 - 242
Target Start/End: Complemental strand, 3200049 - 3199925
Alignment:
Q  115 atttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaata 214  Q
    |||||| | ||||||||||||  ||||||| |||||| ||||||||||||||||| | || | || | ||||||| ||| ||||   |||| |||||||     
T  3200049 atttcatatttattaagaaaagatgtataaatgaaagagagagaaaaatggttttgagtgtcattgttaactatttgtgcattt---tttatcataaatg 3199953  T
Q  215 caaagtagaatatgttgaattggaagtg 242  Q
    ||||||| ||||| ||||||||| ||||    
T  3199952 caaagtataatatattgaattgggagtg 3199925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 107 - 184
Target Start/End: Original strand, 14384057 - 14384133
Alignment:
Q  107 ttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaa 184  Q
    ||||| |||||||| || |||||||||||| | ||||| |||||| ||||||||||||||||| |||| |||||||||    
T  14384057 ttttgttcatttcatacatattaagaaaaaatatataaatgaaagagagagaaaaatggttttgaatg-ctttatcaa 14384133  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 116 - 236
Target Start/End: Complemental strand, 31592703 - 31592583
Alignment:
Q  116 tttcacacttattaagaaaaa-gtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaata 214  Q
    |||||||| |||||| ||||| ||||||||||||||| ||||||||||| ||||  | || | || |||| ||||| || ||| ||  ||| ||||||||    
T  31592703 tttcacacatattaataaaaaagtgtataagtgaaagagagagaaaaatagtttcgagtgtc-ttgtcaagtattgctgcattctttcttatcataaata 31592605  T
Q  215 caaagtagaatatgttgaattg 236  Q
    ||||||||||||| ||||||||    
T  31592604 caaagtagaatatattgaattg 31592583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #28
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 236
Target Start/End: Complemental strand, 9472594 - 9472455
Alignment:
Q  96 ttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgta 195  Q
    |||||||||||  |||  |||||||||| |||||||||||| ||||||| |||||| || |||| ||||||||  | || |||| |||| ||||| |  |    
T  9472594 ttaactgaaccagttgaccatttcacacatattaagaaaaa-tgtataaatgaaagagatagaacaatggtttagagtgtctttgtcaagtattgataca 9472496  T
Q  196 tttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    || ||||||| |||||||  | |||||||||| ||||||||    
T  9472495 ttcttctttatcataaatgtatagtagaatatattgaattg 9472455  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #29
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 32556330 - 32556270
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||| ||||||||||| ||||||||||| ||||||||||||||  |||||||||||||||||||    
T  32556330 tttgttcatttcacacatattaagaaaa-gtgtataagtgaaa--gagagaaaaatggttttaa 32556270  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #30
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 113 - 243
Target Start/End: Complemental strand, 2756829 - 2756700
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    |||||||||||||||||||||||| ||||| | ||||   |||||||||||  |||||| |||  || |||| |||| ||| ||||  | ||| ||||||    
T  2756829 tcatttcacacttattaagaaaaa-tgtattaatgaagaagagagaaaaattattttaagtgctcttgtcaagtattagtgcatttaccattatcataaa 2756731  T
Q  213 tacaaagtagaatatgttgaattggaagtga 243  Q
    |  |||||||||||| || ||||||||||||    
T  2756730 tgtaaagtagaatatattaaattggaagtga 2756700  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #31
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 89 - 171
Target Start/End: Original strand, 6213778 - 6213859
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||| ||||| |||  ||||||||||||||||||||||||||||||| || || |||||| |  ||||||||||| ||||||    
T  6213778 tcccaatttaagtgagtcttttgctcatttcacacttattaagaaaaa-tgaattagtgaatgaaagagaaaaatgattttaa 6213859  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #32
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 213
Target Start/End: Complemental strand, 14890470 - 14890373
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    ||||||||||| || ||||||||| ||||||| ||||||  ||| |||||||||||| | || ||||||||| |||| ||| ||| ||||||| ||||||    
T  14890470 tcatttcacacatactaagaaaaa-tgtataaatgaaag--agataaaaatggttttgagtgtctttatcaagtattagtgcattcttctttatcataaa 14890374  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #33
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 168
Target Start/End: Original strand, 883100 - 883159
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttt 168  Q
    |||| ||||||||||| | ||||||||| ||||||||||||||| || |||||||||||||    
T  883100 tttgttcatttcacacattttaagaaaa-gtgtataagtgaaagagaaagaaaaatggttt 883159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Original strand, 8550593 - 8550651
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||||||  ||| ||||||| |||||||||||||| ||||||||| |||||||||    
T  8550593 ctcatttcacacacatttagaaaaa-tgtataagtgaaagagagagaaaagtggttttaa 8550651  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 105 - 224
Target Start/End: Original strand, 12949908 - 12950026
Alignment:
Q  105 ccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttcttt 204  Q
    ||||||| ||||||||||  ||||| |||||| |||||||||||||| |||| ||||||  |||| | || | || |||| |||||||| |||  | |||    
T  12949908 ccttttgttcatttcacatatattacgaaaaaatgtataagtgaaagagagaaaaaaataattttgagtgtc-ttgtcaagtattggtgaattccttttt 12950006  T
Q  205 agcataaatacaaagtagaa 224  Q
    | ||||||| ||||||||||    
T  12950007 atcataaatgcaaagtagaa 12950026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 28527124 - 28527062
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||||||||||||||| |||||||||||| ||||||| |||| | || | ||||||||||||||    
T  28527124 tttgctcatttcacacatattaagaaaaa-tgtataaatgaaggagaaaaaaaaatggttttaa 28527062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 40965170 - 40965112
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||||||||||| |||||||||||| ||||||| |||| | ||||||||||| |||||||    
T  40965170 ctcatttcacacgtattaagaaaaa-tgtataaatgaaggagagagaaaaatagttttaa 40965112  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 44737026 - 44736964
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||||||||||||||| |||||||||||| ||||||||| || | |||| ||||||| ||||||    
T  44737026 tttgctcatttcacacatattaagaaaaa-tgtataagttaatgagagataaaaatgattttaa 44736964  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 113 - 227
Target Start/End: Complemental strand, 3123801 - 3123688
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    ||||||||||| |||||||||||| ||||||| ||||   |||||||||||  |||||| ||| || || || |||||||| ||| |||  || ||||||    
T  3123801 tcatttcacacatattaagaaaaa-tgtataactgaagtagagagaaaaataattttaagtgctttcattaagtattggtgcattcttcactatcataaa 3123703  T
Q  213 tacaaagtagaatat 227  Q
    |||||| | ||||||    
T  3123702 tacaaaatggaatat 3123688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #40
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 161
Target Start/End: Original strand, 5007194 - 5007240
Alignment:
Q  115 atttcacacttattaagaaaaagtgtataagtgaaagggagagaaaa 161  Q
    ||||||||| ||||||||||| |||||||||| |||| |||||||||    
T  5007194 atttcacacatattaagaaaatgtgtataagtaaaagagagagaaaa 5007240  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #41
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 113 - 199
Target Start/End: Original strand, 43077678 - 43077763
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttt 199  Q
    ||||||||||| |||||||| ||| ||||||| |||| | ||||||||||| ||||||||||   || | ||||||||||| |||||    
T  43077678 tcatttcacacgtattaagacaaa-tgtataaatgaatgagagagaaaaatagttttaaatgtacttgttaactattggtgcatttt 43077763  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #42
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 101 - 151
Target Start/End: Complemental strand, 44024875 - 44024825
Alignment:
Q  101 tgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaag 151  Q
    ||||||||||| ||| ||||||| |||||||||||| | ||||||||||||    
T  44024875 tgaaccttttgttcacttcacacgtattaagaaaaaatctataagtgaaag 44024825  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #43
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 138 - 236
Target Start/End: Original strand, 44424241 - 44424337
Alignment:
Q  138 tgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    |||||||||||||| ||||| ||||||||||| |||| | || |||| ||||| || ||||||  ||| ||||||| |||||| |||||| ||||||||    
T  44424241 tgtataagtgaaagagagag-aaaatggttttgaatgtc-ttgtcaagtattgatgcattttttattatcataaatgcaaagttgaatatattgaattg 44424337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #44
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 171
Target Start/End: Original strand, 435026 - 435087
Alignment:
Q  111 gctcatttcacacttattaagaaaaa-gtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||||||| ||||||||||||  ||||||| |||||| |||| |||||| |||||||    
T  435026 gctcatttcacacgtattaagaaaaatatgtataaatgaaagagagacaaaaatagttttaa 435087  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #45
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 78 - 174
Target Start/End: Original strand, 10394202 - 10394295
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatg 174  Q
    |||||||||| |||||  ||||||||||  |||| |||||||||||  ||||||||||| |||||||  ||| | |||||||||||  |||||||||    
T  10394202 tacttcctccatcccaaattaactgaactatttgttcatttcacac--attaagaaaaa-tgtataaaagaaggagagagaaaaataattttaaatg 10394295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #46
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 14306031 - 14306072
Alignment:
Q  95 tttaactgaaccttttgctcatttcacacttattaagaaaaa 136  Q
    ||||| ||||| |||||||||||||||| |||||||||||||    
T  14306031 tttaagtgaacattttgctcatttcacatttattaagaaaaa 14306072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #47
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 171
Target Start/End: Complemental strand, 39159780 - 39159717
Alignment:
