View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11618_low_11 (Length: 323)
Name: NF11618_low_11
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11618_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 287; Significance: 1e-161; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 1 - 306
Target Start/End: Original strand, 34054692 - 34054995
Alignment:
| Q |
1 |
tcacagagagctcaatcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatc |
100 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34054692 |
tcacagagagctcaatcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatc |
34054791 |
T |
|
| Q |
101 |
tctcgactttcagtttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagttgcctcaaaataatttcatccagcct |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
34054792 |
tctcgactttcagtttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagttgcctc--gataatttcatccagcct |
34054889 |
T |
|
| Q |
201 |
attcaagaactctggcctaaagtattgcttcactcctcggtcgccaagcttttgatttggctataactgttgtccgacagcctcctttcacaatcacact |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
34054890 |
attcaagaactctggcctaaagtattgcttcactcctcggtcgccaagcttttgatttggttataactgttgtccgacagcctcctttcacaatcacact |
34054989 |
T |
|
| Q |
301 |
gcttcc |
306 |
Q |
| |
|
|||||| |
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| T |
34054990 |
gcttcc |
34054995 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 131; Significance: 6e-68; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 131; E-Value: 6e-68
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 47383293 - 47383029
Alignment:
| Q |
16 |
tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctc-tcgactttcagt |
114 |
Q |
| |
|
|||||||||||||| |||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| || ||||||||||| | | ||||||| |
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| T |
47383293 |
tcttagaggtctggcaccataactaggattataaccttcgtcgaccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagt |
47383194 |
T |
|
| Q |
115 |
ttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagttgcctcaa---aataatttcatccagcctattcaagaact |
211 |
Q |
| |
|
|||| |||| ||||||||||||||| | |||||| |||||| ||||||| |||||||||||| || ||| ||||||||||||||||||||||||| |
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| T |
47383193 |
ctctcgaacacctccttcagcattatatcagctatctccttaacctccagttttgtaagttgcctgaaaacaatcatttcatccagcctattcaagaact |
47383094 |
T |
|
| Q |
212 |
ctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgtcc |
275 |
Q |
| |
|
||||||||||||||||||||| |||||||||| |||||||||||||| || |||||||| ||||| |
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| T |
47383093 |
ctggcctaaagtattgcttcagctcctcggtcaccaagcttttgattcggttataactgctgtcc |
47383029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 47818366 - 47818094
Alignment:
| Q |
16 |
tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctctc-gactttcagt |
114 |
Q |
| |
|
|||||||||||||| ||||||| |||||| |||||||| ||||| ||||||| |||||||||||||||||| ||||||||||||||| | ||||||| |
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|
| T |
47818366 |
tcttagaggtctggcaccataattaggattataaccttcatcgaccactctctccctaaatctctctgtcactgaaagctcaatctctttggttttcagt |
47818267 |
T |
|
| Q |
115 |
ttctctgacacttccttcagca-ttatacaaactatctact-------taacatccagttatgtaagttgcctcaaaataat---ttcatccagcctatt |
203 |
Q |
| |
|
|||| |||| ||||| |||| ||||| | |||||| || || | ||||||| |||||||||||| |||| ||| ||||||||||||||| |
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| T |
47818266 |
ctctcgaacacctccttaagcaattatatcagctatctcctaactccttagcctccagttttgtaagttgcctgaaaacaatcatttcatccagcctatt |
47818167 |
T |
|
| Q |
204 |
caagaactctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgtcc |
275 |
Q |
| |
|
||||||||||||||||||||||||||||| ||||||| || |||||||||||||| || |||||||||||||| |
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|
| T |
47818166 |
caagaactctggcctaaagtattgcttcagctcctcgatcaccaagcttttgattcggttataactgttgtcc |
47818094 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 91; Significance: 4e-44; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 91; E-Value: 4e-44
Query Start/End: Original strand, 16 - 275
Target Start/End: Complemental strand, 40246007 - 40245743
Alignment:
| Q |
16 |
tcttagaggtctgggaccataactaggatcataacctttgtcgacaactctcttcctaaatctctctgtcaccgaaagctcaatctc-tcgactttcagt |
114 |
Q |
| |
|
||||||||| |||| ||||||||||||| |||||||| |||||| ||||||| |||||||||||||||||| || ||||||||||| | | ||||||| |
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|
| T |
40246007 |
tcttagaggcctggccccataactaggattataaccttcgtcgaccactctctccctaaatctctctgtcactgagagctcaatctctttggttttcagt |
40245908 |
T |
|
| Q |
115 |
ttctctgacacttccttcagcattatacaaactatctacttaacatccagttatgtaagttgcctcaa---aataatttcatccagcctattcaagaact |
211 |
Q |
| |
|
|||| |||| ||||||||||||||| |||||| |||||| ||||||| || |||||||| || ||| |||||||| |||||||||||||||| |
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|
| T |
40245907 |
ctctcgaacacctccttcagcattatatctgctatctccttaacctccagtttagtgagttgcctgaaaacaatcatttcatcaagcctattcaagaact |
40245808 |
T |
|
| Q |
212 |
ctggcctaaagtattgcttca-ctcctcggtcgccaagcttttgatttggctataactgttgtcc |
275 |
Q |
| |
|
|||||||||||||||| |||| ||| |||||| ||||||| |||||| | |||||||| ||||| |
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|
| T |
40245807 |
ctggcctaaagtattgtttcagctcttcggtcaccaagctcttgattctgttataactgctgtcc |
40245743 |
T |
|
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