View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11618_low_13 (Length: 318)
Name: NF11618_low_13
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11618_low_13 |
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Alignment Details
Target: chr4 (Bit Score: 153; Significance: 4e-81; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 153; E-Value: 4e-81
Query Start/End: Original strand, 124 - 300
Target Start/End: Original strand, 53723700 - 53723876
Alignment:
| Q |
124 |
ggattcaattccggcaatttttcaaatgatgaaatgaaaaatttgttctattatatcatataaaacatggaaattaatgaattggtgtgttactcggact |
223 |
Q |
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| T |
53723700 |
ggattcaattccggcaatttttcaaatgatgaaatgaaaattttgttctattatatcatataaaacatggaaattaatgaattggtgtgttactcggact |
53723799 |
T |
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| Q |
224 |
cccccctctccatcaatctcatctcttgtaatacctcgcagttccacatctatgttggtcttattcatgatataaag |
300 |
Q |
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| T |
53723800 |
ccccactctccatcaatctcatctcttgtaatattttgcagttccacatctatgttggtcttattcaggatataaag |
53723876 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 211 - 296
Target Start/End: Original strand, 23010722 - 23010807
Alignment:
| Q |
211 |
tgttactcggactcccccctctccatcaatctcatctcttgtaatacctcgcagttccacatctatgttggtcttattcatgatat |
296 |
Q |
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| T |
23010722 |
tgttattcggactccctcctctccatcaatcttatctctagtaatacctcgcagtttcacatctatgatgttcttattcaggatat |
23010807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 49; E-Value: 5e-19
Query Start/End: Original strand, 11 - 59
Target Start/End: Original strand, 53723587 - 53723635
Alignment:
| Q |
11 |
cagagacggtcgttaacattttcctatatttttatataaccatgttttc |
59 |
Q |
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| T |
53723587 |
cagagacggtcgttaacattttcctatatttttatataaccatgttttc |
53723635 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 74; Significance: 6e-34; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 187 - 300
Target Start/End: Complemental strand, 2727359 - 2727246
Alignment:
| Q |
187 |
aacatggaaattaatgaattggtgtgttactcggactcccccctctccatcaatctcatctcttgtaatacctcgcagttccacatctatgttggtctta |
286 |
Q |
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| T |
2727359 |
aacatgaaaattgatgaattggtgtgttactcggactcccttctctccatcaatctcatctccagtaatacctcgcagttccacatctatgatgttctta |
2727260 |
T |
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| Q |
287 |
ttcatgatataaag |
300 |
Q |
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| T |
2727259 |
tttaggatataaag |
2727246 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 66; Significance: 4e-29; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 66; E-Value: 4e-29
Query Start/End: Original strand, 187 - 300
Target Start/End: Original strand, 9793068 - 9793181
Alignment:
| Q |
187 |
aacatggaaattaatgaattggtgtgttactcggactcccccctctccatcaatctcatctcttgtaatacctcgcagttccacatctatgttggtctta |
286 |
Q |
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|||||||||||| ||||| ||||||||||||||||||||| ||||||| |||||||||||||| ||||||||||| |||||||| ||||||| ||||| |
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| T |
9793068 |
aacatggaaattgatgaactggtgtgttactcggactccctcctctccgtcaatctcatctctgtaaatacctcgcaattccacatatatgttgttctta |
9793167 |
T |
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| Q |
287 |
ttcatgatataaag |
300 |
Q |
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|||| |||||||| |
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| T |
9793168 |
ttcagaatataaag |
9793181 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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