Q  106 cttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||||||||||||||||| ||||||| ||||  ||||| || |||||||||||| ||||||    
T  39159780 cttttgctcatttcacacttatt-agaaaaa-tgtaatagtgatagagagagaaaaatgattttaa 39159717  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #48
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 106 - 171
Target Start/End: Original strand, 39209414 - 39209477
Alignment:
Q  106 cttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||||||||||||||||| ||||||| ||||  ||||| || |||||||||||| ||||||    
T  39209414 cttttgctcatttcacacttatt-agaaaaa-tgtaatagtgatagagagagaaaaatgattttaa 39209477  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #49
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 126 - 214
Target Start/End: Complemental strand, 39807355 - 39807268
Alignment:
Q  126 attaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaata 214  Q
    ||||||||||| ||||||| | |||| || |||||||||||||| | ||||||| | || |||||||| ||| |||||||  |||||||    
T  39807355 attaagaaaaa-tgtataaatcaaagagaaagaaaaatggttttgagtgcctttgtgaagtattggtgcattcttctttataataaata 39807268  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 82; Significance: 2e-38; HSPs: 22)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 89 - 242
Target Start/End: Original strand, 15371791 - 15371943
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactat 188  Q
    ||||||||||||||| || || | |||||||||| |||||||||||||||||||||||||||| ||||||||||||||||| | || | |||||||||||    
T  15371791 tcccattttaactgagcccttggttcatttcacaattattaagaaaaagtgtataagtgaaagcgagagaaaaatggttttgagtgtc-ttatcaactat 15371889  T
Q  189 tggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    | ||| ||| ||||||| ||||||| ||||||||||||| ||||||||| ||||    
T  15371890 tagtgcattcttctttatcataaatgcaaagtagaatatattgaattgggagtg 15371943  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 15325337 - 15325180
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||||||||||||| |  ||  ||||||||||| |||||||||||||||||||||||||||| ||||||||| ||||||| ||||||     
T  15325337 tactccctccgtcccattttaactgagctcttgactcatttcacaattattaagaaaaagtgtataagtgaaagagagagaaaattggttttgaatgcc- 15325239  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    ||||||||||||||||| || ||||||| | ||||| ||||||||||||| ||| ||||    
T  15325238 ttatcaactattggtgtgttcttctttatcgtaaatgcaaagtagaatatattggattg 15325180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 5e-30
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 15321153 - 15321299
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactat 188  Q
    ||||||||||||||| || || ||| |||||||| ||||||||||||||||||||| |||||| ||||||||| ||||||| | || | |||| ||||||    
T  15321153 tcccattttaactgatcccttggcttatttcacaattattaagaaaaagtgtataactgaaagagagagaaaattggttttcagtgtc-ttataaactat 15321251  T
Q  189 tggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    |||||  || ||||||| ||||||| ||||||||||||| ||||||||    
T  15321252 tggtgcgttcttctttatcataaatgcaaagtagaatatattgaattg 15321299  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 15355752 - 15355608
Alignment:
Q  91 ccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattg 190  Q
    ||||||||||||| |  || | |||||| ||| |||||||||||||||||||||||||||  ||||||||| ||||||| | || | |||||||||||||    
T  15355752 ccattttaactgagctcttggttcattttacaattattaagaaaaagtgtataagtgaaaaagagagaaaattggttttgagtgtc-ttatcaactattg 15355654  T
Q  191 gtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    ||| ||| ||||||| ||||||| |||||||||||||  |||||||    
T  15355653 gtgcattcttctttatcataaatccaaagtagaatataatgaattg 15355608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 34803621 - 34803781
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||||||||| ||| || || ||||||||||||||||||||||||||||||||||  ||||| ||||| ||||||||||| | || ||    
T  34803621 tactccctccgtcccattttaattgagcccttagctcatttcacacttattaagaaaaagtgtataaaggaaagagagaggaaaatggttttgagtgtct 34803720  T
Q  178 ttatcaactattggtgtatttttctt--tagcataaatacaaagtagaatatgttgaattg 236  Q
    ||||||||||||| || |||  ||||  || ||||||| |||| || ||||| ||||||||    
T  34803721 ttatcaactattgatgcattcctctttatatcataaatgcaaaataaaatatattgaattg 34803781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 78 - 237
Target Start/End: Original strand, 33921386 - 33921544
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||||||||||||| || |||||||||||| |||||||||||||||| | ||| |||||| | ||||||||||||||||| | ||  |    
T  33921386 tactccctccgtcccattttaactgagccatttgctcatttcgcacttattaagaaaaa-tatattagtgaaggagagagaaaaatggttttgagtgtgt 33921484  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattgg 237  Q
    || | || |||||||  ||| ||||||| |||||||  |||||||||||| |||||||||    
T  33921485 ttgttaagtattggtccattcttctttatcataaatgtaaagtagaatatattgaattgg 33921544  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 56; E-Value: 7e-23
Query Start/End: Original strand, 89 - 236
Target Start/End: Original strand, 15351311 - 15351457
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactat 188  Q
    ||||||||||| |||| | ||  ||||||||||| ||||||||||||| |||||||||||| | ||||||||| || |||| | |||| |||||||||||    
T  15351311 tcccattttaattgaatccttgactcatttcacaattattaagaaaaaatgtataagtgaatgagagagaaaattgatttttagtgcc-ttatcaactat 15351409  T
Q  189 tggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    || ||  || ||||||| ||||||| ||| ||||||||| ||||||||    
T  15351410 tgatgcgttcttctttatcataaatgcaaggtagaatatattgaattg 15351457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 132 - 234
Target Start/End: Original strand, 3166078 - 3166180
Alignment:
Q  132 aaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttg 231  Q
    ||||||||||||| |||||| ||||||||||| ||||| | || ||||| ||| ||||| |||||||||||||| |||||||  |||||||||||| |||    
T  3166078 aaaaagtgtataaatgaaagagagagaaaaatagttttgagtgtctttaacaagtattgatgtatttttctttatcataaatgtaaagtagaatatattg 3166177  T
Q  232 aat 234  Q
    |||    
T  3166178 aat 3166180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 49; E-Value: 1e-18
Query Start/End: Original strand, 91 - 243
Target Start/End: Original strand, 31075854 - 31076005
Alignment:
Q  91 ccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattg 190  Q
    ||||||||| ||| | ||||| ||||||||| |  ||||||||||| |||| ||||||||| |||||||||||||| || | || |||| ||||||||||    
T  31075854 ccattttaagtgatcattttgttcatttcacccacattaagaaaaaatgtacaagtgaaagagagagaaaaatggtattgagtgtcttt-tcaactattg 31075952  T
Q  191 gtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtga 243  Q
    ||| |||  |  ||| |||||||||||| || ||||| ||||||||| |||||    
T  31075953 gtgcattccttcttatcataaatacaaaatataatatattgaattgggagtga 31076005  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 132 - 235
Target Start/End: Original strand, 3874020 - 3874123
Alignment:
Q  132 aaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttg 231  Q
    ||||||||||||| |||||| |||| ||||||| |||| | || |||| |||| |||||||| ||| ||||||| |||||||  ||||| |||||| |||    
T  3874020 aaaaagtgtataaatgaaagagagaaaaaaatgattttgagtgtctttgtcaagtattggtgcattattctttatcataaatgtaaagttgaatatattg 3874119  T
Q  232 aatt 235  Q
    ||||    
T  3874120 aatt 3874123  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 111 - 242
Target Start/End: Complemental strand, 4553059 - 4552936
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagt-gaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcat 209  Q
    |||||||||||||||||||||||||  |||||||||  |||| ||||||||||||||||| | |         ||||||||||| ||| ||||||| |||    
T  4553059 gctcatttcacacttattaagaaaatatgtataagtaaaaagagagagaaaaatggttttgagt---------aactattggtgcattcttctttatcat 4552969  T
Q  210 aaatacaaagtagaatatgttgaattggaagtg 242  Q
    |||| |||| |||||||| || |||||| ||||    
T  4552968 aaatgcaaattagaatatattaaattgggagtg 4552936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 78 - 162
Target Start/End: Complemental strand, 16126402 - 16126318
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaa 162  Q
    |||| ||||| || ||||||||||||   ||||| ||||||||||| ||||||||||||||||| ||| ||||| |||| |||||    
T  16126402 tactccctccgtctcattttaactgactattttgttcatttcacacgtattaagaaaaagtgtaaaagcgaaagagagaaaaaaa 16126318  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 113 - 241
Target Start/End: Original strand, 3604552 - 3604679
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    ||||||||||| |||||||| ||| ||||||| | |||| ||||||||||||||||||| | |  || | || |||||||| ||| | | |||   ||||    
T  3604552 tcatttcacacatattaagacaaa-tgtataaataaaagagagagaaaaatggttttaagttctcttgttaagtattggtgcattctccattattgtaaa 3604650  T
Q  213 tacaaagtagaatatgttgaattggaagt 241  Q
    | |||||| |||||| |||||||||||||    
T  3604651 tgcaaagtggaatatattgaattggaagt 3604679  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 15081580 - 15081521
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||||||| |||||||||||| ||||||| |||| | ||||||||||| |||||||    
T  15081580 gctcatttcacacgtattaagaaaaa-tgtataaatgaaggtgagagaaaaatagttttaa 15081521  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 111 - 175
Target Start/End: Complemental strand, 33109530 - 33109467
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgc 175  Q
    ||||||||||||| |||||||||||| ||||||  |||| | ||||||||||| |||||||||||    
T  33109530 gctcatttcacacgtattaagaaaaa-tgtatagatgaatgagagagaaaaatagttttaaatgc 33109467  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 127 - 214
Target Start/End: Complemental strand, 20027724 - 20027637
Alignment:
Q  127 ttaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaata 214  Q
    |||||||||||||||||||||||||  | || |||||| |||| | || |||| | || |||||||| ||| ||||||| ||||||||    
T  20027724 ttaagaaaaagtgtataagtgaaagaaatagcaaaatgattttgagtgtctttgttaagtattggtgcattcttctttatcataaata 20027637  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 108 - 174
