View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF11618_low_2 (Length: 544)
Name: NF11618_low_2
Description: NF11618
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF11618_low_2 |
 | |
|
| [»] scaffold0425 (1 HSPs) |
| | |
|
Alignment Details
Target: chr3 (Bit Score: 454; Significance: 0; HSPs: 23)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 454; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 8455594 - 8455069
Alignment:
| Q |
1 |
gtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8455594 |
gtaccaaaacaaatatgtgaagaagtggcttgatgatcttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatgcta |
8455495 |
T |
|
| Q |
101 |
aataagctgaaagcagaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaaactaggctcaatgaacaac |
200 |
Q |
| |
|
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||| |||||||||||||||||| |
|
|
| T |
8455494 |
aataacctgaaagcagaatctgaaccacttaccaccaatttattgggcttggtttcagctttatctagaaatccatttgaatctaggctcaatgaacaac |
8455395 |
T |
|
| Q |
201 |
tggataaactagaacttcttgcaaagcaaaagaaagagttgggattgggagaaggtccttgtgctaggaataaaggcttagtcagttggaaaccttcaaa |
300 |
Q |
| |
|
|||||||||||||| ||||||||||| ||| |||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
|
|
| T |
8455394 |
tggataaactagaatttcttgcaaagaaaaggaaagagttgagattgggagaaggtccttgtgctaggaatgaaggcttagtcagttggaaaccttcaaa |
8455295 |
T |
|
| Q |
301 |
aaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaggaaaaattaatcaagtttttacttgcaggcaatgatagt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8455294 |
aaggttgtcatctacagctctcgtggatgagtcgagcatatatggtcgagatgttgataaggaaaaattaatcaagtttttacttgcaggcaatgatagt |
8455195 |
T |
|
| Q |
401 |
ggcaaccaggttccaataatcagcataatcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcatt |
500 |
Q |
| |
|
||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| | ||||||| |
|
|
| T |
8455194 |
ggcaaccaggttccaataatcagcatagtcggtttaggagggatgggtaaaaccacccttgctaagcttgtgtacaatgacaacaagataaaggagcatt |
8455095 |
T |
|
| Q |
501 |
ttgagcttaaagcatgggtctatgtt |
526 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
8455094 |
ttgaacttaaagcatgggtctatgtt |
8455069 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 450; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 8590669 - 8590144
Alignment:
| Q |
1 |
gtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatacta |
100 |
Q |
| |
|
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
|
|
| T |
8590669 |
gtaccgaagcaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatgcta |
8590570 |
T |
|
| Q |
101 |
aataagctgaaagcagaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaaactaggctcaatgaacaac |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
8590569 |
aataagctgaaagctaaatctgaaccacttagcagcaatttattgggcttggtttcagctttaactacaaatccatttgaaaccaggctcaatgaacaac |
8590470 |
T |
|
| Q |
201 |
tggataaactagaacttcttgcaaagcaaaagaaagagttgggattgggagaaggtccttgtgctaggaataaaggcttagtcagttggaaaccttcaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |||||||| || |||||||||||||||||||||||||||| |
|
|
| T |
8590469 |
tggataaactagaacttcttgcaaagcaaaagaaaaagttgggattgggagaaggtccctgtgctagtaacgaaggcttagtcagttggaaaccttcaaa |
8590370 |
T |
|
| Q |
301 |
aaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaggaaaaattaatcaagtttttacttgcaggcaatgatagt |
400 |
Q |
| |
|
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||| |
|
|
| T |
8590369 |
aaggttgtcatctacagctcttgtggatgagtcgagcatatatggtagagatgttgataagaaaaaactaatcaagtttttacttgcaggcaatgatagt |
8590270 |
T |
