View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11618_low_16 (Length: 273)

Name: NF11618_low_16
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11618_low_16
NF11618_low_16
[»] chr1 (3 HSPs)
chr1 (23-223)||(3290489-3290689)
chr1 (25-221)||(32984402-32984598)
chr1 (73-156)||(44888160-44888243)
[»] chr3 (3 HSPs)
chr3 (23-221)||(1581013-1581211)
chr3 (23-221)||(41404101-41404299)
chr3 (23-221)||(3663699-3663892)
[»] chr7 (3 HSPs)
chr7 (15-221)||(30464406-30464613)
chr7 (23-221)||(8160829-8161017)
chr7 (23-210)||(39827515-39827702)
[»] chr2 (4 HSPs)
chr2 (30-221)||(17139836-17140026)
chr2 (27-221)||(9259481-9259671)
chr2 (31-221)||(31392293-31392483)
chr2 (23-94)||(39809385-39809456)
[»] chr5 (2 HSPs)
chr5 (25-134)||(11609566-11609675)
chr5 (25-108)||(12893135-12893218)
[»] chr6 (2 HSPs)
chr6 (124-219)||(35091865-35091960)
chr6 (23-221)||(19228284-19228479)
[»] chr8 (1 HSPs)
chr8 (49-156)||(12735387-12735496)


Alignment Details
Target: chr1 (Bit Score: 197; Significance: 1e-107; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 23 - 223
Target Start/End: Complemental strand, 3290689 - 3290489
Alignment:
Q  23 tcacaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaagcaagcaatcgacgaaatt 122  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||    
T  3290689 tcacaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaagcaagcaattgacgaaatt 3290590  T
Q  123 cttgaatgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaaccttcgcaaaaca 222  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  3290589 cttgaatgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaaccttcgcaaaaca 3290490  T
Q  223 c 223  Q
    |    
T  3290489 c 3290489  T

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Target: chr1; HSP #2
Raw Score: 121; E-Value: 5e-62
Query Start/End: Original strand, 25 - 221
Target Start/End: Complemental strand, 32984598 - 32984402
Alignment:
Q  25 acaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaagcaagcaatcgacgaaattct 124  Q
    |||||||||||| ||| ||||||||||||| |||||||||||||||| ||||||| |||| | ||||||| |||||| |||||||||||| | || ||||    
T  32984598 acaacccatgttcgcaagagcgtctgcacatgaattcgcctcacgataagaatgataaatctccacttcccactccagagcaagcaatcggcaaatttct 32984499  T
Q  125 tgaatgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaaccttcgcaaaac 221  Q
    |||||||||| ||||||||||||||||||||||||  |||||||||||||| |||| |||||||| ||||||||||||||||||||||| |||||||    
T  32984498 tgaatgagacaccaaccaacaacacttccatccttagttgtctgcagggtatgcaccaccacacttgaatcaacgtgcaactcaacctttgcaaaac 32984402  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 73 - 156
Target Start/End: Complemental strand, 44888243 - 44888160
Alignment:
Q  73 agaatgacaaattttcacttccaactccaaagcaagcaatcgacgaaattcttgaatgagacgccaaccaacaacacttccatc 156  Q
    |||| ||||||| ||||||||   ||||||||||| |||| ||| || |||||| ||||||||  |||||||||| ||||||||    
T  44888243 agaaagacaaatcttcacttctcgctccaaagcaaacaatagacaaatttcttggatgagacggaaaccaacaacgcttccatc 44888160  T

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Target: chr3 (Bit Score: 135; Significance: 2e-70; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 135; E-Value: 2e-70
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 1581211 - 1581013
Alignment:
Q  23 tcacaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaagcaagcaatcgacgaaatt 122  Q
    |||||||||||||||||| ||||||||||  | |||||||||||||||| |||||||||||| ||||||||| ||||||||||||||||||| |||| ||    
T  1581211 tcacaacccatgtttgcaagagcgtctgcttacgaattcgcctcacgataagaatgacaaatcttcacttcccactccaaagcaagcaatcggcgaattt 1581112  T
Q  123 cttgaatgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaaccttcgcaaaac 221  Q
    |||||||||||||||||||||||||||||||||||||  ||||||| |||||| |||| |||||||| ||||||||||||||||||||||| |||||||    
T  1581111 cttgaatgagacgccaaccaacaacacttccatccttagttgtctgtagggtatgcaccaccacacttgaatcaacgtgcaactcaacctttgcaaaac 1581013  T