Target Start/End: Original strand, 7739465 - 7739530
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatg 174  Q
    |||||||||||||||  || ||||||||| |||||||||||||| || |||||||| |||| |||||    
T  7739465 tttgctcatttcacatgtaataagaaaaa-tgtataagtgaaagagatagaaaaatagtttaaaatg 7739530  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 83 - 169
Target Start/End: Complemental strand, 20384030 - 20383944
Alignment:
Q  83 cctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttt 169  Q
    ||||| ||||||| | | ||||| ||||| || ||| |||| ||||||||||| || | |||||||||| |||| ||||||||||||    
T  20384030 cctccatcccattattagtgaactttttgttcctttaacacatattaagaaaaggtatgtaagtgaaagagagaaaaaaatggtttt 20383944  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 241
Target Start/End: Complemental strand, 31265932 - 31265807
Alignment:
Q  115 atttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaata 214  Q
    ||||||||| |||||||| ||| ||||||| |||| | ||||||||||| ||||||| |||  || | || |||||||| ||| | |  || |||||||     
T  31265932 atttcacacatattaagacaaa-tgtataaatgaaggagagagaaaaatagttttaagtgctcttgttaagtattggtgcattctccactatcataaatg 31265834  T
Q  215 caaagtagaatatgttgaattggaagt 241  Q
     ||||| |||||| |||||||||||||    
T  31265833 taaagtggaatatattgaattggaagt 31265807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 176 - 242
Target Start/End: Original strand, 33017958 - 33018024
Alignment:
Q  176 ctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    |||| |||| |||||||| ||| ||||||| |||||||  |||||||||||| ||||||||| ||||    
T  33017958 ctttgtcaagtattggtgcattcttctttatcataaatgtaaagtagaatatattgaattgggagtg 33018024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 95 - 227
Target Start/End: Original strand, 9354374 - 9354505
Alignment:
Q  95 tttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgt 194  Q
    |||||||||  | |||||| |||| ||| || |||||||||| | ||| |||||| | ||||||||||||||||| | || |||| | || |||||||      
T  9354374 tttaactgagtcatttgcttattttacattttttaagaaaaa-tatattagtgaatgagagagaaaaatggttttgagtgtctttgttaaatattggtcc 9354472  T
Q  195 atttttctttagcataaatacaaagtagaatat 227  Q
    ||| ||||||| |||||||  | ||||||||||    
T  9354473 attcttctttatcataaatgtagagtagaatat 9354505  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 227
Target Start/End: Complemental strand, 34703792 - 34703643
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaa--tgc 175  Q
    |||| ||||| ||||| ||||| ||| | ||||| ||||||||||| |||||||||||| |||||  ||||| | || ||| |||||||||||||  | |    
T  34703792 tactccctccgtcccaatttaagtgagcattttgttcatttcacac-tattaagaaaaa-tgtattggtgaaggagatagagaaatggttttaaattttc 34703695  T
Q  176 ctttatcaactattggtgtatttttctttagcataaatacaaagtagaatat 227  Q
     ||| |||| |||||||| ||||  | ||| || |||| |||||||||||||    
T  34703694 ttttgtcaattattggtgcatttaccattatcacaaatgcaaagtagaatat 34703643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 81; Significance: 9e-38; HSPs: 45)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 81; E-Value: 9e-38
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 32776174 - 32776010
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| | ||||| ||| ||| ||||||||||||||||||| ||||||||||||||||||||||||| | ||||||||||||||||| | |||||    
T  32776174 tactccctccgttccattataaatgagccttttgctcatttcacacatattaagaaaaagtgtataagtgaaggagagagaaaaatggttttgagtgcct 32776075  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    || | || |||||||| ||| ||||||| |||||||  |||||||||||| ||||||||| ||||    
T  32776074 ttgttaagtattggtgcattcttctttatcataaatgtaaagtagaatatattgaattgggagtg 32776010  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 80; E-Value: 3e-37
Query Start/End: Original strand, 78 - 237
Target Start/End: Original strand, 29996945 - 29997104
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||||||||| ||| ||||||||||| |||||  |||||||||||||||||||||||||||||||||||||||| || |||||||||||||| |||| |     
T  29996945 tacttcctccgtcctattttaactgagcctttgactcatttcacacttattaagaaaaagtgtataagtgaaagagaaagaaaaatggttttgaatgtcc 29997044  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattgg 237  Q
    || | || |||||||| ||| ||||||| ||||||| ||||||| ||||| |||| ||||    
T  29997045 ttgttaattattggtgcattcttctttatcataaatgcaaagtataatatattgagttgg 29997104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 79; E-Value: 1e-36
Query Start/End: Original strand, 82 - 232
Target Start/End: Complemental strand, 47238404 - 47238254
Alignment:
Q  82 tcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttat 181  Q
    |||||| | |||||||||| ||  | || ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| | |||| ||||    
T  47238404 tcctccgttccattttaaccgagtcattggctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaatggttttgagtgcccttat 47238305  T
Q  182 caactattggtgtatttttctttagcataaatacaaagtagaatatgttga 232  Q
    |||| ||||||| ||| ||||||| ||||||| ||||||| || |||||||    
T  47238304 caacaattggtgcattcttctttatcataaatgcaaagtacaaaatgttga 47238254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 78 - 242
Target Start/End: Complemental strand, 37264502 - 37264340
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||||||||| ||| ||||||||||||||||||| |||||||||||||| |||||||||||  ||||||||||||||||| | ||||     
T  37264502 tactccctccgtcccattttaagtgagccttttgctcatttcacacatattaagaaaaagtatataagtgaaa--gagagaaaaatggttttgagtgccc 37264405  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    || |||| ||||| || |||  |||||| ||||||| ||||||||||||| ||||||||| ||||    
T  37264404 ttgtcaagtattgatgcattgctctttatcataaatgcaaagtagaatatattgaattgggagtg 37264340  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 112 - 236
Target Start/End: Original strand, 32971968 - 32972092
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    ||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||| |||||||||||||||| ||| || |||  |||||    
T  32971968 ctcatttcacacttattaagaaaaaatgtataagtgaaagagagagaaaaatggttttgagtgcccttatcaactattggtgcattcttttttgtcataa 32972067  T
Q  212 atacaaagtagaatatgttgaattg 236  Q
    || ||||||||||||| ||||||||    
T  32972068 atgcaaagtagaatatattgaattg 32972092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 65; E-Value: 3e-28
Query Start/End: Original strand, 112 - 232
Target Start/End: Original strand, 23111039 - 23111159
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    ||||||||| ||||||||||||||| ||||||| |||||  |||||||||||| |||| |||| |||||||||||||||||| ||| ||||||| |||||    
T  23111039 ctcatttcatacttattaagaaaaaatgtataaatgaaatagagagaaaaatgattttgaatgtctttatcaactattggtgcattcttctttatcataa 23111138  T
Q  212 atacaaagtagaatatgttga 232  Q
    ||  |||||||||||| ||||    
T  23111139 atgtaaagtagaatatattga 23111159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 128 - 236
Target Start/End: Original strand, 10355701 - 10355809
Alignment:
Q  128 taagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatat 227  Q
    |||||||||||||||||||| ||| |||| |||||||||||| | || | |||||||||||||||| |||| |||||| ||||||| |||||||||||||    
T  10355701 taagaaaaagtgtataagtgtaagagagaaaaaaatggttttgagtgtccttatcaactattggtgcatttctctttatcataaatgcaaagtagaatat 10355800  T
Q  228 gttgaattg 236  Q
     ||||||||    
T  10355801 attgaattg 10355809  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 146 - 242
Target Start/End: Complemental strand, 38589857 - 38589761
Alignment:
Q  146 tgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    |||||| ||||||||||||||||| |||||| |||||||||||||||| ||| ||||||| |||||||  |||||||||||| ||||||||| ||||    
T  38589857 tgaaagagagagaaaaatggttttgaatgcccttatcaactattggtgcattcttctttatcataaatgtaaagtagaatatattgaattgggagtg 38589761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 92 - 227
Target Start/End: Complemental strand, 8150135 - 8150001
Alignment:
Q  92 cattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattgg 191  Q
    |||| ||| |||| ||| || ||||||||||| |||||||||||| |||||||||||||| ||||||||||||||||||| ||  ||| |||| |||| |    
T  8150135 cattataaatgaatcttgtgttcatttcacacatattaagaaaaaatgtataagtgaaagagagagaaaaatggttttaagtg-ttttgtcaaatatttg 8150037  T
Q  192 tgtatttttctttagcataaatacaaagtagaatat 227  Q
    || ||||| | ||| ||||||  |||||||||||||    
T  8150036 tgcattttccattatcataaaatcaaagtagaatat 8150001  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 114 - 237
Target Start/End: Original strand, 45218111 - 45218233
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    ||||||||||  |||||||||| ||||||||  ||||| ||||||||||| ||||| | ||||||| |||| |||||||| ||| ||||||| |||||||    
T  45218111 catttcacacaaattaagaaaa-gtgtataaaggaaagagagagaaaaatagttttgagtgcctttttcaagtattggtgcattcttctttatcataaat 45218209  T
Q  214 acaaagtagaatatgttgaattgg 237  Q
      |||||||||||| |||||||||    
T  45218210 gtaaagtagaatatattgaattgg 45218233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 114 - 236
Target Start/End: Complemental strand, 2849409 - 2849288
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    |||||||||| |||||||||||| ||||||| |||||| ||||||||||| |||||   || |||| |||| |||||||| ||| ||||||| |||||||    
T  2849409 catttcacacatattaagaaaaa-tgtataaatgaaagagagagaaaaatagttttgcgtgtctttgtcaagtattggtgcattcttctttatcataaat 2849311  T
Q  214 acaaagtagaatatgttgaattg 236  Q
      |||||||||||| ||||||||    
T  2849310 gtaaagtagaatatattgaattg 2849288  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 51; E-Value: 7e-20
Query Start/End: Original strand, 83 - 169
Target Start/End: Original strand, 33773965 - 33774051
Alignment:
Q  83 cctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttt 169  Q
    ||||| ||||||||||||||||| |||   ||||||||||  ||||||||||||||||||||||||||| ||||||||||| |||||    