|
| Q |
401 |
ggcaaccaggttccaataatcagcataatcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcatt |
500 |
Q |
| |
|
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
8590269 |
ggcaaccgcgttccaataatcagcatagtcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcatt |
8590170 |
T |
|
| Q |
501 |
ttgagcttaaagcatgggtctatgtt |
526 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
8590169 |
ttgagcttaaagcatgggtctatgtt |
8590144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 418; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Complemental strand, 6736930 - 6736405
Alignment:
| Q |
1 |
gtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatacta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| ||||||||||||||||||||||| ||| |
|
|
| T |
6736930 |
gtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttctttatgaagcagaccaactattggatgagatttctactgatgcaatgcta |
6736831 |
T |
|
| Q |
101 |
aataagctgaaagcagaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaaactaggctcaatgaacaac |
200 |
Q |
| |
|
|||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| | |
|
|
| T |
6736830 |
aataaggtgaaagctgaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaatgtaggctcaatgaacagc |
6736731 |
T |
|
| Q |
201 |
tggataaactagaacttcttgcaaagcaaaagaaagagttgggattgggagaaggtccttgtgctaggaataaaggcttagtcagttggaaaccttcaaa |
300 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
6736730 |
tcgataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtcagttggaaaccttcaaa |
6736631 |
T |
|
| Q |
301 |
aaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaggaaaaattaatcaagtttttacttgcaggcaatgatagt |
400 |
Q |
| |
|
|||||||||||||||||||||| |||||||||| ||||||||||||||||||| ||||||||||||| ||||||||||||||||| |||||||||| ||| |
|
|
| T |
6736630 |
aaggttgtcatctacagctctcctggatgagtcaagcatatatggtagagatgatgataaggaaaaactaatcaagtttttacttacaggcaatgacagt |
6736531 |
T |
|
| Q |
401 |
ggcaaccaggttccaataatcagcataatcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcatt |
500 |
Q |
| |
|
|||||||||||||||||||| |||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
6736530 |
ggcaaccaggttccaataattagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagataaagaagcatt |
6736431 |
T |
|
| Q |
501 |
ttgagcttaaagcatgggtctatgtt |
526 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
6736430 |
ttgaacttaaagcatgggtctatgtt |
6736405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 414; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 6553527 - 6554052
Alignment:
| Q |
1 |
gtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatacta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6553527 |
gtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatttctactgatgcaatgata |
6553626 |
T |
|
| Q |
101 |
aataagctgaaagcagaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaaactaggctcaatgaacaac |
200 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6553627 |
aataagcaaaaagctgaatctgaaccacttaccaccaatttattgggtttcgtttcagctttaactacaaatccatttgaatgtaggctcaatgaacaac |
6553726 |
T |
|
| Q |
201 |
tggataaactagaacttcttgcaaagcaaaagaaagagttgggattgggagaaggtccttgtgctaggaataaaggcttagtcagttggaaaccttcaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
6553727 |
tggataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtcagttggaaaccttcaaa |
6553826 |
T |
|
| Q |
301 |
aaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaggaaaaattaatcaagtttttacttgcaggcaatgatagt |
400 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||| ||||||||| || |
|
|
| T |