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Target: chr3; HSP #2
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 23 - 221
Target Start/End: Original strand, 41404101 - 41404299
Alignment:
Q  23 tcacaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaagcaagcaatcgacgaaatt 122  Q
    |||||||||||||||| | ||||||||||||| ||||||| |||||| | ||||||||| || ||||| ||| |||||| ||||||||| || |||| ||    
T  41404101 tcacaacccatgtttgaaagagcgtctgcacacgaattcgtctcacggtaagaatgacagatcttcacgtcccactccagagcaagcaaccggcgaattt 41404200  T
Q  123 cttgaatgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaaccttcgcaaaac 221  Q
    ||||||||||||||||||||||||||||||||||||   |||| ||||||||| |||| ||||||||| ||||||| ||||||||||||||||||||||    
T  41404201 cttgaatgagacgccaaccaacaacacttccatcctaagttgtttgcagggtatgcaccaccacactcaaatcaacatgcaactcaaccttcgcaaaac 41404299  T

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Target: chr3; HSP #3
Raw Score: 99; E-Value: 6e-49
Query Start/End: Original strand, 23 - 221
Target Start/End: Original strand, 3663699 - 3663892
Alignment:
Q  23 tcacaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaagcaagcaatcgacgaaatt 122  Q
    |||||| ||||||||||| |||||||||||||  |||| |||||||||  |||||||||||||||||||||| ||||||||||||||||||| |||| ||    
T  3663699 tcacaatccatgtttgcaagagcgtctgcacacaaatttgcctcacgaaaagaatgacaaattttcacttcccactccaaagcaagcaatcggcgaattt 3663798  T
Q  123 cttgaatgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaaccttcgcaaaac 221  Q
    |||||||||||||||||||||||||||||||||| ||  |||| |||||||| || || | |||     ||||||||||||| |||||| |||||||||    
T  3663799 cttgaatgagacgccaaccaacaacacttccatctttagttgtttgcagggtccgtaccatcac-----aatcaacgtgcaattcaaccctcgcaaaac 3663892  T

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Target: chr7 (Bit Score: 112; Significance: 1e-56; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 112; E-Value: 1e-56
Query Start/End: Original strand, 15 - 221
Target Start/End: Original strand, 30464406 - 30464613
Alignment:
Q  15 gacgcatg-tcacaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaagcaagcaatc 113  Q
    |||||||| |||||||||| ||||||| ||||||||||||| |||||||||||| ||| |||||||||||| ||||||||| |||||| ||||||||||     
T  30464406 gacgcatgctcacaacccaagtttgcaagagcgtctgcacacgaattcgcctcatgataagaatgacaaatcttcacttcccactccagagcaagcaata 30464505  T
Q  114 gacgaaattcttgaatgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaacctt 213  Q
      |||| ||||| ||||||||||||||||||||||||||||| |||  |||||||||||||| |||| |||||||| |||| ||||||||||||||| ||    
T  30464506 tgcgaatttcttcaatgagacgccaaccaacaacacttccattcttagttgtctgcagggtatgcaccaccacacttgaattaacgtgcaactcaacttt 30464605  T
Q  214 cgcaaaac 221  Q
     |||||||    
T  30464606 tgcaaaac 30464613  T

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Target: chr7; HSP #2
Raw Score: 88; E-Value: 2e-42
Query Start/End: Original strand, 23 - 221
Target Start/End: Original strand, 8160829 - 8161017
Alignment:
Q  23 tcacaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaagcaagcaatcgacgaaatt 122  Q
    |||||| ||||||||||| ||||||||||||| |||||||| ||||||| |||||||||||| ||||||||| ||||||||||||||||||  |||| ||    
T  8160829 tcacaatccatgtttgcaagagcgtctgcacacgaattcgcttcacgataagaatgacaaatcttcacttcccactccaaagcaagcaatcagcgaattt 8160928  T
Q  123 cttgaatgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaaccttcgcaaaac 221  Q
    ||||||||||          |||||||||| ||||||  |||||||||||||| |||| |||||||| |||||||| ||||||||||| || |||||||    
T  8160929 cttgaatgag----------acaacacttctatccttagttgtctgcagggtatgcaccaccacacttgaatcaacttgcaactcaacttttgcaaaac 8161017  T