T  33773965 cctccgtcccattttaactgaacttttaattcatttcacatatattaagaaaaagtgtataagtgaaagagagagaaaaatagtttt 33774051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 107 - 236
Target Start/End: Complemental strand, 43008057 - 43007927
Alignment:
Q  107 ttttgctcatttcacacttattaagaaaaagt-gtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttcttta 205  Q
    ||||||||||||||||| | ||||||||||   ||||||||||||| ||| ||||||| ||||| | || |||| |||| |||| ||| |||||||||||    
T  43008057 ttttgctcatttcacacatgttaagaaaaaaacgtataagtgaaagagagggaaaaatagttttgagtgtctttgtcaagtatttgtgcatttttcttta 43007958  T
Q  206 gcataaatacaaagtagaatatgttgaattg 236  Q
     |||||||  ||| |||||||| ||||||||    
T  43007957 tcataaatttaaattagaatatattgaattg 43007927  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 114 - 242
Target Start/End: Original strand, 30659433 - 30659560
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    ||||||||||  |||||||||| ||||| ||  ||||| ||||||||||| ||||| | ||||||| |||| |||| |||  || ||||||| |||||||    
T  30659433 catttcacacagattaagaaaa-gtgtacaaaggaaagagagagaaaaatagttttgagtgcctttgtcaaatatttgtgcgttcttctttatcataaat 30659531  T
Q  214 acaaagtagaatatgttgaattggaagtg 242  Q
    | |||||||||||| ||||||| ||||||    
T  30659532 ataaagtagaatatattgaatttgaagtg 30659560  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 9603017 - 9602894
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    |||||||||||||||||| |||||||| ||||||| ||| |||| |||||| | ||| |||||  || | |||||||| || ||| || |||| ||||||    
T  9603017 tcatttcacacttattaaaaaaaagtgcataagtggaagagagaaaaaaataggtttgaatgcgcttgttaactattgatgcattcttttttatcataaa 9602918  T
Q  213 tacaaagtagaatatgttgaattg 236  Q
    | |||||||||| || ||||||||    
T  9602917 tgcaaagtagaacatattgaattg 9602894  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 44; E-Value: 0.000000000000001
Query Start/End: Original strand, 113 - 236
Target Start/End: Complemental strand, 9830588 - 9830465
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    |||||||||||||||||| |||||||| ||||||| ||| |||| |||||| | ||| |||||  || | |||||||| || ||| || |||| ||||||    
T  9830588 tcatttcacacttattaaaaaaaagtgcataagtggaagagagaaaaaaataggtttgaatgcgcttgttaactattgatgcattcttttttatcataaa 9830489  T
Q  213 tacaaagtagaatatgttgaattg 236  Q
    | |||||||||| || ||||||||    
T  9830488 tgcaaagtagaacatattgaattg 9830465  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 43; E-Value: 0.000000000000004
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 34064405 - 34064248
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| |||||||||| ||||| |||| ||||||  || |||||||| |||||| ||||||||||||| |||||  ||||||||||| ||||| | || |     
T  34064405 tactccctccctcccgttttatctgagcctttttttcttttcacacatattaaaaaaaagtgtataaatgaaatagagagaaaaatagttttgagtgtc- 34064307  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    || | || |||||||| ||| ||  ||| |||||||  |||||||||||| ||||||||    
T  34064306 ttgttaagtattggtgcattctttcttatcataaatgtaaagtagaatatattgaattg 34064248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #18
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 107 - 220
Target Start/End: Complemental strand, 6697242 - 6697130
Alignment:
Q  107 ttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttag 206  Q
    ||||| |||||||||||||||||||||||| ||||||||||||||  ||||||||||  |||||| ||  ||| ||   |||||||| ||||||| |||     
T  6697242 ttttgttcatttcacacttattaagaaaaaatgtataagtgaaagaaagagaaaaataattttaagtg-ttttgtcgtgtattggtgcatttttcattat 6697144  T
Q  207 cataaatacaaagt 220  Q
    ||||||| ||||||    
T  6697143 cataaatgcaaagt 6697130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #19
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 111 - 227
Target Start/End: Complemental strand, 21446594 - 21446478
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcata 210  Q
    |||||||| | ||||||||||||||| |||||||||||||| |||||||||||  |||| | || | |||| || |||| ||| ||| || |||| ||||    
T  21446594 gctcattttatacttattaagaaaaattgtataagtgaaagagagagaaaaataattttgagtgtccttattaattattagtgcattcttttttatcata 21446495  T
Q  211 aatacaaagtagaatat 227  Q
    |||| |||||| |||||    
T  21446494 aatataaagtataatat 21446478  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #20
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 89 - 168
Target Start/End: Original strand, 39143601 - 39143680
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttt 168  Q
    ||||||| ||| |||  |||||||||||||||||| ||| ||||||||||||||| ||||||  ||||||| ||||||||    
T  39143601 tcccattataagtgagtcttttgctcatttcacacgtataaagaaaaagtgtatatgtgaaatagagagaataatggttt 39143680  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #21
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 71 - 193
Target Start/End: Complemental strand, 27622035 - 27621913
Alignment:
Q  71 aaaaaagtacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttta 170  Q
    |||||| |||| ||||| ||||||||||| ||| |  ||  ||||||||||||||||||||||||| |||||||   |||| || ||||||||| ||||     
T  27622035 aaaaaactactccctccgtcccattttaattgagctcttaactcatttcacacttattaagaaaaaatgtataatgaaaagagaaagaaaaatgattttg 27621936  T
Q  171 aatgcctttatcaactattggtg 193  Q
    | | || ||||||| ||||||||    
T  27621935 agtacccttatcaattattggtg 27621913  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #22
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 126 - 236
Target Start/End: Complemental strand, 36070247 - 36070138
Alignment:
Q  126 attaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaat 225  Q
    ||||||||||| ||||||| |||||| ||||| ||||||||||| | || |||| |||| |||||||| ||| ||||||| ||||||   ||||||||||    
T  36070247 attaagaaaaa-tgtataaatgaaagagagaggaaaatggttttgagtgtctttgtcaaatattggtgcattattctttatcataaacgtaaagtagaat 36070149  T
Q  226 atgttgaattg 236  Q
    ||  |||||||    
T  36070148 atactgaattg 36070138  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #23
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 113 - 169
Target Start/End: Complemental strand, 9658993 - 9658937
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggtttt 169  Q
    ||||||||||| |||||||||||| |||| ||| ||||| |||||||||||||||||    
T  9658993 tcatttcacacatattaagaaaaaatgtacaagcgaaagagagagaaaaatggtttt 9658937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #24
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 11616733 - 11616660
Alignment:
Q  96 ttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||||||| || |||||||||||||||| |||||| ||||  ||||||| |||| | |||||||||||||||||||    
T  11616733 ttaactgagccatttgctcatttcacacatattaaaaaaa--tgtataaatgaaggagagagaaaaatggttttaa 11616660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #25
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 158 - 242
Target Start/End: Complemental strand, 18731550 - 18731466
Alignment:
Q  158 aaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    |||||| ||||| | || ||||||||| ||||| || ||| ||||||| |||||||  |||||||||||| ||||||||||||||    
T  18731550 aaaaatcgttttgagtgtctttatcaagtattgatgaattcttctttatcataaatgtaaagtagaatatattgaattggaagtg 18731466  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #26
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 45890805 - 45890888
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggt 192  Q
    |||| ||||||||||| |||||||||||| |||||||  ||| | ||||||||||||||||||||||| ||| | || |||||||    
T  45890805 tttgttcatttcacacgtattaagaaaaa-tgtataaaagaaggagagagaaaaatggttttaaatgcttttgttaagtattggt 45890888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #27
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 133 - 235
Target Start/End: Original strand, 39343644 - 39343744
Alignment:
Q  133 aaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttga 232  Q
    |||||||||||| ||||||  |||||| ||| ||||| | ||| ||| |||| |||| ||||||| ||||||| |||||||  |||||||||||| ||||    
T  39343644 aaaagtgtataaatgaaag--agagaacaatcgttttgagtgcatttgtcaagtatttgtgtattcttctttatcataaatgtaaagtagaatatattga 39343741  T
Q  233 att 235  Q
    |||    
T  39343742 att 39343744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #28
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 178
Target Start/End: Original strand, 5724660 - 5724724
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctt 178  Q
    ||||||||||| |||||||||||| ||||||| |||| | ||||||||||| ||||||| ||||||    
T  5724660 tcatttcacacgtattaagaaaaa-tgtataaatgaaggagagagaaaaatagttttaagtgcctt 5724724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #29
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 241
Target Start/End: Original strand, 7425829 - 7425957
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatg-cctttatcaactattggtgtatttttctttagcataa 211  Q
    ||||||||||| |||||||| ||| ||||||| |||| | ||||||||||||||||||| ||  |||  | || |||||||| ||| | |  || |||||    
T  7425829 tcatttcacacgtattaagacaaa-tgtataaatgaatgagagagaaaaatggttttaagtgttcttgtttaagtattggtgcattctccactatcataa 7425927  T
Q  212 atacaaagtagaatatgttgaattggaagt 241  Q
    || |||||| |||||| |||||||||||||    
T  7425928 atgcaaagtggaatatattgaattggaagt 7425957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 106 - 190
Target Start/End: Original strand, 36194599 - 36194684
Alignment:
Q  106 cttttgctcatttcacacttattaagaaa-aagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattg 190  Q
    ||||| ||||||||||| || |||||||| || ||||||| |||  | || |||||||||||||||||||||||||| || |||||    
T  36194599 cttttactcatttcacatttgttaagaaagaaatgtataaatgagcgagaaagaaaaatggttttaaatgcctttattaattattg 36194684  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 116 - 236
Target Start/End: Original strand, 3667832 - 3667951
Alignment:
Q  116 tttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatac 215  Q