6553827 |
aaggttgtcgtctacagctctcgtggatgagtcaagcatatatggtagggatgttgataaggaaaaattaatcaagtttttacttgaaggcaatgacggt |
6553926 |
T |
|
| Q |
401 |
ggcaaccaggttccaataatcagcataatcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcatt |
500 |
Q |
| |
|
||||||| ||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||| |
|
|
| T |
6553927 |
ggcaaccgggttccaataatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagataaagaagcatt |
6554026 |
T |
|
| Q |
501 |
ttgagcttaaagcatgggtctatgtt |
526 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
6554027 |
ttgaacttaaagcatgggtctatgtt |
6554052 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 15 - 522
Target Start/End: Complemental strand, 6948195 - 6947688
Alignment:
| Q |
15 |
atgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatactaaataagctgaaagc |
114 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6948195 |
atgtgaagaagtggcttgatgaacttaaacatgttgtctatgaggcagaccaactgttagatgagatttctactgatgcaatgctaaataagctgaaagc |
6948096 |
T |
|
| Q |
115 |
agaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaaactaggctcaatgaacaactggataaactagaa |
214 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||||||||| |
|
|
| T |
6948095 |
tgaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaatgtaggctcaatgaacagctcgataaactagaa |
6947996 |
T |
|
| Q |
215 |
cttcttgcaaagcaaaagaaagagttgggattgggagaaggtccttgtgctaggaataaaggcttagtcagttggaaaccttcaaaaaggttgtcatcta |
314 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||| ||||||| ||||| ||| ||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
6947995 |
cttcttgcaaagaaaaagaaagagttgggattgggagaaagtccttgcgctagtaatgaaggcttagtcagttggaaaccttcaaaaagattgtcatcta |
6947896 |
T |
|
| Q |
315 |
cagctctcgtggatgagtcgagcatatatggtagagatgttgataaggaaaaattaatcaagtttttacttgcaggcaatgatagtggcaaccaggttcc |
414 |
Q |
| |
|
|||||||| |||||||||| | ||||||||||||||||| ||||||||| || ||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6947895 |
cagctctcatggatgagtcaaccatatatggtagagatgatgataaggacaagttaatcaagtttttacttgcaggcaatgacagtggcaaccaggttcc |
6947796 |
T |
|
| Q |
415 |
aataatcagcataatcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcattttgagcttaaagca |
514 |
Q |
| |
|
||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||| |||||| || |
|
|
| T |
6947795 |
aataatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaatgacaacaagatagaggagcattttgaccttaaaaca |
6947696 |
T |
|
| Q |
515 |
tgggtcta |
522 |
Q |
| |
|
|||||||| |
|
|
| T |
6947695 |
tgggtcta |
6947688 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 378; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 6479071 - 6479596
Alignment:
| Q |
1 |
gtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatacta |
100 |
Q |
| |
|
|||||||| || |||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||| |
|
|
| T |
6479071 |
gtaccaaatcatatatgtgaagaagtggcttgataaacttaaacatgttgtttatgaagcagaccaactattagatgagatatctactgatgcaatgcta |
6479170 |
T |
|
| Q |
101 |
aataagctgaaagcagaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaaactaggctcaatgaacaac |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||||| |
|
|
| T |
6479171 |
aataagctgaaagctgaatctgaaccacttaccaccaatttattgggcgtggtttcagctttaactacaaatccatttgaatctaggctcaatgaacaac |
6479270 |
T |
|
| Q |
201 |
tggataaactagaacttcttgcaaagcaaaagaaagagttgggattgggagaaggtccttgtgctaggaataaaggcttagtcagttggaaaccttcaaa |
300 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||| | | ||||||||||| ||||||||| ||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