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Target: chr7; HSP #3
Raw Score: 84; E-Value: 6e-40
Query Start/End: Original strand, 23 - 210
Target Start/End: Original strand, 39827515 - 39827702
Alignment:
Q  23 tcacaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaagcaagcaatcgacgaaatt 122  Q
    |||||||  ||||||||| ||||||| |||||  ||||||| ||||||| |||||||||||||||||| ||| |||| | ||||| || |||| ||| ||    
T  39827515 tcacaacaaatgtttgcaagagcgtccgcacacaaattcgcttcacgataagaatgacaaattttcacgtcccactctagagcaaacagtcgaggaattt 39827614  T
Q  123 cttgaatgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaac 210  Q
    |||||||||||||||||||| |||||| |||||||||  |||| |||| | || |||| |||||||||||||||||||| ||||||||    
T  39827615 cttgaatgagacgccaaccagcaacacctccatccttagttgtttgcaagctatgcaccaccacactcgaatcaacgtgaaactcaac 39827702  T

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Target: chr2 (Bit Score: 96; Significance: 4e-47; HSPs: 4)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 96; E-Value: 4e-47
Query Start/End: Original strand, 30 - 221
Target Start/End: Original strand, 17139836 - 17140026
Alignment:
Q  30 ccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaagcaagcaatcgacgaaattcttgaat 129  Q
    ||||||||||| ||| ||||||||| |||||| ||||||||| |||||||||||| ||||||||| ||| ||||| ||||||||| |||| || ||||||    
T  17139836 ccatgtttgcaagagtgtctgcacacgaattcacctcacgataagaatgacaaatcttcacttcccacttcaaagaaagcaatcggcgaatttattgaat 17139935  T
Q  130 gagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaaccttcgcaaaac 221  Q
     ||||||||||||| |||||||||||||||  |||||||||| || | ||| ||||||||||||||||| || ||||||||||||| |||||    
T  17139936 tagacgccaaccaa-aacacttccatccttagttgtctgcagagtccacaccaccacactcgaatcaacatgtaactcaaccttcgaaaaac 17140026  T

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Target: chr2; HSP #2
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 27 - 221
Target Start/End: Original strand, 9259481 - 9259671
Alignment:
Q  27 aacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaagcaagcaatcgacgaaattcttg 126  Q
    |||||||||||||| |||||||| ||||  |||||||| ||  || |||||||||||| |||||| || |||||||||||     ||| |||| ||||||    
T  9259481 aacccatgtttgcaagagcgtctacacacaaattcgccccataataagaatgacaaatcttcactccccactccaaagcac----tcggcgaatttcttg 9259576  T
Q  127 aatgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaaccttcgcaaaac 221  Q
    |||||||||||||||||||||||||||||||||  |||||| ||| || | ||| |||||||||||||||||||| |||||||||||||||||||    
T  9259577 aatgagacgccaaccaacaacacttccatccttagttgtctacagagtcctcaccaccacactcgaatcaacgtgtaactcaaccttcgcaaaac 9259671  T

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Target: chr2; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 31 - 221
Target Start/End: Complemental strand, 31392483 - 31392293
Alignment:
Q  31 catgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaa-gcaagcaatcgacgaaattcttgaat 129  Q
    |||||||||| |||||| ||||||| ||||||| |||| || | || || |||| ||||||||| |||||||| |||||||||||| ||| | |||||||    
T  31392483 catgtttgcaagagcgtatgcacaaaaattcgcatcacaataaaaaggaaaaatcttcacttcctactccaaaagcaagcaatcgatgaa-tccttgaat 31392385  T
Q  130 gagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaaccttcgcaaaac 221  Q
    ||||| ||||||||||| ||||||||||||  || |||||||||| ||||| || ||||| |||||| |||||||||||||||| |||||||    
T  31392384 gagacaccaaccaacaatacttccatccttagttatctgcagggtccgcaccactacacttgaatcagcgtgcaactcaacctttgcaaaac 31392293  T