    |||||||| |||||||||| |||||||||||||||   ||||||||||  |||| | || | ||||||| |||| ||| ||| ||  ||| |||||||      
T  3667832 tttcacacatattaagaaatagtgtataagtgaaaaaaagagaaaaataattttgagtgtc-ttatcaagtattagtgcattatttcttatcataaatgt 3667930  T
Q  216 aaagtagaatatgttgaattg 236  Q
    |||||||||||| ||||||||    
T  3667931 aaagtagaatatattgaattg 3667951  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 107 - 236
Target Start/End: Original strand, 14648862 - 14648993
Alignment:
Q  107 ttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaat-gcct-ttatcaactattggtgtatttttcttt 204  Q
    ||||||||||||| ||| |||   |||||| ||||||||||||||  ||||||||||| |||||| | |  | || |||| |||||||| |||| || ||    
T  14648862 ttttgctcatttcgcacatatattgaaaaaatgtataagtgaaagaaagagaaaaatgattttaattagtgtcttgtcaattattggtgcatttctcatt 14648961  T
Q  205 agcataaatacaaagtagaatatgttgaattg 236  Q
    | ||||||| ||| ||||||||| ||||||||    
T  14648962 atcataaatgcaaggtagaatatattgaattg 14648993  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 153 - 236
Target Start/End: Complemental strand, 24288539 - 24288456
Alignment:
Q  153 gagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    |||||| |||| ||||| | ||||||| |||| |||| ||| ||| ||||||| |||||||  |||||||||||| ||||||||    
T  24288539 gagagataaatagttttgagtgcctttttcaagtatttgtgcattcttctttatcataaatgtaaagtagaatatattgaattg 24288456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 243
Target Start/End: Complemental strand, 29257707 - 29257573
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagc 207  Q
    ||||||||  |||||| |||||||| ||| ||||||| ||||   |||| |||||||||||||| |||  || | || ||||||| |||||| |  || |    
T  29257707 tttgctcaaatcacacatattaagacaaa-tgtataaatgaagcagagaaaaaaatggttttaagtgctcttgttaattattggtctattttccactatc 29257609  T
Q  208 ataaatacaaagtagaatatgttgaattggaagtga 243  Q
    |||||| |||||| |||||| ||||||||| |||||    
T  29257608 ataaatgcaaagtggaatatattgaattgggagtga 29257573  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 113 - 236
Target Start/End: Original strand, 37490570 - 37490692
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    ||||||||||| | |||||||||| ||||||| |||| | |||||||||||| |||||| ||  ||| | || |||||||| ||| | |  || ||||||    
T  37490570 tcatttcacacatgttaagaaaaa-tgtataaatgaaggagagagaaaaatgattttaagtgttttttttaagtattggtgcattctccactatcataaa 37490668  T
Q  213 tacaaagtagaatatgttgaattg 236  Q
    | |||||| |||||| ||||||||    
T  37490669 tgcaaagtggaatatattgaattg 37490692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 106 - 174
Target Start/End: Complemental strand, 39498838 - 39498768
Alignment:
Q  106 cttttgctcatttcacacttattaagaaaa--agtgtataagtgaaagggagagaaaaatggttttaaatg 174  Q
    ||||||||||||||||||||||||| ||||  |  |||| |||||| | ||||||||||| ||||||||||    
T  39498838 cttttgctcatttcacacttattaaaaaaaatatagtattagtgaatgagagagaaaaatagttttaaatg 39498768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 96 - 171
Target Start/End: Original strand, 44604413 - 44604487
Alignment:
Q  96 ttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||||| ||||||||  |||||| |||||||| ||| ||||||| |||| | |||||||||||| ||||||    
T  44604413 ttaactgaaccatttgctcaaatcacacatattaagacaaa-tgtataaatgaaggagagagaaaaatgattttaa 44604487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #38
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 120 - 158
Target Start/End: Original strand, 37496354 - 37496392
Alignment:
Q  120 acacttattaagaaaaagtgtataagtgaaagggagaga 158  Q
    |||| ||||||||||||||||||||||||||| ||||||    
T  37496354 acacatattaagaaaaagtgtataagtgaaagagagaga 37496392  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #39
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 114 - 171
Target Start/End: Complemental strand, 23058972 - 23058916
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||||||||| |||||||||||| | ||||| |||||| ||||||||||| |||||||    
T  23058972 catttcacacgtattaagaaaaa-tatataaatgaaagagagagaaaaatagttttaa 23058916  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 95 - 136
Target Start/End: Original strand, 31549556 - 31549597
Alignment:
Q  95 tttaactgaaccttttgctcatttcacacttattaagaaaaa 136  Q
    |||||||||  ||||||||||||| |||||||||||||||||    
T  31549556 tttaactgagtcttttgctcattttacacttattaagaaaaa 31549597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 138 - 243
Target Start/End: Complemental strand, 33584694 - 33584589
Alignment:
Q  138 tgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattgg 237  Q
    ||||||| |||| | ||||||||||||||||||| |||  || | || |||||||||||| | |  || ||||||| |||| | |||||| |||||||||    
T  33584694 tgtataaatgaaggagagagaaaaatggttttaagtgctattgttaagtattggtgtattctccagtatcataaatgcaaaatggaatatattgaattgg 33584595  T
Q  238 aagtga 243  Q
     |||||    
T  33584594 gagtga 33584589  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #42
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 111 - 168
Target Start/End: Original strand, 49100453 - 49100509
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttt 168  Q
    ||||||||||||| |||||||||||| ||||||| ||||||  |||||||||| ||||    
T  49100453 gctcatttcacacgtattaagaaaaa-tgtataaatgaaagacagagaaaaatagttt 49100509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 30463173 - 30463114
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||||| | |||||||||||| ||||||| |||| | ||||||||||| |||||||    
T  30463173 gctcatttcacgcgtattaagaaaaa-tgtataaatgaatgagagagaaaaatagttttaa 30463114  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #44
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 107 - 151
Target Start/End: Complemental strand, 32346679 - 32346635
Alignment:
Q  107 ttttgctcatttcacacttattaagaaaaagtgtataagtgaaag 151  Q
    ||||| ||||||||||| ||||||||||||||  |||||||||||    
T  32346679 ttttgttcatttcacacatattaagaaaaagtaaataagtgaaag 32346635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #45
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 83 - 235
Target Start/End: Original strand, 40023649 - 40023800
Alignment:
Q  83 cctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatc 182  Q
    ||||| ||||| ||||| ||| | ||||| | ||||||||  |||||||||||| | ||||| |||||  ||||||||||| ||||| | || | || ||    
T  40023649 cctccatcccactttaagtgagctttttgttaatttcacatgtattaagaaaaaatatataattgaaaaagagagaaaaattgttttgagtgtc-ttgtc 40023747  T
Q  183 aactattggtgtatttttctttagcataaatacaaagtagaatatgttgaatt 235  Q
    || |||| | | |||| || ||| ||||||| ||||||| ||||| |||||||    
T  40023748 aaatattagagcatttctccttaccataaatgcaaagtaaaatatattgaatt 40023800  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 78; Significance: 5e-36; HSPs: 43)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 78; E-Value: 5e-36
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 5147413 - 5147570
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| |||||||||||||||  ||||  ||||||||||||||||||||||||| | ||||||||||||  ||||||||||| |||| | || |     
T  5147413 tactccctccgtcccattttaactgagtctttgactcatttcacacttattaagaaaaaatatataagtgaaagaaagagaaaaatgattttgagtgtcc 5147512  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaatt 235  Q
    |||||||||||||||| ||| ||||||| ||||||| ||||||||||||| |||||||    
T  5147513 ttatcaactattggtgcattcttctttatcataaatgcaaagtagaatatattgaatt 5147570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 75; E-Value: 3e-34
Query Start/End: Original strand, 78 - 236
Target Start/End: Complemental strand, 38979095 - 38978937
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||||||||||||||| || ||| |||||||||||||||||||||||||||||| ||| ||||| || |||||||||||||| | ||||     
T  38979095 tactccctccgtcccattttaactgagccatttactcatttcacacttattaagaaaaagtgtacaagggaaagagatagaaaaatggttttgagtgccc 38978996  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    |||| ||||||||||  |||  |||||| ||||||| ||||||||||||| || |||||    
T  38978995 ttattaactattggtacattcctctttatcataaatgcaaagtagaatatattaaattg 38978937  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 72; E-Value: 2e-32
Query Start/End: Original strand, 95 - 242
Target Start/End: Original strand, 13016298 - 13016444
Alignment:
Q  95 tttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgt 194  Q
    ||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||  ||| | || | ||||||||||||||||     
T  13016298 tttaattgaacccttggctcatttcacacttattaagaaaaagtgtaaaagtgaaagagagagaaaaatgagtttgagtgtccttatcaactattggtgc 13016397  T
Q  195 atttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    | || |||||| ||||||| ||||||||||||| ||||||||| ||||    
T  13016398 a-ttctctttatcataaatgcaaagtagaatatattgaattgggagtg 13016444  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 71; E-Value: 8e-32
Query Start/End: Original strand, 78 - 236
Target Start/End: Original strand, 15564810 - 15564963
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||||||||| |||||||||| ||||  |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||  |||| | | ||     
T  15564810 tacttcctccatcccattttagctgagtctttcgctcatttcacacttattaagaaaaagtgtataagtgaaagagagagaaaaataattttgagtaccc 15564909  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    |||||||||||||||| ||     |||| ||||||| ||||||||||||| || |||||    
T  15564910 ttatcaactattggtgcat-----tttatcataaatgcaaagtagaatatattaaattg 15564963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 70; E-Value: 3e-31
Query Start/End: Original strand, 95 - 236
Target Start/End: Original strand, 13087676 - 13087816
Alignment:
Q  95 tttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgt 194  Q
    ||||| |||||| || ||||||||||||||||||||||||||||||| ||||||||| ||||||||||||  ||| | || | ||||||||||||||||     
T  13087676 tttaattgaacccttggctcatttcacacttattaagaaaaagtgtaaaagtgaaagagagagaaaaatgagtttgagtgtccttatcaactattggtgc 13087775  T