6479271 |
tggataaactagaatttcttgcaatgcaaaagtaggtgttgggattggcagaaggtcccagtgctagtaatgaaggcttagtcagttggaaaccttcaaa |
6479370 |
T |
|
| Q |
301 |
aaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaggaaaaattaatcaagtttttacttgcaggcaatgatagt |
400 |
Q |
| |
|
||| ||||||||||| ||||||||||||||||| ||||||||||| ||||||||||| |||||| || | ||||| |||||||||||||||||||| ||| |
|
|
| T |
6479371 |
aagattgtcatctacggctctcgtggatgagtccagcatatatggcagagatgttgacaaggaagaacttatcaaatttttacttgcaggcaatgacagt |
6479470 |
T |
|
| Q |
401 |
ggcaaccaggttccaataatcagcataatcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcatt |
500 |
Q |
| |
|
|| | ||||||||| |||||||||||| | |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| || |||| |
|
|
| T |
6479471 |
ggaacccaggttccgataatcagcatagttggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacaacaacaagatagaggaacatt |
6479570 |
T |
|
| Q |
501 |
ttgagcttaaagcatgggtctatgtt |
526 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
6479571 |
ttgaacttaaagcatgggtctatgtt |
6479596 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 286; E-Value: 1e-160
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 6519251 - 6519776
Alignment:
| Q |
1 |
gtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatacta |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6519251 |
gtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatgata |
6519350 |
T |
|
| Q |
101 |
aataagctgaaagcagaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaaactaggctcaatgaacaac |
200 |
Q |
| |
|
||||| ||||||| ||||||||||||||||||||||||||||| |||| |||||||||||||||| ||||||||||||| ||||||||||| ||| || |
|
|
| T |
6519351 |
tataagttgaaagctgaatctgaaccacttaccaccaatttatttggctgggtttcagctttaactggaaatccatttgaatctaggctcaataaactac |
6519450 |
T |
|
| Q |
201 |
tggataaactagaacttcttgcaaagcaaaagaaagagttgggattgggagaaggtccttgtgctaggaataaaggcttagtcagttggaaaccttcaaa |
300 |
Q |
| |
|
|||| | ||||||| ||||||| | |||| |||| | ||||||||| || |||||||||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
6519451 |
tggagacactagaatctcttgcacaacaaacgaaaaggctgggattggaagttggtccttgtgctagtaatgaaggcttagtcagttggaaaccttcaaa |
6519550 |
T |
|
| Q |
301 |
aaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaggaaaaattaatcaagtttttacttgcaggcaatgatagt |
400 |
Q |
| |
|
| | |||||||||||| |||| ||||||||||| ||| ||| ||||||||||||| ||||||||||| || | || |||||||||||| |||| ||| |
|
|
| T |
6519551 |
acgattgtcatctacatctcttgtggatgagtcaagcttatgtggtagagatgttcataaggaaaaactagtgaaacttttacttgcagacaataccagt |
6519650 |
T |
|
| Q |
401 |
ggcaaccaggttccaataatcagcataatcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcatt |
500 |
Q |
| |
|
|| |||||||||||||||||||||||| | ||||||||||| ||||| ||||||||||||||| | | ||| ||||| ||||||| || | | |||||| |
|
|
| T |
6519651 |
ggtaaccaggttccaataatcagcatagtgggtttaggaggaatgggtaaaaccacccttgctcaacatgtctacaatgacaacatgacaaagaagcatt |
6519750 |
T |
|
| Q |
501 |
ttgagcttaaagcatgggtctatgtt |
526 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
6519751 |
ttgaacttaaagcatgggtctatgtt |
6519776 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 312 - 526
Target Start/End: Complemental strand, 5250798 - 5250584
Alignment:
| Q |
312 |
ctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaggaaaaattaatcaagtttttacttgcaggcaatgatagtggcaaccaggt |
411 |
Q |
| |
|
|||||||| | |||||||| |||||||||||||||||||||| ||| ||||| | ||||| | |||||||| | | || | |||||||| || || |
|
|
| T |
5250798 |
ctacagctttggtggatgaatcgagcatatatggtagagatggtgacaaggaggagttaattgattttttactgtctgacataaacagtggcaatcatgt |
