View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF11618_low_15 (Length: 288)
Name: NF11618_low_15
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11618_low_15 |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 4)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 81 - 278
Target Start/End: Original strand, 37090706 - 37090903
Alignment:
| Q |
81 |
aaaatccaatattagacctatttctaacacttgtcatacttctcaaccttcctttccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttg |
180 |
Q |
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| T |
37090706 |
aaaatccaatattagatctatttctaacacttgtcatacttctcaatcttcctttccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttg |
37090805 |
T |
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| Q |
181 |
acaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcactgcacttcccctttttgtcaccttcttcttaatattcacctttg |
278 |
Q |
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| T |
37090806 |
acaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcactgcacttcccctttttgtcaccttcttcttaatattcacttttg |
37090903 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 81 - 273
Target Start/End: Original strand, 37097073 - 37097265
Alignment:
| Q |
81 |
aaaatccaatattagacctatttctaacacttgtcatacttctcaaccttcctttccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttg |
180 |
Q |
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| T |
37097073 |
aaaatccaatattagatctatttctaacacttgtcatacttctcaatcttcctttccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttg |
37097172 |
T |
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| Q |
181 |
acaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcactgcacttcccctttttgtcaccttcttcttaatattcac |
273 |
Q |
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| T |
37097173 |
acaacatctccatcctcttccattaacacgactgcaccttgaaccttccatcactgcacttcccctttttgtcaccttcttcttaatattcac |
37097265 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 37090650 - 37090691
Alignment:
| Q |
19 |
agaattagaagatgaagcactatcaacaacattgtttggttc |
60 |
Q |
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| T |
37090650 |
agaattagaagatgaagcactatcaacagcattgtttggttc |
37090691 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 19 - 60
Target Start/End: Original strand, 37097017 - 37097058
Alignment:
| Q |
19 |
agaattagaagatgaagcactatcaacaacattgtttggttc |
60 |
Q |
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| T |
37097017 |
agaattagaagatgaagcactatcaacagcattgtttggttc |
37097058 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 99; Significance: 7e-49; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 99; E-Value: 7e-49
Query Start/End: Original strand, 93 - 231
Target Start/End: Original strand, 23187296 - 23187434
Alignment:
| Q |
93 |
tagacctatttctaacacttgtcatacttctcaaccttcctttccctaaatgatgctcacaaagtgaataaccaacaagtgtttgttgacaacatctcca |
192 |
Q |
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||||||||||||| ||||||||||| |||||||| ||||||||||||||||||||||||||||| ||||||||||| || |||||||||||||| ||||| |
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| T |
23187296 |
tagacctatttcttacacttgtcatgcttctcaatcttcctttccctaaatgatgctcacaaagagaataaccaactagggtttgttgacaacacctcca |
23187395 |
T |
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| Q |
193 |
tcctcttccattaacacgactgcaccttgaaccttccat |
231 |
Q |
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| T |
23187396 |
tcctcttccattaactcgactgcaccgcgaaccttccat |
23187434 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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