Q  195 atttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    | || |||||| ||||||| ||||||||||||| ||||||||    
T  13087776 a-ttctctttatcataaatgcaaagtagaatatattgaattg 13087816  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 76 - 242
Target Start/End: Original strand, 5357733 - 5357898
Alignment:
Q  76 agtacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgc 175  Q
    |||||| ||||| ||||| ||||| |||||| |||||||||| |||||||||||||||||| | ||| |||||| | ||||||||||||||||| | ||     
T  5357733 agtactccctccgtcccaatttaattgaaccatttgctcattacacacttattaagaaaaa-tatattagtgaaggagagagaaaaatggttttgagtgt 5357831  T
Q  176 ctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    |||| | || |||||||  ||| ||||||| |||||||  |||||||||||| ||| ||||||||||    
T  5357832 ctttgttaagtattggttcattcttctttatcataaatgtaaagtagaatatattgtattggaagtg 5357898  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 63; E-Value: 5e-27
Query Start/End: Original strand, 112 - 234
Target Start/End: Complemental strand, 42819060 - 42818938
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    ||||||||||||||||||||||||||||||||||| |||| || |||||||||||||| | |||| |||| ||  ||||||| ||| ||||||| |||||    
T  42819060 ctcatttcacacttattaagaaaaagtgtataagtaaaagagaaagaaaaatggttttgagtgcccttattaatcattggtgcattcttctttatcataa 42818961  T
Q  212 atacaaagtagaatatgttgaat 234  Q
    ||  |||||||||||| ||||||    
T  42818960 atgtaaagtagaatatattgaat 42818938  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 90 - 226
Target Start/End: Complemental strand, 4195112 - 4194975
Alignment:
Q  90 cccattttaactgaaccttttgctcatttcacacttattaagaaaaa-gtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactat 188  Q
    |||||||||||||| || ||  | ||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||| | |||| |||| ||||||    
T  4195112 cccattttaactgagcccttgacgcatttcacacttattaagaaaaaagtgtataagtaaaagagagagaaaaatggttttgagtgcccttatgaactat 4195013  T
Q  189 tggtgtatttttctttagcataaatacaaagtagaata 226  Q
    || || ||| ||||||| |||||||  |||||||||||    
T  4195012 tgatgcattcttctttatcataaatgaaaagtagaata 4194975  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 31090482 - 31090337
Alignment:
Q  91 ccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattg 190  Q
    |||||||||||||  | ||  ||||||| ||| ||||||||||||| |||||||||||||  |||||||||||| |||| | |||| |||||||||||||    
T  31090482 ccattttaactgagtccttgactcattttacatttattaagaaaaaatgtataagtgaaaaagagagaaaaatgattttgagtgcccttatcaactattg 31090383  T
Q  191 gtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    ||| ||| ||||||| ||||||  ||||||||||||| | ||||||    
T  31090382 gtgcattcttctttatcataaacgcaaagtagaatatatggaattg 31090337  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 78 - 241
Target Start/End: Original strand, 16926006 - 16926171
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgta---taagtgaaagggagagaaaaatggttttaaatg 174  Q
    |||| ||||| ||||||| ||| ||| ||||||||||||||||||| |||||| || |||||||   |||||||||| | ||||||||||||||| | ||    
T  16926006 tactccctccgtcccattataattgacccttttgctcatttcacacatattaa-aagaagtgtagtataagtgaaagagtgagaaaaatggttttgagtg 16926104  T
Q  175 cctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagt 241  Q
    ||||  | || |||||||| ||| ||||||| |||||||  |||||||||||| |||||||||||||    
T  16926105 ccttcgttaagtattggtgcattcttctttatcataaatggaaagtagaatatattgaattggaagt 16926171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 61; E-Value: 8e-26
Query Start/End: Original strand, 78 - 242
Target Start/End: Original strand, 39060340 - 39060503
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| | ||| ||||| |||||| ||||||||||||||||||||||||||||| | ||| |||||| | ||||||||||||||||| | ||| |    
T  39060340 tactccctccgttccaatttaattgaaccatttgctcatttcacacttattaagaaaaa-tatattagtgaaggagagagaaaaatggttttgagtgcat 39060438  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    || | || |||||||  ||| ||||||| ||||||| ||||||||| ||| ||| ||||||||||    
T  39060439 ttgttaagtattggtccattcttctttatcataaatgcaaagtagactatattgtattggaagtg 39060503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 89 - 242
Target Start/End: Original strand, 25111078 - 25111229
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactat 188  Q
    ||||||| ||| ||| | ||||||||||||||||| ||||||||||| | ||| |||||||||  |||||||||| ||||| | || |||| |||| |||    
T  25111078 tcccattataagtgagcattttgctcatttcacacatattaagaaaaggagtaaaagtgaaag--agagaaaaatagttttgagtgtctttgtcaagtat 25111175  T
Q  189 tggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    || || ||| ||||||| |||||||  |||||||||||| ||||||||||||||    
T  25111176 tgctgcattcttctttatcataaatgtaaagtagaatatattgaattggaagtg 25111229  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #13
Raw Score: 59; E-Value: 1e-24
Query Start/End: Original strand, 89 - 242
Target Start/End: Original strand, 25170169 - 25170320
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactat 188  Q
    ||||||| ||| ||| | ||||||||||||||||| ||||||||||| | ||| |||||||||  |||||||||| ||||| | || |||| |||| |||    
T  25170169 tcccattataagtgagcattttgctcatttcacacatattaagaaaaggagtaaaagtgaaag--agagaaaaatagttttgagtgtctttgtcaagtat 25170266  T
Q  189 tggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    || || ||| ||||||| |||||||  |||||||||||| ||||||||||||||    
T  25170267 tgctgcattcttctttatcataaatgtaaagtagaatatattgaattggaagtg 25170320  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #14
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 76 - 236
Target Start/End: Complemental strand, 31196512 - 31196352
Alignment:
Q  76 agtacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgc 175  Q
    |||||||||||| ||||||||||||||||   || |||||||||||||||||||||||||  ||||||| |||||| || |||||||| ||||| | ||     
T  31196512 agtacttcctccgtcccattttaactgaattcttggctcatttcacacttattaagaaaatatgtataaatgaaagagatagaaaaatagttttgagtgt 31196413  T
Q  176 ctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    | || |||  ||||| || |||||||||||  ||| || ||||||||||||| ||| ||||    
T  31196412 ccttgtcatttattgctgcatttttctttattatacatgcaaagtagaatatattggattg 31196352  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #15
Raw Score: 48; E-Value: 4e-18
Query Start/End: Original strand, 112 - 243
Target Start/End: Original strand, 11099429 - 11099559
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataa 211  Q
    |||||||||||| |||||||||||| ||||||| |||||| ||||||||||| ||||||| ||  ||| | || |||||||| ||| | |  || |||||    
T  11099429 ctcatttcacacatattaagaaaaa-tgtataaatgaaagagagagaaaaatagttttaagtgtttttgttaagtattggtgcattctccactatcataa 11099527  T
Q  212 atacaaagtagaatatgttgaattggaagtga 243  Q
    ||||||||| |||||| ||||||||| |||||    
T  11099528 atacaaagtggaatatattgaattgggagtga 11099559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #16
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 25108751 - 25108600
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactat 188  Q
    ||||||| ||| ||| | |||| |||||||||||| ||||||||||| | ||| |||||||||  |||||||||| ||||| | || |||| | || |||    
T  25108751 tcccattataagtgagcatttttctcatttcacacatattaagaaaaggagtaaaagtgaaag--agagaaaaatagttttgagtgtctttgttaagtat 25108654  T
Q  189 tggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    || || ||| ||||||| |||||||  |||||| ||||| ||||||||||||||    
T  25108653 tgctgcattcttctttatcataaatgtaaagtataatatattgaattggaagtg 25108600  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #17
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 89 - 242
Target Start/End: Complemental strand, 25167843 - 25167692
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactat 188  Q
    ||||||| ||| ||| | |||| |||||||||||| ||||||||||| | ||| |||||||||  |||||||||| ||||| | || |||| | || |||    
T  25167843 tcccattataagtgagcatttttctcatttcacacatattaagaaaaggagtaaaagtgaaag--agagaaaaatagttttgagtgtctttgttaagtat 25167746  T
Q  189 tggtgtatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
    || || ||| ||||||| |||||||  |||||| ||||| ||||||||||||||    
T  25167745 tgctgcattcttctttatcataaatgtaaagtataatatattgaattggaagtg 25167692  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #18
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 78 - 235
Target Start/End: Original strand, 39060868 - 39061028
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagt---gtataagtgaaagggagagaaaaatggttttaaatg 174  Q
    |||| ||||| ||||||||||| | |  ||||  ||||||||||||||||||||||||| |   ||||||||||||| ||||||||||||  ||| | ||    
T  39060868 tactccctccgtcccattttaatttagactttgactcatttcacacttattaagaaaaaatgtagtataagtgaaagagagagaaaaatgagtttgagtg 39060967  T
Q  175 cctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaatt 235  Q
     | || ||||| | | ||| ||| ||||||| ||||||| ||||||||||||| |||||||    
T  39060968 tccttgtcaaccactagtgcattcttctttatcataaatgcaaagtagaatatattgaatt 39061028  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #19
Raw Score: 46; E-Value: 7e-17
Query Start/End: Original strand, 139 - 236
Target Start/End: Complemental strand, 15898321 - 15898224
Alignment:
Q  139 gtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    ||||||||||||| ||||||||||||  ||||| || | |||| |||||||| || ||| ||||||| ||||||| ||||||||||||| ||||||||    
T  15898321 gtataagtgaaagagagagaaaaatgagtttaagtgtccttattaactattgatgcattcttctttatcataaatgcaaagtagaatatattgaattg 15898224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #20
Raw Score: 42; E-Value: 0.00000000000002
Query Start/End: Original strand, 177 - 238
Target Start/End: Complemental strand, 7871405 - 7871344
Alignment:
Q  177 tttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttgaattgga 238  Q
    ||||||||||||||||||||||||||||| |||||||  |||||||||||| || |||||||    