5250699 |
T |
|
| Q |
412 |
tccaataatcagcataatcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcattttgagcttaaa |
511 |
Q |
| |
|
||||||||||||||| | ||| | || || ||||| || ||||| |||||| |||||| |||||||||| ||| ||| | ||||||||||| |||||| |
|
|
| T |
5250698 |
accaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgcgtacaacgaccacaggatgcaggagcattttgaacttaaa |
5250599 |
T |
|
| Q |
512 |
gcatgggtctatgtt |
526 |
Q |
| |
|
|| |||||||||||| |
|
|
| T |
5250598 |
gcttgggtctatgtt |
5250584 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 54; E-Value: 9e-22
Query Start/End: Original strand, 13 - 126
Target Start/End: Complemental strand, 5281579 - 5281466
Alignment:
| Q |
13 |
atatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatactaaataagctgaaa |
112 |
Q |
| |
|
|||||| ||||||||||||||||| |||||||||| ||| ||||| ||||||||| | || ||||||||| ||||||| ||| ||| |||||||||||| |
|
|
| T |
5281579 |
atatgtaaagaagtggcttgatgatcttaaacatgctgtatatgaggcagaccaaattttcgatgagattgctactgacgcacaactgaataagctgaaa |
5281480 |
T |
|
| Q |
113 |
gcagaatctgaacc |
126 |
Q |
| |
|
| ||||||||||| |
|
|
| T |
5281479 |
gatgaatctgaacc |
5281466 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 51; E-Value: 6e-20
Query Start/End: Original strand, 19 - 85
Target Start/End: Original strand, 8479979 - 8480045
Alignment:
| Q |
19 |
gaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
85 |
Q |
| |
|
|||||| || ||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
|
|
| T |
8479979 |
gaagaattgacttgatgaacttaaacatgttgtttatgaagcaaaccaactattacatgagatttct |
8480045 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #11
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 259 - 526
Target Start/End: Complemental strand, 5299413 - 5299146
Alignment:
| Q |
259 |
ttgtgctaggaataaaggcttagtcagttggaaaccttcaaaaaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgat |
358 |
Q |
| |
|
||||||||| ||| |||| |||| |||||||| ||| |||||| ||| || |||| || | |||||||| |||||||||||||| ||||||| ||| |
|
|
| T |
5299413 |
ttgtgctagtaatgaaggtgaagtcggttggaaagctttaaaaagattgccaagtacatctttggtggatgaatcgagcatatatggcagagatggtgac |
5299314 |
T |
|
| Q |
359 |
aaggaaaaattaatcaagtttttacttgcaggcaatgatagtggcaaccaggttccaataatcagcataatcggtttaggagggatggggaaaaccaccc |
458 |
Q |
| |
|
|| || || ||| ||| ||||||||| | | || ||| |||| ||| || ||||||||||||||| | ||| |||| || ||||| |||||||||| |
|
|
| T |
5299313 |
aaagaggaagtaaccaaatttttactttccgacatagatgctggcgaccgtgtaccaataatcagcatagtgggtctaggtggaatgggaaaaaccaccc |
5299214 |
T |
|
| Q |
459 |
ttgctaagcttgtgtacaacgacaacaagatagaagagcattttgagcttaaagcatgggtctatgtt |
526 |
Q |
| |
|
||||| | ||||||||||| |||||| |||| | | || ||||| || ||||| |||||||||||| |
|
|
| T |
5299213 |
ttgctcaacttgtgtacaataacaacatgatacagaaacagtttgaactaaaagcctgggtctatgtt |
5299146 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #12
Raw Score: 43; E-Value: 0.000000000000003
Query Start/End: Original strand, 416 - 526
Target Start/End: Original strand, 6448286 - 6448396
Alignment:
| Q |
416 |
ataatcagcataatcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcattttgagcttaaagcat |
515 |
Q |
| |
|
|||||||||||| | ||| | || |||||||| || ||||| ||||||||||||||||||| |||||| |||| | ||||||||||| |||||| | | |
|
|
| T |
6448286 |
ataatcagcatagtgggtctgggtgggatgggtaagaccacttttgctaagcttgtgtacaatcacaacatgataaaggagcattttgaacttaaatctt |
6448385 |
T |
|
| Q |
516 |
gggtctatgtt |
526 |
Q |
| |
|
||||||||||| |
|
|
| T |
6448386 |
gggtctatgtt |