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Target: chr2; HSP #4
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 23 - 94
Target Start/End: Complemental strand, 39809456 - 39809385
Alignment:
Q  23 tcacaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttcc 94  Q
    |||||||||||||||||| ||| ||||||||| |||||||| ||||||| |||||||||| |||||||||||    
T  39809456 tcacaacccatgtttgcaagagtgtctgcacacgaattcgcttcacgataagaatgacaatttttcacttcc 39809385  T

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Target: chr5 (Bit Score: 74; Significance: 5e-34; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 25 - 134
Target Start/End: Original strand, 11609566 - 11609675
Alignment:
Q  25 acaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaagcaagcaatcgacgaaattct 124  Q
    |||||||||||||||| ||||||||||||| |||||||||||||||| |||||||||||||||||||||  ||||||||||||||||||| | || ||||    
T  11609566 acaacccatgtttgcaagagcgtctgcacacgaattcgcctcacgataagaatgacaaattttcacttctcactccaaagcaagcaatcggcaaatttct 11609665  T
Q  125 tgaatgagac 134  Q
    | ||||||||    
T  11609666 taaatgagac 11609675  T

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Target: chr5; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 25 - 108
Target Start/End: Original strand, 12893135 - 12893218
Alignment:
Q  25 acaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaagcaag 108  Q
    ||||||||||||||||  || ||||| ||| ||||| |   |||||| |||||||||||| ||||||||  |||||||||||||    
T  12893135 acaacccatgtttgcaaaagtgtctgtacacgaatttggtacacgataagaatgacaaatcttcacttctcactccaaagcaag 12893218  T

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Target: chr6 (Bit Score: 64; Significance: 5e-28; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 64; E-Value: 5e-28
Query Start/End: Original strand, 124 - 219
Target Start/End: Original strand, 35091865 - 35091960
Alignment:
Q  124 ttgaatgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaaccttcgcaaa 219  Q
    |||| ||||||| |||||||||||||||||||||||  |||| |||||||||| ||| |||||||||||||| |||||||||||||||||||||||    
T  35091865 ttgattgagacgtcaaccaacaacacttccatccttagttgtgtgcagggtacacaccaccacactcgaatcgacgtgcaactcaaccttcgcaaa 35091960  T

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Target: chr6; HSP #2
Raw Score: 59; E-Value: 5e-25
Query Start/End: Original strand, 23 - 221
Target Start/End: Complemental strand, 19228479 - 19228284
Alignment:
Q  23 tcacaacccatgtttgcatgagcgtctgcacaagaattcgcctcacgattagaatgacaaattttcacttccaactccaaagcaagcaatcgacgaaatt 122  Q
    |||||||| ||||||| |  || |||| |||| ||||| |||| ||||| |||||||||| | ||||||||| ||||||| |||||||||||  ||| ||    
T  19228479 tcacaacctatgtttggaaaagtgtctacacacgaatttgccttacgataagaatgacaa-tcttcacttcccactccaa-gcaagcaatcggtgaattt 19228382  T
Q  123 cttgaatgagacgccaaccaacaacacttccatccttgattgtctgcagggtacgcacaaccacactcgaatcaacgtgcaactcaaccttcgcaaaac 221  Q
    ||||||||||||||||||||||| ||||| |||||||  ||||||  |  ||| |||| || |||||| |||| | ||||||||||||||||| |||||    
T  19228381 cttgaatgagacgccaaccaacatcactttcatccttagttgtctagaaagtatgcaccactacactcaaatc-atgtgcaactcaaccttcgaaaaac 19228284  T

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Target: chr8 (Bit Score: 35; Significance: 0.0000000001; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 49 - 156
Target Start/End: Original strand, 12735387 - 12735496
Alignment:
Q  49 tgcacaagaattcgcctcacgattagaatgaca--aattttcacttccaactccaaagcaagcaatcgacgaaattcttgaatgagacgccaaccaacaa 146  Q
    |||||| ||| |||||| ||||| ||||| |||  ||| || |||||| | | ||||||||| |||||||| | || |||||||||||| ||||||||||    
T  12735387 tgcacacgaactcgccttacgataagaataacacaaatcttaacttcccagtgcaaagcaagtaatcgacggattttttgaatgagacgtcaaccaacaa 12735486  T
Q  147 cacttccatc 156  Q
    ||||| ||||    
T  12735487 cactttcatc 12735496  T

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