T  7871405 tttatcaactattggtgtatttttctttatcataaatgtaaagtagaatatattaaattgga 7871344  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #21
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 94 - 242
Target Start/End: Complemental strand, 35988808 - 35988661
Alignment:
Q  94 ttttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtg 193  Q
    |||||| ||||||||||  ||||||||||  |||||||||||| | |||||||||||  ||||||||||| ||||||| ||   || |||| ||||||||    
T  35988808 ttttaaatgaacctttttttcatttcacatatattaagaaaaaatttataagtgaaacagagagaaaaatagttttaagtg-tgttgtcaagtattggtg 35988710  T
Q  194 tatttttctttagcataaatacaaagtagaatatgttgaattggaagtg 242  Q
     |||  |  ||| ||||||| |||||| |||||| ||||||||| ||||    
T  35988709 cattcattcttatcataaatgcaaagttgaatatattgaattgggagtg 35988661  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #22
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 113 - 241
Target Start/End: Original strand, 42575591 - 42575718
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    ||||||||||| |||||||| ||| ||||||| |||| | ||||||||||||||||||| |||  ||   || |||||||||||| | |  || ||||||    
T  42575591 tcatttcacacatattaagacaaa-tgtataaatgaatgagagagaaaaatggttttaagtgctcttggtaagtattggtgtattctccactatcataaa 42575689  T
Q  213 tacaaagtagaatatgttgaattggaagt 241  Q
    | |||||| |||||| |||||||||||||    
T  42575690 tgcaaagtggaatatattgaattggaagt 42575718  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #23
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 115 - 237
Target Start/End: Original strand, 4044433 - 4044553
Alignment:
Q  115 atttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaata 214  Q
    |||||||||  |||||||||| |||||||| ||||| | | | ||||| | |||| ||||| |||||||| |||||||| ||| ||||||| |||||||     
T  4044433 atttcacacagattaagaaaa-gtgtataaatgaaaagaaaaaaaaaa-gattttgaatgcttttatcaagtattggtgcattcttctttatcataaatg 4044530  T
Q  215 caaagtagaatatgttgaattgg 237  Q
     |||||||||||| |||||||||    
T  4044531 taaagtagaatatattgaattgg 4044553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #24
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 236
Target Start/End: Original strand, 6172926 - 6173055
Alignment:
Q  106 cttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttcttta 205  Q
    ||||| ||||||||||||||||||||||||| ||||| ||||||   |||| |||||| ||||||| |||  ||||||| ||||  || ||||  | |||    
T  6172926 cttttcctcatttcacacttattaagaaaaa-tgtattagtgaagaagagataaaaatagttttaagtgctcttatcaaatattaatgcatttaccatta 6173024  T
Q  206 gcataaatacaaagtagaatatgttgaattg 236  Q
     ||||||| ||||||| ||||| ||||||||    
T  6173025 tcataaatgcaaagtataatatattgaattg 6173055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #25
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 106 - 235
Target Start/End: Original strand, 7311128 - 7311254
Alignment:
Q  106 cttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttcttta 205  Q
    ||||| || |||||| ||||||||||||||| ||||| | | ||||  |||||||||||||||||| |||  ||||||| |||| ||| ||||  | |||    
T  7311128 cttttactgatttcatacttattaagaaaaa-tgtattaataaaag--agagaaaaatggttttaagtgctcttatcaagtatttgtgcatttaccatta 7311224  T
Q  206 gcataaatacaaagtagaatatgttgaatt 235  Q
     ||||||| ||||||||||||| |||||||    
T  7311225 tcataaatgcaaagtagaatatattgaatt 7311254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #26
Raw Score: 39; E-Value: 0.000000000001
Query Start/End: Original strand, 114 - 242
Target Start/End: Original strand, 36006849 - 36006973
Alignment:
Q  114 catttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaat 213  Q
    ||||||||||  ||||||||||| ||||||| | |||| ||||   |||||||||||| || |||| |||| |||| ||| ||| ||||||| |||||||    
T  36006849 catttcacacagattaagaaaaa-tgtataaataaaagagaga---aaatggttttaagtgtctttgtcaagtatttgtgcattcttctttatcataaat 36006944  T
Q  214 acaaagtagaatatgttgaattggaagtg 242  Q
      ||||||||||||  |||||||||||||    
T  36006945 gtaaagtagaatatactgaattggaagtg 36006973  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #27
Raw Score: 38; E-Value: 0.000000000004
Query Start/End: Original strand, 83 - 156
Target Start/End: Original strand, 6629318 - 6629391
Alignment:
Q  83 cctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggaga 156  Q
    ||||| |||||||||| |||| ||||||  || |||||||| |||||||||||||||||||| |||||| ||||    
T  6629318 cctccgtcccattttatctgagcctttttttcttttcacacatattaagaaaaagtgtataaatgaaagagaga 6629391  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #28
Raw Score: 36; E-Value: 0.00000000006
Query Start/End: Original strand, 78 - 232
Target Start/End: Complemental strand, 35667073 - 35666922
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| |||| |||||| ||||| |||  ||||  ||||||||||| ||||||||||||| | ||| | ||||  |||||||||||| ||||||| ||| |    
T  35667073 tactccctctctcccaatttaagtgagtctttcactcatttcacatttattaagaaaaatt-tattattgaa--ggagagaaaaatagttttaagtgctt 35666977  T
Q  178 ttatcaactattggtgtatttttctttagcataaatacaaagtagaatatgttga 232  Q
    || | || |||||||| ||||  | |||  |||||||||||||||||||| ||||    
T  35666976 ttcttaagtattggtgcatttaccattattataaatacaaagtagaatatattga 35666922  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #29
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 78 - 136
Target Start/End: Complemental strand, 22983134 - 22983076
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaa 136  Q
    |||| ||||| ||||||||||||| ||| ||||| ||||||||||| ||||||||||||    
T  22983134 tactccctccgtcccattttaactaaacattttgttcatttcacacatattaagaaaaa 22983076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #30
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 78 - 151
Target Start/End: Complemental strand, 792168 - 792095
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaag 151  Q
    ||||||||| |||||||| ||| ||| | ||||||||||||||||  ||||||||| | |||||||||| ||||    
T  792168 tacttcctctctcccattataagtgagcattttgctcatttcacatatattaagaatatgtgtataagtaaaag 792095  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #31
Raw Score: 33; E-Value: 0.000000004
Query Start/End: Original strand, 108 - 192
Target Start/End: Original strand, 41594795 - 41594878
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggt 192  Q
    ||||||||||||| || |||||||||||| | |||||||||| | |||||||||||  |||||||||  ||| |||| |||||||    
T  41594795 tttgctcatttcatacatattaagaaaaa-tatataagtgaatgagagagaaaaataattttaaatgtttttgtcaagtattggt 41594878  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #32
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 858495 - 858433
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||||||||||||||| |||||||||||| ||||||| | || | |||| ||||||||||||||    
T  858495 tttgctcatttcacacatattaagaaaaa-tgtataaataaaggagagaaaaaaatggttttaa 858433  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #33
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 171
Target Start/End: Complemental strand, 3725342 - 3725284
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||||||||||| |||||||||||| |||||||  ||| | |||||||||||||||||||    
T  3725342 ctcatttcacacatattaagaaaaa-tgtataaaggaaggagagagaaaaatggttttaa 3725284  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #34
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 78 - 141
Target Start/End: Complemental strand, 15898668 - 15898605
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgta 141  Q
    |||| ||||| ||||||||||| |||  |||| | |||||||||||||||||||||||| ||||    
T  15898668 tactccctccgtcccattttaaatgagtctttagttcatttcacacttattaagaaaaaatgta 15898605  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #35
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 112 - 163
Target Start/End: Original strand, 25344692 - 25344742
Alignment:
Q  112 ctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaat 163  Q
    |||||||||||| || ||||||||| |||||||||||||| |||||||||||    
T  25344692 ctcatttcacacatactaagaaaaa-tgtataagtgaaagagagagaaaaat 25344742  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #36
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 124 - 163
Target Start/End: Original strand, 35012812 - 35012851
Alignment:
Q  124 ttattaagaaaaagtgtataagtgaaagggagagaaaaat 163  Q
    |||||||||||||||||||||||||||| || ||||||||    
T  35012812 ttattaagaaaaagtgtataagtgaaagagaaagaaaaat 35012851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #37
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 132 - 227
Target Start/End: Complemental strand, 35968857 - 35968762
Alignment:
Q  132 aaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagtagaatat 227  Q
    ||||||||||||| |||||| || |||||||| ||||| | || |||| |||| |||| ||  ||| |||||||  ||||||| ||||||||||||    
T  35968857 aaaaagtgtataaatgaaagagaaagaaaaatagttttgagtgtctttgtcaagtattagtacattcttctttattataaatataaagtagaatat 35968762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #38
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 171
Target Start/End: Complemental strand, 42211489 - 42211427
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    |||||||||||||||| |||||| ||||| ||||||| |||| | | |||||||||||||||||    
T  42211489 tttgctcatttcacacatattaa-aaaaaatgtataaatgaaggtgggagaaaaatggttttaa 42211427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #39
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 106 - 156
Target Start/End: Original strand, 39212500 - 39212550
Alignment:
Q  106 cttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggaga 156  Q
    |||||| ||||||||| | |||||||||||| |||||||||||||| ||||    
T  39212500 cttttgttcatttcacgcatattaagaaaaattgtataagtgaaagagaga 39212550  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #40
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 107 - 239
Target Start/End: Complemental strand, 4475405 - 4475276