6448396 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #13
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 401 - 522
Target Start/End: Original strand, 4388426 - 4388547
Alignment:
| Q |
401 |
ggcaaccaggttccaataatcagcataatcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcatt |
500 |
Q |
| |
|
|||||||| || ||||||||||||||| | ||| | || || ||||| || ||||| |||||| ||||||||||||| ||| || ||| ||||||||| |
|
|
| T |
4388426 |
ggcaaccaagtaccaataatcagcatagtgggtctcggtggaatgggtaagaccactcttgctcagcttgtgtacaatgaccgcaggatgaaagagcatt |
4388525 |
T |
|
| Q |
501 |
ttgagcttaaagcatgggtcta |
522 |
Q |
| |
|
|||| |||||||| |||||||| |
|
|
| T |
4388526 |
ttgaacttaaagcttgggtcta |
4388547 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #14
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 17 - 82
Target Start/End: Complemental strand, 5299652 - 5299587
Alignment:
| Q |
17 |
gtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatt |
82 |
Q |
| |
|
|||||||||||||||| ||| |||||||||||||| ||||||||||| ||||| || ||||||||| |
|
|
| T |
5299652 |
gtgaagaagtggcttggtgatcttaaacatgttgtgtatgaagcagatcaacttttggatgagatt |
5299587 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #15
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 17 - 126
Target Start/End: Complemental strand, 5251090 - 5250981
Alignment:
| Q |
17 |
gtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatactaaataagctgaaagcag |
116 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||| | ||||| || |||||||||||| | ||||||||| ||| || ||||||||||| | |
|
|
| T |
5251090 |
gtgaagaagtggcttgatgatcttaaacattatgcatatgaggttgaccagctgttagatgagattgcaactgatgcaccactgaagaagctgaaagctg |
5250991 |
T |
|
| Q |
117 |
aatctgaacc |
126 |
Q |
| |
|
||||| |||| |
|
|
| T |
5250990 |
aatctcaacc |
5250981 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #16
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 526
Target Start/End: Complemental strand, 5268674 - 5268471
Alignment:
| Q |
323 |
gtggatgagtcgagcatatatggtagagatgttgataaggaaaaattaatcaagtttttacttgcaggcaatgatagtggcaaccaggttccaataatca |
422 |
Q |
| |
|
|||||||| || ||||||||||||||||||| ||| ||||| | |||||||| |||||||| | | || || | |||||||| || |||||||||| |
|
|
| T |
5268674 |
gtggatgaatccagcatatatggtagagatggtgacaaggaggagttaatcaattttttactgtctgacatagacaagggcaaccatgtaccaataatca |
5268575 |
T |
|
| Q |
423 |
gcataatcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcattttgagcttaaagcatgggtcta |
522 |
Q |
| |
|
||||| | ||| | || || ||||| || |||||||||||| | || |||||||| ||| | | ||| | ||| ||||| | | |||||| |||||||| |
|
|
| T |
5268574 |
gcatagtgggtctcggtggaatgggtaagaccacccttgctcaactcgtgtacaatgaccaaaggatcaaggagaattttaaacataaagcctgggtcta |
5268475 |
T |
|
| Q |
523 |
tgtt |
526 |
Q |
| |
|
|||| |
|
|
| T |
5268474 |
tgtt |
5268471 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #17
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 323 - 526
Target Start/End: Original strand, 8568359 - 8568562
Alignment:
| Q |
323 |
gtggatgagtcgagcatatatggtagagatgttgataaggaaaaattaatcaagtttttacttgcaggcaatgatagtggcaaccaggttccaataatca |
422 |
Q |
| |
|
|||||||| || |||||||||||||||||| |||||| | ||| ||||||| | ||| ||| || ||||||| |||||||||| || |||| | |
|
|
| T |
8568359 |
gtggatgaatcttgcatatatggtagagatgatgataaaaataaaataatcaattatttgcttttagacaatgatggtggcaaccatgtgagcgtaataa |
8568458 |
T |
|
| Q |
423 |
gcataatcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcattttgagcttaaagcatgggtcta |
522 |
Q |
| |
|
| || | ||| |||| |||||||| || |||||||||||| ||||| ||||| ||| |||||||||| |||| ||||| |||||||| |||||| | |
