View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF11618_low_19 (Length: 250)

Name: NF11618_low_19
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF11618_low_19
NF11618_low_19
[»] chr2 (9 HSPs)
chr2 (33-102)||(35925427-35925496)
chr2 (135-221)||(35925308-35925394)
chr2 (154-216)||(35890992-35891054)
chr2 (39-103)||(35919726-35919790)
chr2 (135-206)||(35919603-35919674)
chr2 (39-105)||(35556260-35556326)
chr2 (220-250)||(40125264-40125294)
chr2 (176-224)||(34688880-34688929)
chr2 (176-224)||(34711292-34711341)
[»] chr4 (1 HSPs)
chr4 (215-250)||(42823766-42823801)
[»] chr3 (2 HSPs)
chr3 (215-250)||(38232231-38232266)
chr3 (218-250)||(53121295-53121327)
[»] chr8 (1 HSPs)
chr8 (212-250)||(44997918-44997956)
[»] chr7 (1 HSPs)
chr7 (212-249)||(38486465-38486502)
[»] chr5 (1 HSPs)
chr5 (217-250)||(4736517-4736550)


Alignment Details
Target: chr2 (Bit Score: 62; Significance: 7e-27; HSPs: 9)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 62; E-Value: 7e-27
Query Start/End: Original strand, 33 - 102
Target Start/End: Complemental strand, 35925496 - 35925427
Alignment:
Q  33 acctgcttccttagcgacgtctgtcgtgaaagtggatgcaataatctgattaaccagaagataaagattg 102  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||    
T  35925496 acctgcttccttagcgacgtctgtcgtgaaagttgatgcaataatctgattaaccagaaggtaaagattg 35925427  T

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Target: chr2; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 135 - 221
Target Start/End: Complemental strand, 35925394 - 35925308
Alignment:
Q  135 ctttctaacactactaattgaaatttatgtaagttcttcctttttgaatataagtctcacatgactttcagtcaatagtaaaaaatt 221  Q
    |||| |||| ||||| ||||||||||||| || ||||||  ||||||||| |||||||||| || ||||||||||||||||| ||||    
T  35925394 ctttttaactctactcattgaaatttatgcaaattcttctattttgaatacaagtctcacaagaatttcagtcaatagtaaagaatt 35925308  T

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Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 154 - 216
Target Start/End: Complemental strand, 35891054 - 35890992
Alignment:
Q  154 gaaatttatgtaagttcttcctttttgaatataagtctcacatgactttcagtcaatagtaaa 216  Q
    |||||| || |||||||| || |||||||||||||||| |||||| |||||||||||||||||    
T  35891054 gaaattcatctaagttctaccattttgaatataagtctgacatgaatttcagtcaatagtaaa 35890992  T

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Target: chr2; HSP #4
Raw Score: 37; E-Value: 0.000000000006
Query Start/End: Original strand, 39 - 103
Target Start/End: Complemental strand, 35919790 - 35919726
Alignment:
Q  39 ttccttagcgacgtctgtcgtgaaagtggatgcaataatctgattaaccagaagataaagattgt 103  Q
    ||||||||| || ||||| |  ||| |||| ||||||||||||||||||||||||||||||||||    
T  35919790 ttccttagcaacatctgttgcaaaactggacgcaataatctgattaaccagaagataaagattgt 35919726  T

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Target: chr2; HSP #5
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 135 - 206
Target Start/End: Complemental strand, 35919674 - 35919603
Alignment:
Q  135 ctttctaacactactaattgaaatttatgtaagttcttcctttttgaatataagtctcacatgactttcagt 206  Q
    |||| |||||||||| |||| ||||||| |||||||| || ||  ||||||||||||||||||| |||||||    
T  35919674 ctttttaacactactgattgtaatttatataagttctgccattcggaatataagtctcacatgaatttcagt 35919603  T

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Target: chr2; HSP #6
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 39 - 105
Target Start/End: Original strand, 35556260 - 35556326
Alignment:
Q  39 ttccttagcgacgtctgtcgtgaaagtggatgcaataatctgattaaccagaagataaagattgtta 105  Q
    ||||||||| |||| ||||   ||| |||| |||| |||||||||||||||||||||||||||||||    
T  35556260 ttccttagcaacgtttgtcacaaaactggacgcaacaatctgattaaccagaagataaagattgtta 35556326  T

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Target: chr2; HSP #7
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 220 - 250
Target Start/End: Complemental strand, 40125294 - 40125264
Alignment:
Q  220 tttaaggctaaaatatgattttggtccctgc 250  Q
    |||||||||||||||||||||||||||||||    
T  40125294 tttaaggctaaaatatgattttggtccctgc 40125264  T

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Target: chr2; HSP #8
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 34688880 - 34688929
Alignment:
Q  176 ttttgaatataa-gtctcacatgactttcagtcaatagtaaaaaatttaa 224  Q
    |||||||||||| | ||||||||| ||||||||||||||||| |||||||    
T  34688880 ttttgaatataaagactcacatgaatttcagtcaatagtaaagaatttaa 34688929  T

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Target: chr2; HSP #9
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 176 - 224
Target Start/End: Original strand, 34711292 - 34711341
Alignment:
Q  176 ttttgaatataa-gtctcacatgactttcagtcaatagtaaaaaatttaa 224  Q
    |||||||||||| | ||||||||| ||||||||||||||||| |||||||    
T  34711292 ttttgaatataaagactcacatgaatttcagtcaatagtaaagaatttaa 34711341  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 42823766 - 42823801
Alignment:
Q  215 aaaaatttaaggctaaaatatgattttggtccctgc 250  Q
    |||||||| |||||||||||||||||||||||||||    
T  42823766 aaaaattttaggctaaaatatgattttggtccctgc 42823801  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 215 - 250
Target Start/End: Original strand, 38232231 - 38232266
Alignment:
Q  215 aaaaatttaaggctaaaatatgattttggtccctgc 250  Q
    ||||| ||||||||||||||||||||||||||||||    
T  38232231 aaaaaattaaggctaaaatatgattttggtccctgc 38232266  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 218 - 250
Target Start/End: Original strand, 53121295 - 53121327
Alignment:
Q  218 aatttaaggctaaaatatgattttggtccctgc 250  Q
    ||||||||||||||||||| |||||||||||||    
T  53121295 aatttaaggctaaaatatgtttttggtccctgc 53121327  T

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Target: chr8 (Bit Score: 31; Significance: 0.00000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 212 - 250
Target Start/End: Original strand, 44997918 - 44997956
Alignment:
Q  212 gtaaaaaatttaaggctaaaatatgattttggtccctgc 250  Q
    |||||||| | ||||||||||||||||||||||||||||    
T  44997918 gtaaaaaaataaaggctaaaatatgattttggtccctgc 44997956  T

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Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 212 - 249
Target Start/End: Original strand, 38486465 - 38486502
Alignment:
Q  212 gtaaaaaatttaaggctaaaatatgattttggtccctg 249  Q
    |||| |||||| ||||||||||||||||||||||||||    
T  38486465 gtaacaaattttaggctaaaatatgattttggtccctg 38486502  T

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Target: chr5 (Bit Score: 30; Significance: 0.00000008; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 217 - 250
Target Start/End: Complemental strand, 4736550 - 4736517
Alignment:
Q  217 aaatttaaggctaaaatatgattttggtccctgc 250  Q
    |||||||||||||||||||| |||||||||||||    
T  4736550 aaatttaaggctaaaatatggttttggtccctgc 4736517  T

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