Alignment:
Q  107 ttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttag 206  Q
    ||||| ||||| ||||| ||||||||||| |||||||||||||||  ||||||||||  | || | || | || |||| |||||||| |||   | |||     
T  4475405 ttttgttcattgcacacatattaagaaaa-gtgtataagtgaaagaaagagaaaaat--tgttgagtgtccttgtcaagtattggtgcattcaccattat 4475309  T
Q  207 cataaatacaaagtagaatatgttgaattggaa 239  Q
    ||||||| |||||| ||| ||||||||||||||    
T  4475308 cataaatgcaaagtggaaaatgttgaattggaa 4475276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #41
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 108 - 237
Target Start/End: Complemental strand, 33988360 - 33988232
Alignment:
Q  108 tttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagc 207  Q
    ||||||||  |||||| |||||||| ||| ||||||| |||| | || |||||||||||||||| ||  ||| | || |||||||||||| | |  || |    
T  33988360 tttgctcaaatcacacatattaagacaaa-tgtataaatgaaggagaaagaaaaatggttttaagtgtttttgttaagtattggtgtattctccactatc 33988262  T
Q  208 ataaatacaaagtagaatatgttgaattgg 237  Q
    ||||||  ||||| |||||| |||||||||    
T  33988261 ataaatgtaaagtggaatatattgaattgg 33988232  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #42
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 140 - 220
Target Start/End: Original strand, 39035834 - 39035914
Alignment:
Q  140 tataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaatacaaagt 220  Q
    |||||||||||| || |||||||| ||||| |||||| ||| || ||||| ||| |||  |||||| ||||| ||||||||    
T  39035834 tataagtgaaagagatagaaaaattgttttgaatgcccttaccagctattagtgcattcctctttatcataactacaaagt 39035914  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #43
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 111 - 171
Target Start/End: Complemental strand, 41184817 - 41184758
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||||||| |||||||||||| ||||||| |||| | || |||||||| |||||||    
T  41184817 gctcatttcacacgtattaagaaaaa-tgtataaatgaaggagaaagaaaaatagttttaa 41184758  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0576 (Bit Score: 62; Significance: 2e-26; HSPs: 1)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 62; E-Value: 2e-26
Query Start/End: Original strand, 91 - 236
Target Start/End: Complemental strand, 742 - 598
Alignment:
Q  91 ccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattg 190  Q
    ||||||||||||| |  || | |||||| ||| |||||||||||||||||||||||||||  ||||||||| ||||||| | || | |||||||||||||    
T  742 ccattttaactgagctcttggttcattttacaattattaagaaaaagtgtataagtgaaaaagagagaaaattggttttgagtgtc-ttatcaactattg 644  T
Q  191 gtgtatttttctttagcataaatacaaagtagaatatgttgaattg 236  Q
    ||| ||| ||||||| ||||||| |||||||||||||  |||||||    
T  643 gtgcattcttctttatcataaatccaaagtagaatataatgaattg 598  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0221 (Bit Score: 60; Significance: 3e-25; HSPs: 1)
Name: scaffold0221
Description:

Target: scaffold0221; HSP #1
Raw Score: 60; E-Value: 3e-25
Query Start/End: Original strand, 89 - 235
Target Start/End: Original strand, 10717 - 10864
Alignment:
Q  89 tcccattttaactgaaccttttgctcatttcacacttattaagaaaaag-tgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaacta 187  Q
    |||||||||||||||  | || |||||||||||| |||||||||||||  ||| |||||||||| ||||||||||||| ||| | || | ||||||||||    
T  10717 tcccattttaactgagtcattggctcatttcacagttattaagaaaaaaatgtgtaagtgaaagagagagaaaaatgggtttgagtgtccttatcaacta 10816  T
Q  188 ttggtgtatttttctttagcataaatacaaagtagaatatgttgaatt 235  Q
    |||||  ||| ||||||| ||||||| ||||||| ||||| |||||||    
T  10817 ttggttcattcttctttatcataaatgcaaagtaaaatatattgaatt 10864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0155 (Bit Score: 50; Significance: 3e-19; HSPs: 1)
Name: scaffold0155
Description:

Target: scaffold0155; HSP #1
Raw Score: 50; E-Value: 3e-19
Query Start/End: Original strand, 78 - 202
Target Start/End: Original strand, 7838 - 7960
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcct 177  Q
    |||| ||||| ||| ||||||| ||| || ||  ||||||||||| ||||||||||||| ||||||| |||||  |||||||||||  |||| | |||||    
T  7838 tactccctccgtcctattttaattgagcccttgactcatttcacatttattaagaaaaaatgtataaatgaaa--gagagaaaaattattttgagtgcct 7935  T
Q  178 ttatcaactattggtgtatttttct 202  Q
    |||||||||||||||| ||||||||    
T  7936 ttatcaactattggtgcatttttct 7960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0262 (Bit Score: 45; Significance: 3e-16; HSPs: 1)
Name: scaffold0262
Description:

Target: scaffold0262; HSP #1
Raw Score: 45; E-Value: 3e-16
Query Start/End: Original strand, 111 - 235
Target Start/End: Original strand, 12385 - 12509
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcata 210  Q
    ||||||||||||| ||||||||||||  |||||| |||||| ||| ||| ||||||||| | || |||| |||| |||| ||| ||| |||||||  |||    
T  12385 gctcatttcacacgtattaagaaaaaacgtataaatgaaagagagtgaataatggttttgagtgtctttgtcaagtattagtgcattcttctttattata 12484  T
Q  211 aatacaaagtagaatatgttgaatt 235  Q
    |||  |||||||||||| |||||||    
T  12485 aatgtaaagtagaatatattgaatt 12509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0034 (Bit Score: 40; Significance: 0.0000000000003; HSPs: 1)
Name: scaffold0034
Description:

Target: scaffold0034; HSP #1
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 96 - 171
Target Start/End: Complemental strand, 98997 - 98923
Alignment:
Q  96 ttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||||| |||| ||||||||||| |||||||||||| ||||||| |||| | |||||||||||| ||||||    
T  98997 ttaactgaaccatttgttcatttcacacatattaagaaaaa-tgtataaatgaatgagagagaaaaatgattttaa 98923  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 34; Significance: 0.000000001; HSPs: 1)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 113 - 237
Target Start/End: Original strand, 352415 - 352536
Alignment:
Q  113 tcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaa 212  Q
    |||||||||||  |||||||||| |||||||| | ||||  ||||||||||  |||| | || |||| | || |||||||| ||| ||||||| ||||||    
T  352415 tcatttcacacagattaagaaaa-gtgtataaataaaag--agagaaaaataattttgagtgtctttgttaagtattggtgcattcttctttatcataaa 352511  T
Q  213 tacaaagtagaatatgttgaattgg 237  Q
    |  |||||||||||| |||||||||    
T  352512 tgtaaagtagaatatattgaattgg 352536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0578 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0578
Description:

Target: scaffold0578; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 161
Target Start/End: Complemental strand, 4484 - 4438
Alignment:
Q  115 atttcacacttattaagaaaaagtgtataagtgaaagggagagaaaa 161  Q
    ||||||||| ||||||||||| |||||||||| |||| |||||||||    
T  4484 atttcacacatattaagaaaatgtgtataagtaaaagagagagaaaa 4438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0321 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0321
Description:

Target: scaffold0321; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 111 - 228
Target Start/End: Original strand, 9503 - 9618
Alignment:
Q  111 gctcatttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcata 210  Q
    ||||||||||||  ||||||||||||  |||||| |||| | ||||||||||||||||||| |||  || | || ||||  |||||| | | ||| ||||    
T  9503 gctcatttcaca--tattaagaaaaaaagtataaatgaaggagagagaaaaatggttttaagtgctcttgttaagtattaatgtattctccattatcata 9600  T
Q  211 aatacaaagtagaatatg 228  Q
    ||| |||||| |||||||    
T  9601 aatgcaaagtggaatatg 9618  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0086 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0086
Description:

Target: scaffold0086; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 115 - 236
Target Start/End: Complemental strand, 5969 - 5851
Alignment:
Q  115 atttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaata 214  Q
    |||||||||  |||||||||| |||||||| | ||||  ||||||||||| | || | || ||||||||| ||||| || |||  |||||| |||||||     
T  5969 atttcacacaaattaagaaaa-gtgtataaataaaag--agagaaaaatgatcttgagtgtctttatcaagtattgatgcattgctctttatcataaatg 5873  T
Q  215 caaagtagaatatgttgaattg 236  Q
     |||||||||||| ||||||||    
T  5872 taaagtagaatatattgaattg 5851  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0007 (Bit Score: 31; Significance: 0.00000006; HSPs: 1)
Name: scaffold0007
Description:

Target: scaffold0007; HSP #1
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 148 - 214
Target Start/End: Complemental strand, 158134 - 158068
Alignment:
Q  148 aaagggagagaaaaatggttttaaatgcctttatcaactattggtgtatttttctttagcataaata 214  Q
    |||| ||||||||||||||||| |||| | ||||||||||||| ||| || ||||||  ||||||||    
T  158134 aaagagagagaaaaatggttttgaatgtccttatcaactattgatgttttcttctttgtcataaata 158068  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0058 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0058
Description:

Target: scaffold0058; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 115 - 171
Target Start/End: Complemental strand, 14609 - 14554
Alignment:
Q  115 atttcacacttattaagaaaaagtgtataagtgaaagggagagaaaaatggttttaa 171  Q
    ||||||||| |||||||||||| ||||||| |||| |||||| |||||| |||||||    
T  14609 atttcacacgtattaagaaaaa-tgtataaatgaaggggagataaaaatagttttaa 14554  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0009 (Bit Score: 29; Significance: 0.0000009; HSPs: 1)
Name: scaffold0009
Description:

Target: scaffold0009; HSP #1
Raw Score: 29; E-Value: 0.0000009
Query Start/End: Original strand, 78 - 158
Target Start/End: Complemental strand, 220212 - 220132
Alignment:
Q  78 tacttcctccctcccattttaactgaaccttttgctcatttcacacttattaagaaaaagtgtataagtgaaagggagaga 158  Q
    |||| ||||| || ||||||||||||    || |||||||||||||||| ||||||| |||||||||| || || ||||||    
T  220212 tactccctccgtcgcattttaactgagttattggctcatttcacacttactaagaaagagtgtataagagagagagagaga 220132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University