|
|
| T |
8568459 |
gtattgtgggtctaggtgggatgggtaagaccacccttgctcgacttgtctacaatgaccacaagatagagaagcaatttgaacttaaagcttgggtcca |
8568558 |
T |
|
| Q |
523 |
tgtt |
526 |
Q |
| |
|
|||| |
|
|
| T |
8568559 |
tgtt |
8568562 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #18
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 440 - 526
Target Start/End: Complemental strand, 5281185 - 5281099
Alignment:
| Q |
440 |
gggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcattttgagcttaaagcatgggtctatgtt |
526 |
Q |
| |
|
|||||||| || |||||||||||| |||||||||| |||||| | | || ||||||||||||| | |||||| |||||||||||| |
|
|
| T |
5281185 |
gggatgggtaagaccacccttgctgagcttgtgtataacgacgatagaattaaagagcattttgaacataaagcttgggtctatgtt |
5281099 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #19
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 467 - 526
Target Start/End: Complemental strand, 7750501 - 7750442
Alignment:
| Q |
467 |
cttgtgtacaacgacaacaagatagaagagcattttgagcttaaagcatgggtctatgtt |
526 |
Q |
| |
|
||||| ||||||||| |||||||| | ||||| ||||| |||||||| |||||||||||| |
|
|
| T |
7750501 |
cttgtttacaacgaccacaagatacatgagcaatttgaacttaaagcttgggtctatgtt |
7750442 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #20
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Original strand, 4388051 - 4388128
Alignment:
| Q |
17 |
gtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgca |
94 |
Q |
| |
|
|||||||||||||||||||| ||||||||| || ||||| | ||||| || |||||||||||| | ||||||||| |
|
|
| T |
4388051 |
gtgaagaagtggcttgatgatcttaaacataatgcatatgaggttgaccagctgttagatgagattgcaactgatgca |
4388128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #21
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 90
Target Start/End: Complemental strand, 6918008 - 6917935
Alignment:
| Q |
17 |
gtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactga |
90 |
Q |
| |
|
|||||||| ||||||||||| || ||||| | || ||||||| ||||||||| |||||| |||||||||||| |
|
|
| T |
6918008 |
gtgaagaattggcttgatgatctcaaacacgaggtatatgaagtagaccaacttctagatgtgatttctactga |
6917935 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #22
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 17 - 94
Target Start/End: Complemental strand, 7750987 - 7750910
Alignment:
| Q |
17 |
gtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgca |
94 |
Q |
| |
|
|||||||| ||||||||||| || ||||||| ||| || ||| ||| |||||||| |||| |||| ||||||||||| |
|
|
| T |
7750987 |
gtgaagaattggcttgatgatctcaaacatgatgtatacgaattagagcaactattcgatgtgattgctactgatgca |
7750910 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #23
Raw Score: 29; E-Value: 0.0000008
Query Start/End: Original strand, 136 - 164
Target Start/End: Original strand, 8480061 - 8480089
Alignment:
| Q |
136 |
caatttattgggcttggtttcagctttaa |
164 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
8480061 |
caatttattgggcttggtttcagctttaa |
8480089 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0425 (Bit Score: 422; Significance: 0; HSPs: 1)
Name: scaffold0425
Description:
Target: scaffold0425; HSP #1
Raw Score: 422; E-Value: 0
Query Start/End: Original strand, 1 - 526
Target Start/End: Original strand, 6566 - 7091
Alignment:
| Q |
1 |
gtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaactattagatgagatttctactgatgcaatacta |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| || |
|
|
| T |
6566 |
gtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaggcagaccaactattagatgagatttctactgatgcaatgata |
6665 |
T |
|
| Q |
101 |
aataagctgaaagcagaatctgaaccacttaccaccaatttattgggcttggtttcagctttaactacaaatccatttgaaactaggctcaatgaacaac |
200 |
Q |
| |
|
||||||| ||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| ||||||||||||||||| |
|
|
| T |
6666 |
aataagcaaaaagctgaatctgaaccacttaccaccaatttattgggtttggtttcagctttaactacaaatccatttgaatgtaggctcaatgaacaac |
6765 |
T |
|
| Q |
201 |
tggataaactagaacttcttgcaaagcaaaagaaagagttgggattgggagaaggtccttgtgctaggaataaaggcttagtcagttggaaaccttcaaa |
300 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||||| |
|
|
| T |
6766 |
tggataaactagaacttcttgcaaagcaaaagaaagatttgagattgggagaaggtcctagtgctagtaatgaaggcttagtcagttggaaaccttcaaa |
6865 |
T |
|
| Q |
301 |
aaggttgtcatctacagctctcgtggatgagtcgagcatatatggtagagatgttgataaggaaaaattaatcaagtttttacttgcaggcaatgatagt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||| |||||||||||||||||| ||||||||| ||| |
|
|
| T |
6866 |
aaggttgtcatctacagctctcgtggatgagtcaagcatatatggtagggatgttgataaggaaaaaataatcaagtttttacttgaaggcaatgacagt |
6965 |
T |
|
| Q |
401 |
ggcaaccaggttccaataatcagcataatcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaacgacaacaagatagaagagcatt |
500 |
Q |
| |
|
||||||||||||||||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||||| |
|
|
| T |
6966 |
ggcaaccaggttccaataatcagcatagtgggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaaagacaacaagataaagaagcatt |
7065 |
T |
|
| Q |
501 |
ttgagcttaaagcatgggtctatgtt |
526 |
Q |
| |
|
|||| ||||||||||||||||||||| |
|
|
| T |
7066 |
ttgaacttaaagcatgggtctatgtt |
7091 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 45; Significance: 2e-16; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 220 - 284
Target Start/End: Original strand, 41068553 - 41068617
Alignment:
| Q |
220 |
tgcaaagcaaaagaaagagttgggattgggagaaggtccttgtgctaggaataaaggcttagtca |
284 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||||||| |
|
|
| T |
41068553 |
tgcaaagcaaaagaaagagttgggattgggagaaggtcctaacgctagtaatgaaggcttagtca |
41068617 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 44; E-Value: 9e-16
Query Start/End: Original strand, 1 - 67
Target Start/End: Original strand, 41068418 - 41068482
Alignment:
| Q |
1 |
gtaccaaaacaaatatgtgaagaagtggcttgatgaacttaaacatgttgtttatgaagcagaccaa |
67 |
Q |
| |
|
|||||||| || |||||||||||| ||||||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
41068418 |
gtaccaaagcatatatgtgaagaattggcttgatgaacttaaacatgttgtt--tgaagcagaccaa |
41068482 |
T |
|
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Target: chr5 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 38 - 85
Target Start/End: Complemental strand, 19936232 - 19936185
Alignment:
| Q |
38 |
cttaaacatgttgtttatgaagcagaccaactattagatgagatttct |
85 |
Q |
| |
|
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|
|
| T |
19936232 |
cttaaacatgttgtttatgaagcaaaccaactattacatgagatttct |
19936185 |
T |
|
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Target: chr7 (Bit Score: 36; Significance: 0.00000000005; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 36; E-Value: 0.00000000005
Query Start/End: Original strand, 414 - 477
Target Start/End: Original strand, 6572800 - 6572863
Alignment:
| Q |
414 |
caataatcagcataatcggtttaggagggatggggaaaaccacccttgctaagcttgtgtacaa |
477 |
Q |
| |
|
|||||||||||||| | ||||| || ||||||||||| |||||||||||| ||||||| ||||| |
|
|
| T |
6572800 |
caataatcagcatagtgggtttgggtgggatggggaagaccacccttgctcagcttgtctacaa |
6572863 |
T |
|
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